MELO.jh020238.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh020238.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr09: 9528284 .. 9531366 (-)
RNA-Seq Expression	MELO.jh020238.1
Synteny	MELO.jh020238.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAATGTTCATTAACCAAACAGTCTAAAAGTAATGGTATGTAAGCATGTTTTCCATTTAGTGGATCAACGGTTGAAACCTATATATCTTGCCATTGCACCCTGAATAGCACTATGAGCGAGAAGAGTTCAGTAGATGTTATCTGATGCAATGCATGCAACTGCACGAATCATATAAGTAGGATCTGCAAATGAAACCAAAGTTGGACAGATTGAATTGATGAATTGATGTGAGGTTTCTTTTTTTCTTTATCATCTAAATTTCATTTTCAAGAAACCAAAATTGAAAAACATATATGAAAGCAATATTGTAATTTCTACCATAATTGTCAAGACTCTGGATTAGATTCTCCAAGATCTATATATTTTTTTTATTAGTCATGTAATTTATAAATATTTTGTATGCAAACATTTCATTTCTTTTAATTTTGTAATTGCAATTTATTAACGAAATTAGGATCTTGTAGCAACAATTATGGAGGAAATTATCCTGTATTTAACACCAATATTCATTCCTTATTTGGTCTATTTTTATGTATAAATGTACATTTATGTTGTAATAATCTTCAAGCAATATACAATAGAAATTCAATAAAAGTTACATGGTATCAGAGCCTAGCCTTTAACATAGCCGCCGACGCTGGCCATAGTTCTATCCACTCTTTTTCATATTCATCCCAAGTCTTTGTGCATTCCAATTCAATCCGCTTGCAGATCCATTCCATCTTCAATCCGTGCTTTAGTCTATCCAGCTTCCAAGTCCGCCCCCTCTGTCTGACTGTGAGAAAGTCCGCCGACCACGTGAAAATCTGACCGTGAGATCATTCAATCTGTGAGATTCTGCCGCTGTTTGCAAATCCGTCGTCGCTACTCTGCCTCTGTCAAACACAAAATCCGTTTGTAGATTTGTCGCTGCGTGAAGCTCCCAAGTTCGCCGTTTGCAATACCATTCTCGTCGTGCTTCAGATATGTGATTGCAGATCTATAAGGCTCAGTTCCCCGCCGCGTGAAGCTCCCAAGTCTGCCGTCTGCAGAACCATTCCGACCGTGCTCCAGATCTATGTTTGCTAATCTGTGAGATTCGGTTCCCGTGATTGTATTTGACTCACTAATTTTTGCTACTATTCTCAATAACTTTTTCAGTTGGAGAAAAATGACGTAGCTCGTCTCATTAGCACCATTCTTGATGGCACAAATTATATTACCTAGGCCCACCAAATGAGGAGTTTTCTTATAGGTCGAAAGTTATGGCGTATCGTTACGGGAGATATTACCAAGCCTGTCAAATCCACTCTTCCAGTGAAAAATACTGGTAAGAACAACACTGAGCATAATGATGCGAATACTTCTGATATCATTGTCCATGAAACTACTACGGAGGATATTAAGTACATTGAAAGACTTGAGGACTGGGATAGCAAAAATCACCAAATCATCACATGGTTAGGTAACACTTCTATTACAACCATCCATACTCAGTTTGATGCTTTTGATACTGCGAAAGAACTCTGGGATTTTTTGTACACACATTTTCAGTTTATAGGACTTGCTTATTATTATCAGTTGCATTCTACACTTGTTAGTCTAAATCAGGAAGTGGGACAATCTGTGAACGAATATCTAACTACTCTTCAACCCATTTGGACTAAGTTGGATCAGACAAAAATTAGCCCTGACCATATTCGTCTCATCAAAGTCTTAATGGGTCTCTAACCAGAATATGAATCCGTTCATGCTACTCTGTTACATCGCAACCCTCTACCATCTCTTGACACTGCTGTTCAGGAAATCTTATTTGAGGAGACAAGACTTGGTATTATCTCCTCTCTGCCCTTTGATGTCGCTCTTGCCACTGCTCATCTCCGACAGGCTAATGAGACTAGTTTTTGCAAAAATTACAAACTTCATGGCTATAAGTTTACTAACTGTCCTACCATTGAGTACAAGTATTGTTACAAACGAAGTCACATTTTGGATAATTGTCTAACTCATCCACCTCGCCCTCCTGGTCACTCACACAAACCCAAGTTTTCTCTTAAAGCTGGTTCTTCATCTGTTGTTGTTGTTGCTGCTACATCATTTGACATCACTGCACCTTCGAGCCTTCAGTTAACTAATCTTCATGATTTACTGAAATAGGTGATCTATTCCCAATCTACTACTCTTGTTGTCACCCCAGGTACCTCTTGGCTCATTGACTCGGCTTGTTGTTATCACATGACTTCTAACATTTCATTGTTATCCTCTCATATTCATGTTCAATCACTTCCCCTAATTCACTCTGCTGATGGTAATCACATGTCTATTTCTCACGTTGACATTGTTAATACACTCACCATAAAACTTTCTAACACCTACCATGTCCCAAATATCACATTCAATCTATCCTTTATTGGCTAATTATGTGATCTCAAACTTACTATTGTCTTTTCTTCTCATGGTTGTCAGGTTCAGGATTCTTAGATGGGACAAGTGATTGGTACGGGACGGAAGGTGGGTCGATTATTTGAGCTCACATCTCTCCAACACTCTCATGTGTTCCCAACCATCTCTGCTCCAGTCATTGATAACACTATATTTCAGTGGCATCTCTGTTTAGGTCATGCATGCTCTGATAAACTCCGTAGTTTAACTTCTATTGGCCTTTTAAATAATATTTCTAAGTTCAGTACTTTTGACTGTTTAAATTGCAAAAATGGCGAAACAACGTGCTTTGTCCTTTCCTAATTATGCTTCTTTATGTGATAAACCTTTTGGCCTAATTCACTATGATATTTGGAAACTTGCTCCATGTACTATTGTTTGATATTCCTAATTACCAAAGTTTGATATTTTTCTCTAATTAATTTTCTTTTTTCTAAAAAAAAAAACCATGTCTCGCATCGACATCTTCACATATTTTTACACTGAATATCTACCAGTAGTCTTACTTTATAGAGAGATGATGATTAAAAATAATCAAATATAGTATAATTAGGCCACATTCATAGTTTTATGAACTATTTATAACAATTTACTTAAAGTTTCATAAAGTTTCCAAAATTTTCATCAATATCAATACTATCATAAATCGAAAACTC

