MELO.jh019965.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh019965.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPentatricopeptide repeat-containing protein
Locationchr09: 4755442 .. 4757215 (-)
RNA-Seq ExpressionMELO.jh019965.1
SyntenyMELO.jh019965.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GATAAAAATGCCTGCAAAGAAGTGGAACCATACAAATGAAAGCTTCCATTTTATTCTAGTGGTGGTGTTGGTGGTGTACTTGATCATGATGACTCGTGGTGCGATAAAGCTCACTGAAAAGGGCCCCTCTTTCTCGACATGATTAATGCCATGGAGTTCGGGGAATCACAAAAAGCTAAGTCTTTTTTCTTTCTCTCTTTTTTACTTCTCTCTTTAATTTCTTAGACCACAAACTCATCGTGGTGCTGCAGGATTTTAACCTCACTGTTTTAATTGTACCACCCCTCACATGCATCAAGTGTTTGATATAATGCCACAGAAAGAAGAAAAAGTAAAGTAGAAAATTCGTTGGGTTTTTTTTTAATTTCATTAATTTGTCTGAATTATGAAATGAATGGGATGTTTTGTATGTTTGAGTGAATCAATTGCTGATTCGACACTTCATGGTGTATGAAAACAATTTTGTTCTGGGACTTTGTGGATTTCAGTTTTAGCATCTTCTGGGATTGAATCACCTGCAATGTAATTCATAACTAACTAGAGAACTTTAAGGAACTACAAAAGAAGATGAACGAGGAAGAACAGAATTTGGAGATGAAGATTAGGAAAGTGAGTAAAATGGGCAAAAGGGCAGGGATTTTATGGTCTATAATGCAATTCTTCATAATTTATATGTAAAAATTCCATGTTTTTGAAGAGTGGATGCTCTTCCATTTCAACTTTCACAAAACAAGCTGTGTATACAATCACGACAATAACAGATATAGACACAGAGGAAATGTATACTGTCAATATAAGAAGTGATCTTACTAGTCTTATTCATTCTGCAGTACAAATGTTCATCTTGGAAAAAAGGAAAGTGAAAGAAAAAAAAAAAAACAGAAGAGTGTGAACAAATAAACCAATTACCAATTACCAATCAATCCTTTTCTGCTTAGCTTGGCTAATATTGATGATGGAGGAAAATGAATAACAATATAATTAGAGGAGAGGCTAATAAGCCATTGCAACAGGAGGAACAGCAAAGCTGATGGTTCTCTGATTAGGCATAGCAAGCATTGCAGTGTGATCCAAGAAATCTTTAAGAGCAACAACAGATTCCAAAATAGTTCTCAAATCATCGGTACAAGAAAACCCAAAACACCCTTCTCTTCTAACTGCATAAACATAAAAAGTTATGCACCCTTTTCTGAATTTGAACCGAGCCATCTCACACCCACTTAGCCCTCTAATCATCTTCTTGTTCACTTCACCTAGAGGGATTTCTGTTGGCCAAACACGATCTATGGCTGCCTTCATGGTCTCATTTTCAAACACAAAGAGAAGAACTTTGGATTTCCTGGTGCCTAGGCCTAAAGTGAGGGTGTGCCAAGCATGGTGCGCAAGGATTGTGAAGTTTGTAGGAATGAAAGCTGTGGCTGATGGGAATGGCGGTTTGTGGCCGGAATTTCTGGTGGTAGCCGGAAAAGAAAGGAGCTGGAGGAGCTCTAAAGGCCTAGCTCGCCGGATTGTGAAGGATTTAACAATGAATTGGCCACCAAATCTAAGACCCTTTACATCAGAGCATGGCTTGAAAGAGAAATCAGAGGCTGATTTTGTAGTTTGGTCATTTGGGTGCTGGTGTTTTTGCTTCTTGTTGTGCTTCTTGCTCTTCTTTGTCTCTGTTTCTTCCATGTCTTGTTCTTCTTTGTGCACTTCTTTCTTCTCCTTTGTGGTGATGGGTTTTGTTGTTTCTGTTGATTCCATAATTAAAAACCCAATCTAATTCTACTTT

