MELO.jh019213.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh019213.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr08: 30700769 .. 30701814 (+)
RNA-Seq ExpressionMELO.jh019213.1
SyntenyMELO.jh019213.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTATGTAAGAATTTTTCTTATTCATAACCCACCTTTCTTCTTCCTGAAGATTCAATTCTCCGTAAAGTTTCTCCGCAATTCTCGCAGGTTCCGATTTACATCTCGTCAGAATCAGGTTCCGATTGCCATTTACAGACTTACAATCTCCATCTCCCTTTGAACTTTCCAGTTTCTTCAATAATCGTTCCGAGTTTCGTGACTCTATTTTGGAAGCCGTGTTGTTTCCAAAACCGCGCTCTGTTTTCTCTTCTTCTTCGACAGTACTTCCGTCGCTTGTAATCGACGAACTCCTGTACCGATTACCGTTAAACGACGAACGATTTGGCGTAGATCTACATCTCGTCAGAATGAGAGCGTTTTTCGGCGGCGATGGCACCGAAGACGACGCATAAACCGCATCTCTATCTCTTCCGTCGTCGTCCTCTTCATCTTTCTCCGAATCTTCCGCTTCGTTTCCGACGCGAGATTCAGAGATCCGTCTAATTTCACGTTTTCCACGGAAGAGCATCGCCGACCTGTTCCAGAACGTTCGACAGTGGCGTCGATTGAAAGAGAGGACGCTTCTAATCCACCGGCAACGAACGGCGGGAGTTTTATTAGAAGAGCGTTTATTGGTGCGAACTTGTCCCATACAAGTAACCTTCGGAGAGGACGGTTCTTCAGTTTCAATGGCGACGTTCTTCTTCCTGACGAAGATCGGACTGGAGCGAGACCGGCTGCTTTTACTACGATTTCCGGCATCGGCTCTAAGGAAGCTCATCAATGGCGGCGGAAACAGGTCGGTTCGACTGGGACTGGAAATCGATTTGGATAATTGCTTCATTATTGTTGCGAAGAATATCTGTGAGAAAAAAAAATGATGATATCAAAGCATGAATTGAATCGTTTCCGTTTGGATTCGTTTGGTCTTTGTTTGTTCGTCCACTAAGAACCTGTGCTGGTGATTGGTCCCTTTAGTTTTCATGTCACGGAGCTATCTGTTTATCCCCTTTGAGTTTGTATTCTTTCTATTTTGGAAATTTGCCATCTGCTTCTTTTTCGCCTTT

mRNA sequence

GTATGTAAGAATTTTTCTTATTCATAACCCACCTTTCTTCTTCCTGAAGATTCAATTCTCCGTAAAGTTTCTCCGCAATTCTCGCAGGTTCCGATTTACATCTCGTCAGAATCAGGTTCCGATTGCCATTTACAGACTTACAATCTCCATCTCCCTTTGAACTTTCCAGTTTCTTCAATAATCGTTCCGAGTTTCGTGACTCTATTTTGGAAGCCGTGTTGTTTCCAAAACCGCGCTCTGTTTTCTCTTCTTCTTCGACAGTACTTCCGTCGCTTGTAATCGACGAACTCCTGTACCGATTACCGTTAAACGACGAACGATTTGGCGTAGATCTACATCTCGTCAGAATGAGAGCGTTTTTCGGCGGCGATGGCACCGAAGACGACGCATAAACCGCATCTCTATCTCTTCCGTCGTCGTCCTCTTCATCTTTCTCCGAATCTTCCGCTTCGTTTCCGACGCGAGATTCAGAGATCCGTCTAATTTCACGTTTTCCACGGAAGAGCATCGCCGACCTGTTCCAGAACGTTCGACAGTGGCGTCGATTGAAAGAGAGGACGCTTCTAATCCACCGGCAACGAACGGCGGGAGTTTTATTAGAAGAGCGTTTATTGGTGCGAACTTGTCCCATACAAGTAACCTTCGGAGAGGACGGTTCTTCAGTTTCAATGGCGACGTTCTTCTTCCTGACGAAGATCGGACTGGAGCGAGACCGGCTGCTTTTACTACGATTTCCGGCATCGGCTCTAAGGAAGCTCATCAATGGCGGCGGAAACAGGTCGGTTCGACTGGGACTGGAAATCGATTTGGATAATTGCTTCATTATTGTTGCGAAGAATATCTGTGAGAAAAAAAAATGATGATATCAAAGCATGAATTGAATCGTTTCCGTTTGGATTCGTTTGGTCTTTGTTTGTTCGTCCACTAAGAACCTGTGCTGGTGATTGGTCCCTTTAGTTTTCATGTCACGGAGCTATCTGTTTATCCCCTTTGAGTTTGTATTCTTTCTATTTTGGAAATTTGCCATCTGCTTCTTTTTCGCCTTT