mRNA sequence

ATGGTTCAATGTTCATTAACCAAACAGTCTAAAAGTAATGATCCGTCGTCGCTACTCTGCCTCTGTCAAACACAAAATCCGTTTGTAGATTTGTCGCTGCGTGAAGCTCCCAAGTTCGCCGTTTGCAATACCATTCTCGTCGTGCTTCAGATATGTGATTGCAGATCTATAAGGCTCAGTTCCCCGCCGCGTGAAGCTCCCAAGTCTGCCGTCTGCAGAACCATTCCGACCGTGCTCCAGATCTATTTGGAGAAAAATGACGTAGCTCGTCTCATTAGCACCATTCTTGATGGCACAAATTATATTACCTAGGCCCACCAAATGAGGAGTTTTCTTATAGGTCGAAAGTTATGGCGTATCGTTACGGGAGATATTACCAAGCCTGTCAAATCCACTCTTCCAGTGAAAAATACTGGTAAGAACAACACTGAGCATAATGATGCGAATACTTCTGATATCATTGTCCATGAAACTACTACGGAGGATATTAAGTACATTGAAAGACTTGAGGACTGGGATAGCAAAAATCACCAAATCATCACATGGTTAGAACTCTGGGATTTTTTGTACACACATTTTCAGTTTATAGGACTTGCTTATTATTATCAGTTGCATTCTACACTTGTTAGTCTAAATCAGGAAGTGGGACAATCTGTGAACGAATATCTAACTACTCTTCAACCCATTTGGACTAAGTTGGATCAGACAAAAATTAGCCCTGACCATATTCGTCTCATCAAAGTCTTAATGGGTCTCTAACCAGAATATGAATCCGTTCATGCTACTCTGTTACATCGCAACCCTCTACCATCTCTTGACACTGCTGTTCAGGAAATCTTATTTGAGGAGACAAGACTTGGTATTATCTCCTCTCTGCCCTTTGATGTCGCTCTTGCCACTGCTCATCTCCGACAGGCTAATGAGACTAGTTTTTGCAAAAATTACAAACTTCATGGCTATAAGTTTACTAACTGTCCTACCATTGAGTACAAGTATTGTTACAAACGAAGTCACATTTTGGATAATTGTCTAACTCATCCACCTCGCCCTCCTGGTCACTCACACAAACCCAAGTTTTCTCTTAAAGCTGGTTCTTCATCTGTTGTTGTTGTTGCTGCTACATCATTTGACATCACTGCACCTTCGAGCCTTCAGTTAACTAATCTTCATGATTTACTGAAATAGGTTCAGGATTCTTAGATGGGACAAGTGATTGGTACGGGACGGAAGGTGGGTCGATTATTTGAGCTCACATCTCTCCAACACTCTCATGTGTTCCCAACCATCTCTGCTCCAGTCATTGATAACACTATATTTCAGTGGCATCTCTGTTTAGGTCATGCATGCTCTGATAAACTCCGTAGTTTAACTTCTATTGGCCTTTTAAATAATATTTCTAAGTTCAGTACTTTTGACTGTTTAAATTGCAAAAATGGCGAAACAACGTGCTTTGTCCTTTCCTAATTATGCTTCTTTATGTGATAAACCTTTTGGCCTAATTCACTATGATATTTGGAAACTTGCTCCATGTACTATTGTTTGATATTCCTAATTACCAAAGTTTGATATTTTTCTCTAATTAATTTTCTTTTTTCTAAAAAAAAAAACCATGTCTCGCATCGACATCTTCACATATTTTTACACTGAATATCTACCAGTAGTCTTACTTTATAGAGAGATGATGATTAAAAATAATCAAATATAGTATAATTAGGCCACATTCATAGTTTTATGAACTATTTATAACAATTTACTTAAAGTTTCATAAAGTTTCCAAAATTTTCATCAATATCAATACTATCATAAATCGAAAACTC

Coding sequence (CDS)

ATGAGGAGTTTTCTTATAGGTCGAAAGTTATGGCGTATCGTTACGGGAGATATTACCAAGCCTGTCAAATCCACTCTTCCAGTGAAAAATACTGGTAAGAACAACACTGAGCATAATGATGCGAATACTTCTGATATCATTGTCCATGAAACTACTACGGAGGATATTAAGTACATTGAAAGACTTGAGGACTGGGATAGCAAAAATCACCAAATCATCACATGGTTAGAACTCTGGGATTTTTTGTACACACATTTTCAGTTTATAGGACTTGCTTATTATTATCAGTTGCATTCTACACTTGTTAGTCTAAATCAGGAAGTGGGACAATCTGTGAACGAATATCTAACTACTCTTCAACCCATTTGGACTAAGTTGGATCAGACAAAAATTAGCCCTGACCATATTCGTCTCATCAAAGTCTTAATGGGTCTCTAA

Protein sequence

MRSFLIGRKLWRIVTGDITKPVKSTLPVKNTGKNNTEHNDANTSDIIVHETTTEDIKYIERLEDWDSKNHQIITWLELWDFLYTHFQFIGLAYYYQLHSTLVSLNQEVGQSVNEYLTTLQPIWTKLDQTKISPDHIRLIKVLMGL

Homology

[Close]

BLAST of MELO.jh020238.1 vs. NCBI nr
Match: XP_008450155.1 (PREDICTED: uncharacterized protein LOC103491828 [Cucumis melo])