mRNA sequence

GATAAAAATGCCTGCAAAGAAGTGGAACCATACAAATGAAAGCTTCCATTTTATTCTAGTGGTGGTGTTGGTGGTGTACTTGATCATGATGACTCGTGGTGCGATAAAGCTCACTGAAAAGGGCCCCTCTTTCTCGACATGATTAATGCCATGGAGTTCGGGGAATCACAAAAAGCTAAGTCTTTTTTCTTTCTCTCTTTTTTACTTCTCTCTTTAATTTCTTAGACCACAAACTCATCGTGGTGCTGCAGGATTTTAACCTCACTGTTTTAATTGTACCACCCCTCACATGCATCAAGTGTTTGATATAATGCCACAGAAAGAAGAAAAAGTAAAGTAGAAAATTCGTTGGGTTTTTTTTTAATTTCATTAATTTGTCTGAATTATGAAATGAATGGGATGTTTTGTATGTTTGAGTGAATCAATTGCTGATTCGACACTTCATGGTGTATGAAAACAATTTTGTTCTGGGACTTTGTGGATTTCAGTTTTAGCATCTTCTGGGATTGAATCACCTGCAATGTAATTCATAACTAACTAGAGAACTTTAAGGAACTACAAAAGAAGATGAACGAGGAAGAACAGAATTTGGAGATGAAGATTAGGAAAGTGAGTAAAATGGGCAAAAGGGCAGGGATTTTATGGTCTATAATGCAATTCTTCATAATTTATATGTAAAAATTCCATGTTTTTGAAGAGTGGATGCTCTTCCATTTCAACTTTCACAAAACAAGCTGTGTATACAATCACGACAATAACAGATATAGACACAGAGGAAATGTATACTGTCAATATAAGAAGTGATCTTACTAGTCTTATTCATTCTGCAGTACAAATGTTCATCTTGGAAAAAAGGAAAGTGAAAGAAAAAAAAAAAAACAGAAGAGTGTGAACAAATAAACCAATTACCAATTACCAATCAATCCTTTTCTGCTTAGCTTGGCTAATATTGATGATGGAGGAAAATGAATAACAATATAATTAGAGGAGAGGCTAATAAGCCATTGCAACAGGAGGAACAGCAAAGCTGATGGTTCTCTGATTAGGCATAGCAAGCATTGCAGTGTGATCCAAGAAATCTTTAAGAGCAACAACAGATTCCAAAATAGTTCTCAAATCATCGGTACAAGAAAACCCAAAACACCCTTCTCTTCTAACTGCATAAACATAAAAAGTTATGCACCCTTTTCTGAATTTGAACCGAGCCATCTCACACCCACTTAGCCCTCTAATCATCTTCTTGTTCACTTCACCTAGAGGGATTTCTGTTGGCCAAACACGATCTATGGCTGCCTTCATGGTCTCATTTTCAAACACAAAGAGAAGAACTTTGGATTTCCTGGTGCCTAGGCCTAAAGTGAGGGTGTGCCAAGCATGGTGCGCAAGGATTGTGAAGTTTGTAGGAATGAAAGCTGTGGCTGATGGGAATGGCGGTTTGTGGCCGGAATTTCTGGTGGTAGCCGGAAAAGAAAGGAGCTGGAGGAGCTCTAAAGGCCTAGCTCGCCGGATTGTGAAGGATTTAACAATGAATTGGCCACCAAATCTAAGACCCTTTACATCAGAGCATGGCTTGAAAGAGAAATCAGAGGCTGATTTTGTAGTTTGGTCATTTGGGTGCTGGTGTTTTTGCTTCTTGTTGTGCTTCTTGCTCTTCTTTGTCTCTGTTTCTTCCATGTCTTGTTCTTCTTTGTGCACTTCTTTCTTCTCCTTTGTGGTGATGGGTTTTGTTGTTTCTGTTGATTCCATAATTAAAAACCCAATCTAATTCTACTTT

Coding sequence (CDS)

ATGCACCCTTTTCTGAATTTGAACCGAGCCATCTCACACCCACTTAGCCCTCTAATCATCTTCTTGTTCACTTCACCTAGAGGGATTTCTGTTGGCCAAACACGATCTATGGCTGCCTTCATGGTCTCATTTTCAAACACAAAGAGAAGAACTTTGGATTTCCTGGTGCCTAGGCCTAAAGTGAGGGTGTGCCAAGCATGGTGCGCAAGGATTGTGAAGTTTGTAGGAATGAAAGCTGTGGCTGATGGGAATGGCGGTTTGTGGCCGGAATTTCTGGTGGTAGCCGGAAAAGAAAGGAGCTGGAGGAGCTCTAAAGGCCTAGCTCGCCGGATTGTGAAGGATTTAACAATGAATTGGCCACCAAATCTAAGACCCTTTACATCAGAGCATGGCTTGAAAGAGAAATCAGAGGCTGATTTTGTAGTTTGGTCATTTGGGTGCTGGTGTTTTTGCTTCTTGTTGTGCTTCTTGCTCTTCTTTGTCTCTGTTTCTTCCATGTCTTGTTCTTCTTTGTGCACTTCTTTCTTCTCCTTTGTGGTGATGGGTTTTGTTGTTTCTGTTGATTCCATAATTAAAAACCCAATCTAA

