MELO.jh018467.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh018467.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr08: 15513182 .. 15513409 (-)
RNA-Seq ExpressionMELO.jh018467.1
SyntenyMELO.jh018467.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TACACAGGGGAAGAGATAGACGAAGGGAGAAGAAATGAAAAATGAAAGATCAAGAACTCACCGGCAACGATATGGGTCTCCTCGTTGTGGGTCTCCGTCGCCGAGAAGAAAGGATGTGGAGATGAGAAGAATGGGGTTTTCGTCGTGCGTCGTTCGTCGTTAGTGAGGGGAGGGATTTTGAAGAAGGAAAATGGAGTTTGCGGGAAGAAGGAAAGATATGGATTTTGA

mRNA sequence

TACACAGGGGAAGAGATAGACGAAGGGAGAAGAAATGAAAAATGAAAGATCAAGAACTCACCGGCAACGATATGGGTCTCCTCGTTGTGGGTCTCCGTCGCCGAGAAGAAAGGATGTGGAGATGAGAAGAATGGGGTTTTCGTCGTGCGTCGTTCGTCGTTAGTGAGGGGAGGGATTTTGAAGAAGGAAAATGGAGTTTGCGGGAAGAAGGAAAGATATGGATTTTGA

Coding sequence (CDS)

ATGAAAAATGAAAGATCAAGAACTCACCGGCAACGATATGGGTCTCCTCGTTGTGGGTCTCCGTCGCCGAGAAGAAAGGATGTGGAGATGAGAAGAATGGGGTTTTCGTCGTGCGTCGTTCGTCGTTAG

Protein sequence

MKNERSRTHRQRYGSPRCGSPSPRRKDVEMRRMGFSSCVVRR
Homology
[Close]
BLAST of MELO.jh018467.1 vs. NCBI nr
Match: KAA0034002.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK02801.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 50.1 bits (118), Expect = 8.99e-06
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 12 RYGSPRCGSPSPRRKDVEMRRMG----FSSCVV 40
          RYGSPR GSPS RRKD+EMRRMG    FSSCVV
Sbjct: 10 RYGSPRHGSPSSRRKDMEMRRMGLRLGFSSCVV 42

[Close]
BLAST of MELO.jh018467.1 vs. ExPASy TrEMBL
Match: A0A5D3BST2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1418G00060 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.35e-06
Identity = 26/33 (78.79%), Postives = 27/33 (81.82%), Query Frame = 0 

Query: 12 RYGSPRCGSPSPRRKDVEMRRMG----FSSCVV 40
          RYGSPR GSPS RRKD+EMRRMG    FSSCVV
Sbjct: 10 RYGSPRHGSPSSRRKDMEMRRMGLRLGFSSCVV 42

The following BLAST results are available for this feature:
BLAST of MELO.jh018467.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034002.18.99e-0678.79CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK02801.1 CACTA en-... [more]
BLAST of MELO.jh018467.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh018467.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BST24.35e-0678.79CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
BLAST of MELO.jh018467.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh018467.1.t1MELO.jh018467.1.t1mRNA