HSP 1 Score: 251 bits (642), Expect = 1.83e-78
Identity = 126/145 (86.90%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MRSFLIGRKLWRIVTGDITKPVKSTLPVKNTGKNNTEHNDANTSDIIVHETTTEDIKYIE 60
           MRSFLIGRKLWRIVTGDITKP+K T PVKNT KNNTEHNDANTSD    ETT ED KYIE
Sbjct: 26  MRSFLIGRKLWRIVTGDITKPIKPTPPVKNTSKNNTEHNDANTSD----ETTAEDTKYIE 85

Query: 61  RLEDWDSKNHQIITWLELWDFLYTHFQFIGLAYYYQLHSTLVSLNQEVGQSVNEYLTTLQ 120
           RLEDWDSKNHQIITWLELWDFLY  FQ IGLA+YYQLHSTLV+LNQEVGQSVN+YL TLQ
Sbjct: 86  RLEDWDSKNHQIITWLELWDFLYPRFQSIGLAHYYQLHSTLVNLNQEVGQSVNKYLATLQ 145

Query: 121 PIWTKLDQTKISPDHIRLIKVLMGL 145
           PIWT+LDQ KISPDHIRLIKVLMGL
Sbjct: 146 PIWTQLDQAKISPDHIRLIKVLMGL 166

[Close]

BLAST of MELO.jh020238.1 vs. NCBI nr
Match: KAA0045094.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ96233.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 251 bits (642), Expect = 1.60e-75
Identity = 126/145 (86.90%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MRSFLIGRKLWRIVTGDITKPVKSTLPVKNTGKNNTEHNDANTSDIIVHETTTEDIKYIE 60
           MRSFLIGRKLWRIVTGDITKP+K T PVKNT KNNTEHNDANTSD    ETT ED KYIE
Sbjct: 26  MRSFLIGRKLWRIVTGDITKPIKPTPPVKNTSKNNTEHNDANTSD----ETTAEDTKYIE 85

Query: 61  RLEDWDSKNHQIITWLELWDFLYTHFQFIGLAYYYQLHSTLVSLNQEVGQSVNEYLTTLQ 120
           RLEDWDSKNHQIITWLELWDFLY  FQ IGLA+YYQLHSTLV+LNQEVGQSVN+YL TLQ
Sbjct: 86  RLEDWDSKNHQIITWLELWDFLYPRFQSIGLAHYYQLHSTLVNLNQEVGQSVNKYLATLQ 145

Query: 121 PIWTKLDQTKISPDHIRLIKVLMGL 145
           PIWT+LDQ KISPDHIRLIKVLMGL
Sbjct: 146 PIWTQLDQAKISPDHIRLIKVLMGL 166

[Close]

BLAST of MELO.jh020238.1 vs. NCBI nr
Match: KAA0047794.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 252 bits (644), Expect = 5.21e-75
Identity = 129/164 (78.66%), Postives = 135/164 (82.32%), Query Frame = 0


Query: 1   MRSFLIGRKLWRIVTGDITKPVKSTLPVKNTGKNNTEHNDANTSDIIVHETTTEDIKYIE 60
           MRSFLIGRKLWRIVTGDITKPVK T P+KNT KNNTEHNDANTSDIIVHE T EDI+YIE
Sbjct: 26  MRSFLIGRKLWRIVTGDITKPVKPTFPMKNTSKNNTEHNDANTSDIIVHEPTVEDIQYIE 85

Query: 61  RLEDWDSKNHQIITWL-------------------ELWDFLYTHFQFIGLAYYYQLHSTL 120
           RLEDWDSKNHQIITWL                   ELW+FLYT FQ IGLA+YYQLHSTL
Sbjct: 86  RLEDWDSKNHQIITWLGNTSIPAIHTQFDTFDSAKELWNFLYTRFQSIGLAHYYQLHSTL 145

Query: 121 VSLNQEVGQSVNEYLTTLQPIWTKLDQTKISPDHIRLIKVLMGL 145
           V+LNQEVGQSVNEYL T QPIWT+LDQ KISPDHIRLIKVLMGL
Sbjct: 146 VNLNQEVGQSVNEYLVTFQPIWTQLDQAKISPDHIRLIKVLMGL 189

[Close]