Protein sequence

MHPFLNLNRAISHPLSPLIIFLFTSPRGISVGQTRSMAAFMVSFSNTKRRTLDFLVPRPKVRVCQAWCARIVKFVGMKAVADGNGGLWPEFLVVAGKERSWRSSKGLARRIVKDLTMNWPPNLRPFTSEHGLKEKSEADFVVWSFGCWCFCFLLCFLLFFVSVSSMSCSSLCTSFFSFVVMGFVVSVDSIIKNPI
Homology
BLAST of MELO.jh019965.1 vs. NCBI nr
Match: CAE6076342.1 (unnamed protein product [Arabidopsis arenosa])

HSP 1 Score: 124 bits (312), Expect = 4.70e-33
Identity = 65/98 (66.33%), Postives = 71/98 (72.45%), Query Frame = 0

Query: 40  FMVSFSNTKRRTLDFLVPRPKVRVCQAWCARIVKFVGMKAVADGNGGLWPEFLVVAGKER 99
           F+ S SNT   TLDFLVPRP V VC AWCARIVKFVG  A  + +GG   E     G+ER
Sbjct: 18  FIASVSNTNTTTLDFLVPRPSVSVCHAWCARIVKFVGRYAAVERSGGDDEE-----GRER 77

Query: 100 SWRSSKGLARRIVKDLTMNWPPNLRPFTSEHGLKEKSE 137
           S+RSS  LARRIV DLT+ WPPNLRPFTSE GLKE SE
Sbjct: 78  SFRSSSVLARRIVNDLTIIWPPNLRPFTSEVGLKEMSE 110

BLAST of MELO.jh019965.1 vs. NCBI nr
Match: KAF9668561.1 (hypothetical protein SADUNF_Sadunf14G0016300 [Salix dunnii])

HSP 1 Score: 88.2 bits (217), Expect = 2.31e-16
Identity = 52/99 (52.53%), Postives = 60/99 (60.61%), Query Frame = 0

Query: 28  GISVGQTRSMAAFMVSFSNTKRRTLDFLVPRPKVRVCQAWCARIVKFVGMKAVADGNGGL 87
           G  +   R    FM S   T + TLD LVP P V+VCQAW A+IV+FVG KAV  GN  L
Sbjct: 827 GSLIAILRLATKFMDSDLKTNKSTLDLLVPGPSVKVCQAWYAKIVRFVGRKAVVKGNRIL 886

Query: 88  WPEF-LVVAGKERSWRSSKGLARRIVKDLTMNWPPNLRP 125
              F L + G E ++RSS GLAR IVKD TMN P N  P
Sbjct: 887 LLFFFLSLGGYESTFRSSSGLARWIVKDFTMNCPQNEDP 925

BLAST of MELO.jh019965.1 vs. NCBI nr
Match: KAE8679465.1 (Pentatricopeptide repeat-containing protein [Hibiscus syriacus])

HSP 1 Score: 81.3 bits (199), Expect = 2.99e-14
Identity = 45/79 (56.96%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 71  IVKFVGMKAVADGNGGLWPEFLVVAGKERSWRSSKGLARRIVKDLTMNWPPNLRPFTSEH 130
           +VKFVG KAV  G G L  + L   G   S  SS GLAR +V DLTMNWPPNLRPFTS  
Sbjct: 1   MVKFVGKKAVVVGKGSLLLDLLNNGGDSSSLSSSSGLARLMVNDLTMNWPPNLRPFTSLL 60

Query: 131 GLKEKSEADFVVWSFGCWC 149
           GLKEKS+        GC C
Sbjct: 61  GLKEKSDDG------GCSC 73

BLAST of MELO.jh019965.1 vs. ExPASy TrEMBL
Match: A0A0A0KQX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517125 PE=4 SV=1)

HSP 1 Score: 218 bits (556), Expect = 2.50e-70
Identity = 112/119 (94.12%), Postives = 114/119 (95.80%), Query Frame = 0

Query: 77  MKAVADGNGGLWPEFLVVAGKERSWRSSKGLARRIVKDLTMNWPPNLRPFTSEHGLKEKS 136
           MKAVADGNGGLWPEFLVVAGKERS RSSKGLARRIVKDLTMNWPPNLRPFTSEHGLKEKS
Sbjct: 1   MKAVADGNGGLWPEFLVVAGKERSRRSSKGLARRIVKDLTMNWPPNLRPFTSEHGLKEKS 60