Coding sequence (CDS)

ATGGCGACGTTCTTCTTCCTGACGAAGATCGGACTGGAGCGAGACCGGCTGCTTTTACTACGATTTCCGGCATCGGCTCTAAGGAAGCTCATCAATGGCGGCGGAAACAGGTCGGTTCGACTGGGACTGGAAATCGATTTGGATAATTGCTTCATTATTGTTGCGAAGAATATCTGTGAGAAAAAAAAATGA

Protein sequence

MATFFFLTKIGLERDRLLLLRFPASALRKLINGGGNRSVRLGLEIDLDNCFIIVAKNICEKKK
Homology
[Close]
BLAST of MELO.jh019213.1 vs. NCBI nr
Match: KAF7818594.1 (hypothetical protein G2W53_024049 [Senna tora])

HSP 1 Score: 49.7 bits (117), Expect = 6.97e-05
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 0 

Query: 1   MATFFFLTKIGLERD--RLLLLRFPASALRKLINGGGNRSVRLGLEIDLDNCFIIV 54
           MA  FFLT IGL+ D  RLLL   P   L+ LINGGGN SVR GLE+ L + F+ +
Sbjct: 243 MAVVFFLTNIGLDLDLPRLLL---PTLLLKNLINGGGNFSVRPGLEMGLADSFMFI 295

[Close]
BLAST of MELO.jh019213.1 vs. NCBI nr
Match: KAF7807101.1 (hypothetical protein G2W53_039262 [Senna tora])

HSP 1 Score: 47.4 bits (111), Expect = 2.80e-04
Identity = 28/53 (52.83%), Postives = 34/53 (64.15%), Query Frame = 0 

Query: 2   ATFFFLTKIGLERDRLLLLRFPASALRKLINGGGNRSVRLGLEIDLDNCFIIV 54
           A  FFLT IGL+ D  LLL  P   L+ LING GN SVR GLE+ L + F+ +
Sbjct: 49  AVVFFLTNIGLDLDLPLLL-LPTLLLKNLINGSGNFSVRPGLEMGLADSFMFI 100

[Close]
BLAST of MELO.jh019213.1 vs. ExPASy TrEMBL
Match: M5W4P4 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa014044mg PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.60e-09
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 1  MATFFFLTKIGLERDRLLLLRFPASALRKLINGGGNRSVRLGLEIDLDNCFIIVAK 56
          MA FFFLT IGLER+R LLL  P   LR L NGGGN SVR GL++   + FI + +
Sbjct: 14 MAVFFFLTNIGLERNRPLLL-LPTLVLRNLTNGGGNLSVRPGLDMGFADSFIFLTQ 68

The following BLAST results are available for this feature:
BLAST of MELO.jh019213.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF7818594.16.97e-0555.36hypothetical protein G2W53_024049 [Senna tora][more]
KAF7807101.12.80e-0452.83hypothetical protein G2W53_039262 [Senna tora][more]
BLAST of MELO.jh019213.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh019213.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
M5W4P47.60e-0957.14Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa014044mg PE=4 SV=1[more]
BLAST of MELO.jh019213.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh019213.1.t1MELO.jh019213.1.t1mRNA