BLAST of MELO.jh020238.1 vs. NCBI nr
Match: XP_016901896.1 (PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo])

HSP 1 Score: 228 bits (580), Expect = 2.98e-68
Identity = 118/164 (71.95%), Postives = 129/164 (78.66%), Query Frame = 0


Query: 1   MRSFLIGRKLWRIVTGDITKPVKSTLPVKNTGKNNTEHNDANTSDIIVHETTTEDIKYIE 60
           MRSFLIGRKLWRIVTGDITKP+K T P+KN        N ANTSD+++HETT EDIKYIE
Sbjct: 26  MRSFLIGRKLWRIVTGDITKPIKPTTPMKNID------NTANTSDVLIHETTAEDIKYIE 85

Query: 61  RLEDWDSKNHQIITWL-------------------ELWDFLYTHFQFIGLAYYYQLHSTL 120
           RLEDWDSKNHQIITWL                   ELWDFL T FQ IGLA+YYQL+STL
Sbjct: 86  RLEDWDSKNHQIITWLGNTSIPAIHTQLDSFDTAKELWDFLATRFQSIGLAHYYQLYSTL 145

Query: 121 VSLNQEVGQSVNEYLTTLQPIWTKLDQTKISPDHIRLIKVLMGL 145
           ++LNQEVGQSVNEYL TLQPIWT+LDQTKI+PDHIRLIKVLMGL
Sbjct: 146 INLNQEVGQSVNEYLATLQPIWTQLDQTKINPDHIRLIKVLMGL 183

[Close]

BLAST of MELO.jh020238.1 vs. NCBI nr
Match: KAA0053979.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK20664.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 221 bits (562), Expect = 1.91e-66
Identity = 117/164 (71.34%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 1   MRSFLIGRKLWRIVTGDITKPVKSTLPVKNTGKNNTEHNDANTSDIIVHETTTEDIKYIE 60
           MRSFLIGRKLW IVTGDITKPVK   PV++TG+N+ EHND     I+ H+TT EDIKYIE
Sbjct: 25  MRSFLIGRKLWHIVTGDITKPVKPIPPVQSTGQNSIEHND-----IMDHDTTAEDIKYIE 84

Query: 61  RLEDWDSKNHQIITWL-------------------ELWDFLYTHFQFIGLAYYYQLHSTL 120
           RLEDWD KNHQIITWL                   ELWDFLYT FQ IGLA+YYQLHSTL
Sbjct: 85  RLEDWDRKNHQIITWLGNTSIPVIHTQFDAFDTAKELWDFLYTRFQSIGLAHYYQLHSTL 144

Query: 121 VSLNQEVGQSVNEYLTTLQPIWTKLDQTKISPDHIRLIKVLMGL 145
           VSLNQEVGQSVNEYL TLQPIWT+L+Q KIS DHI LIKVLMGL
Sbjct: 145 VSLNQEVGQSVNEYLATLQPIWTQLEQAKISLDHIHLIKVLMGL 183

[Close]

BLAST of MELO.jh020238.1 vs. ExPASy TrEMBL
Match: A0A1S3BPL0 (uncharacterized protein LOC103491828 OS=Cucumis melo OX=3656 GN=LOC103491828 PE=4 SV=1)

HSP 1 Score: 251 bits (642), Expect = 8.88e-79
Identity = 126/145 (86.90%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MRSFLIGRKLWRIVTGDITKPVKSTLPVKNTGKNNTEHNDANTSDIIVHETTTEDIKYIE 60
           MRSFLIGRKLWRIVTGDITKP+K T PVKNT KNNTEHNDANTSD    ETT ED KYIE
Sbjct: 26  MRSFLIGRKLWRIVTGDITKPIKPTPPVKNTSKNNTEHNDANTSD----ETTAEDTKYIE 85

Query: 61  RLEDWDSKNHQIITWLELWDFLYTHFQFIGLAYYYQLHSTLVSLNQEVGQSVNEYLTTLQ 120
           RLEDWDSKNHQIITWLELWDFLY  FQ IGLA+YYQLHSTLV+LNQEVGQSVN+YL TLQ
Sbjct: 86  RLEDWDSKNHQIITWLELWDFLYPRFQSIGLAHYYQLHSTLVNLNQEVGQSVNKYLATLQ 145