Query: 137 EADFVVWSFGCWCFCFLLCFLLFFVSVSSMSCSSLCTSFFSFVVMGFVVSVDSIIKNPI 195
             DFVVWSFGCWCFCFLL FLLFFVSVSS+SCSS+CTSFFSFVVMGFVVSVDSIIK PI
Sbjct: 61  --DFVVWSFGCWCFCFLLFFLLFFVSVSSISCSSMCTSFFSFVVMGFVVSVDSIIKRPI 117

BLAST of MELO.jh019965.1 vs. ExPASy TrEMBL
Match: A0A0A9MTX3 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 4.45e-26
Identity = 53/75 (70.67%), Postives = 58/75 (77.33%), Query Frame = 0

Query: 3  PFLNLNRAISHPLSPLIIFLFTSPRGISVGQTRSMAAFMVSFSNTKRRTLDFLVPRPKVR 62
          PFLNLNRAIS P+SP +  L TSP GI  GQ+ S AAFM+S SNTK  TLDFLVPRP V 
Sbjct: 5  PFLNLNRAISLPVSPRMSSLLTSPSGIMAGQSWSTAAFMLSDSNTKSTTLDFLVPRPSVS 64

Query: 63 VCQAWCARIVKFVGM 77
          VC AWCAR+VK VGM
Sbjct: 65 VCHAWCARMVKLVGM 79

BLAST of MELO.jh019965.1 vs. ExPASy TrEMBL
Match: A0A0A9VLF4 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 9.13e-21
Identity = 58/118 (49.15%), Postives = 64/118 (54.24%), Query Frame = 0

Query: 24  TSPRGISVGQTRSMAAFMVSFSNTKRRTLDFLVPRPKVRVCQAWCARIVKFVGMKAV--- 83
           TSP G + GQ  S AAFM + S TK   L+FLVPRP VRVC AWCAR+ K VGM AV   
Sbjct: 6   TSPSGTTCGQAASAAAFMAADSKTKTAALEFLVPRPSVRVCHAWCARMAKLVGMYAVVVG 65

Query: 84  ADGNGGLWPEFLVVAGK-ERSWRSSKGLARRIVKDLTMNWPPNLRPFTSEHGLKEKSE 137
           A+ +G   P   V AG   R   SS G ARR V        P  RP TS HG    S 
Sbjct: 66  ANDSGPPSPPAAVGAGAARRRCGSSSGAARRTVSARVTICAPKRRPLTSAHGANCASR 123

BLAST of MELO.jh019965.1 vs. ExPASy TrEMBL
Match: A0A6A2YAD6 (Pentatricopeptide repeat-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111402pilonHSYRG01509 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.45e-14
Identity = 45/79 (56.96%), Postives = 49/79 (62.03%), Query Frame = 0

Query: 71  IVKFVGMKAVADGNGGLWPEFLVVAGKERSWRSSKGLARRIVKDLTMNWPPNLRPFTSEH 130
           +VKFVG KAV  G G L  + L   G   S  SS GLAR +V DLTMNWPPNLRPFTS  
Sbjct: 1   MVKFVGKKAVVVGKGSLLLDLLNNGGDSSSLSSSSGLARLMVNDLTMNWPPNLRPFTSLL 60

Query: 131 GLKEKSEADFVVWSFGCWC 149
           GLKEKS+        GC C
Sbjct: 61  GLKEKSDDG------GCSC 73

BLAST of MELO.jh019965.1 vs. ExPASy TrEMBL
Match: A0A0A9VGE2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.05e-14
Identity = 34/54 (62.96%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 24 TSPRGISVGQTRSMAAFMVSFSNTKRRTLDFLVPRPKVRVCQAWCARIVKFVGM 77
          TSP G + GQ  S AAFM + S TK   L+FLVPRP VRVC AWCAR+ K VGM
Sbjct: 6  TSPSGTTCGQAASAAAFMAADSKTKTAALEFLVPRPSVRVCHAWCARMAKLVGM 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAE6076342.14.70e-3366.33unnamed protein product [Arabidopsis arenosa][more]
KAF9668561.12.31e-1652.53hypothetical protein SADUNF_Sadunf14G0016300 [Salix dunnii][more]
KAE8679465.12.99e-1456.96Pentatricopeptide repeat-containing protein [Hibiscus syriacus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQX92.50e-7094.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517125 PE=4 SV=1[more]
A0A0A9MTX34.45e-2670.67Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9VLF49.13e-2149.15Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A6A2YAD61.45e-1456.96Pentatricopeptide repeat-containing protein OS=Hibiscus syriacus OX=106335 GN=F3... [more]
A0A0A9VGE27.05e-1462.96Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh019965.1.t1MELO.jh019965.1.t1mRNA