Query: 121 PIWTKLDQTKISPDHIRLIKVLMGL 145
           PIWT+LDQ KISPDHIRLIKVLMGL
Sbjct: 146 PIWTQLDQAKISPDHIRLIKVLMGL 166

[Close]

BLAST of MELO.jh020238.1 vs. ExPASy TrEMBL
Match: A0A5A7TPN5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00220 PE=4 SV=1)

HSP 1 Score: 251 bits (642), Expect = 7.74e-76
Identity = 126/145 (86.90%), Postives = 131/145 (90.34%), Query Frame = 0


Query: 1   MRSFLIGRKLWRIVTGDITKPVKSTLPVKNTGKNNTEHNDANTSDIIVHETTTEDIKYIE 60
           MRSFLIGRKLWRIVTGDITKP+K T PVKNT KNNTEHNDANTSD    ETT ED KYIE
Sbjct: 26  MRSFLIGRKLWRIVTGDITKPIKPTPPVKNTSKNNTEHNDANTSD----ETTAEDTKYIE 85

Query: 61  RLEDWDSKNHQIITWLELWDFLYTHFQFIGLAYYYQLHSTLVSLNQEVGQSVNEYLTTLQ 120
           RLEDWDSKNHQIITWLELWDFLY  FQ IGLA+YYQLHSTLV+LNQEVGQSVN+YL TLQ
Sbjct: 86  RLEDWDSKNHQIITWLELWDFLYPRFQSIGLAHYYQLHSTLVNLNQEVGQSVNKYLATLQ 145

Query: 121 PIWTKLDQTKISPDHIRLIKVLMGL 145
           PIWT+LDQ KISPDHIRLIKVLMGL
Sbjct: 146 PIWTQLDQAKISPDHIRLIKVLMGL 166

[Close]

BLAST of MELO.jh020238.1 vs. ExPASy TrEMBL
Match: A0A5A7TXR0 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00330 PE=4 SV=1)

HSP 1 Score: 252 bits (644), Expect = 2.52e-75
Identity = 129/164 (78.66%), Postives = 135/164 (82.32%), Query Frame = 0


Query: 1   MRSFLIGRKLWRIVTGDITKPVKSTLPVKNTGKNNTEHNDANTSDIIVHETTTEDIKYIE 60
           MRSFLIGRKLWRIVTGDITKPVK T P+KNT KNNTEHNDANTSDIIVHE T EDI+YIE
Sbjct: 26  MRSFLIGRKLWRIVTGDITKPVKPTFPMKNTSKNNTEHNDANTSDIIVHEPTVEDIQYIE 85

Query: 61  RLEDWDSKNHQIITWL-------------------ELWDFLYTHFQFIGLAYYYQLHSTL 120
           RLEDWDSKNHQIITWL                   ELW+FLYT FQ IGLA+YYQLHSTL
Sbjct: 86  RLEDWDSKNHQIITWLGNTSIPAIHTQFDTFDSAKELWNFLYTRFQSIGLAHYYQLHSTL 145

Query: 121 VSLNQEVGQSVNEYLTTLQPIWTKLDQTKISPDHIRLIKVLMGL 145
           V+LNQEVGQSVNEYL T QPIWT+LDQ KISPDHIRLIKVLMGL
Sbjct: 146 VNLNQEVGQSVNEYLVTFQPIWTQLDQAKISPDHIRLIKVLMGL 189

[Close]

BLAST of MELO.jh020238.1 vs. ExPASy TrEMBL
Match: A0A1S4E0Y9 (uncharacterized protein LOC107991463 OS=Cucumis melo OX=3656 GN=LOC107991463 PE=4 SV=1)

HSP 1 Score: 228 bits (580), Expect = 1.44e-68
Identity = 118/164 (71.95%), Postives = 129/164 (78.66%), Query Frame = 0


Query: 1   MRSFLIGRKLWRIVTGDITKPVKSTLPVKNTGKNNTEHNDANTSDIIVHETTTEDIKYIE 60
           MRSFLIGRKLWRIVTGDITKP+K T P+KN        N ANTSD+++HETT EDIKYIE
Sbjct: 26  MRSFLIGRKLWRIVTGDITKPIKPTTPMKNID------NTANTSDVLIHETTAEDIKYIE 85

Query: 61  RLEDWDSKNHQIITWL-------------------ELWDFLYTHFQFIGLAYYYQLHSTL 120
           RLEDWDSKNHQIITWL                   ELWDFL T FQ IGLA+YYQL+STL
Sbjct: 86  RLEDWDSKNHQIITWLGNTSIPAIHTQLDSFDTAKELWDFLATRFQSIGLAHYYQLYSTL 145

Query: 121 VSLNQEVGQSVNEYLTTLQPIWTKLDQTKISPDHIRLIKVLMGL 145
           ++LNQEVGQSVNEYL TLQPIWT+LDQTKI+PDHIRLIKVLMGL
Sbjct: 146 INLNQEVGQSVNEYLATLQPIWTQLDQTKINPDHIRLIKVLMGL 183

[Close]

BLAST of MELO.jh020238.1 vs. ExPASy TrEMBL
Match: A0A5A7UKE6 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00500 PE=4 SV=1)

HSP 1 Score: 221 bits (562), Expect = 9.24e-67
Identity = 117/164 (71.34%), Postives = 126/164 (76.83%), Query Frame = 0


Query: 1   MRSFLIGRKLWRIVTGDITKPVKSTLPVKNTGKNNTEHNDANTSDIIVHETTTEDIKYIE 60
           MRSFLIGRKLW IVTGDITKPVK   PV++TG+N+ EHND     I+ H+TT EDIKYIE
Sbjct: 25  MRSFLIGRKLWHIVTGDITKPVKPIPPVQSTGQNSIEHND-----IMDHDTTAEDIKYIE 84

Query: 61  RLEDWDSKNHQIITWL-------------------ELWDFLYTHFQFIGLAYYYQLHSTL 120
           RLEDWD KNHQIITWL                   ELWDFLYT FQ IGLA+YYQLHSTL
Sbjct: 85  RLEDWDRKNHQIITWLGNTSIPVIHTQFDAFDTAKELWDFLYTRFQSIGLAHYYQLHSTL 144

Query: 121 VSLNQEVGQSVNEYLTTLQPIWTKLDQTKISPDHIRLIKVLMGL 145
           VSLNQEVGQSVNEYL TLQPIWT+L+Q KIS DHI LIKVLMGL
Sbjct: 145 VSLNQEVGQSVNEYLATLQPIWTQLEQAKISLDHIHLIKVLMGL 183

The following BLAST results are available for this feature:

BLAST of MELO.jh020238.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450155.1	1.83e-78	86.90	PREDICTED: uncharacterized protein LOC103491828 [Cucumis melo]	[more]
KAA0045094.1	1.60e-75	86.90	putative mitochondrial protein [Cucumis melo var. makuwa] >TYJ96233.1 putative m...	[more]
KAA0047794.1	5.21e-75	78.66	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
XP_016901896.1	2.98e-68	71.95	PREDICTED: uncharacterized protein LOC107991463 [Cucumis melo]	[more]
KAA0053979.1	1.91e-66	71.34	Integrase, catalytic core [Cucumis melo var. makuwa] >TYK20664.1 Integrase, cata...	[more]

BLAST of MELO.jh020238.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh020238.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BPL0	8.88e-79	86.90	uncharacterized protein LOC103491828 OS=Cucumis melo OX=3656 GN=LOC103491828 PE=...	[more]
A0A5A7TPN5	7.74e-76	86.90	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7TXR0	2.52e-75	78.66	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S4E0Y9	1.44e-68	71.95	uncharacterized protein LOC107991463 OS=Cucumis melo OX=3656 GN=LOC107991463 PE=...	[more]
A0A5A7UKE6	9.24e-67	71.34	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of MELO.jh020238.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 76..145 e-value: 1.4E-5 score: 25.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh020238.1.t1	MELO.jh020238.1.t1	mRNA