MELO.jh018298.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh018298.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr08: 12042341 .. 12043310 (-)
RNA-Seq ExpressionMELO.jh018298.1
SyntenyMELO.jh018298.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCTTTAGATGTAAAGGACTGGACATGGAACCTATAATAGGAAATGGAGATCCCACATCACTTGCAAGACTTTGGTTGCAAGGGACACTGTTAAAGAAGAAAAAATCCAAAACCATAACTAGTTAGTAGGGCAGAAAAGGACGTGGTAGCCAGTGGCACCAGTGGAGGGACACGTGAATGTGCTGGTTGCGTCATCGGTTGGGTAAGTATAAGCATCAGGGCACCTGTCTTTGAAAAACTTAGAATAATCTGTGGGCCTACACCTCTCCGTAACACTAAAACAACAATACTTCTCCGTTTTGAAGACTTGGCAGGGGTTGTTGCACCCACCATCTGCCTTCAACGCCTCTGGGCACTCCCCATTGATGTCAGCGGTGCAACCCACGACCCTGTTGCATCCCTTAGACTTGGGTTTCAATTCCACTGGTATATTGAACCCGTCCACTAGAGATATGCCAAATATATCCAAATTCTTGCCTTGGTTTAACGAAAATTCAACCAAAGTATTGGGTGGTGAGCCGGAGAATTGGCATTCAAGTTTGCCGCCGCAGTCGCCAGTTTCGCAAATTCCGTGCCCTGTACTGTCAAACTTGCAATTGGTTCTGCCCCAGATTCTTCCCGTTGTAGGGGAGGGTAATTTCAAGAGCCAAGTCTGGTTTGTGTCCAGACGTCGTCCACCGCCGGGGTAGGCCGCTGCCCATACTGTGTAGGGGCAGTTATTGAGAACAGTGAAAGTGGAGAAACTGTCTTGTGGAATTAATGCACATCTTGTGATGAAACCAACACCGGTGTTTGCCATTGAGCCGAAGGGGAGAAGGGATCGGTCAAAATTTGGATCCATTTTCATTATTTGAGCTTCAATTAAGTCATCCTTTATCATAACAGAAACAGAAATGAAAATGGAAATGGAAATGGAAATGGAAATGTGATGTTTGCAGCAAAACAAGAACATGGCTGGAATTTGGTGGA

mRNA sequence

AGCCTTTAGATGTAAAGGACTGGACATGGAACCTATAATAGGAAATGGAGATCCCACATCACTTGCAAGACTTTGGTTGCAAGGGACACTGTTAAAGAAGAAAAAATCCAAAACCATAACTAGTTAGTAGGGCAGAAAAGGACGTGGTAGCCAGTGGCACCAGTGGAGGGACACGTGAATGTGCTGGTTGCGTCATCGGTTGGGTAAGTATAAGCATCAGGGCACCTGTCTTTGAAAAACTTAGAATAATCTGTGGGCCTACACCTCTCCGTAACACTAAAACAACAATACTTCTCCGTTTTGAAGACTTGGCAGGGGTTGTTGCACCCACCATCTGCCTTCAACGCCTCTGGGCACTCCCCATTGATGTCAGCGGTGCAACCCACGACCCTGTTGCATCCCTTAGACTTGGGTTTCAATTCCACTGGTATATTGAACCCGTCCACTAGAGATATGCCAAATATATCCAAATTCTTGCCTTGGTTTAACGAAAATTCAACCAAAGTATTGGGTGGTGAGCCGGAGAATTGGCATTCAAGTTTGCCGCCGCAGTCGCCAGTTTCGCAAATTCCGTGCCCTGTACTGTCAAACTTGCAATTGGTTCTGCCCCAGATTCTTCCCGTTGTAGGGGAGGGTAATTTCAAGAGCCAAGTCTGGTTTGTGTCCAGACGTCGTCCACCGCCGGGGTAGGCCGCTGCCCATACTGTGTAGGGGCAGTTATTGAGAACAGTGAAAGTGGAGAAACTGTCTTGTGGAATTAATGCACATCTTGTGATGAAACCAACACCGGTGTTTGCCATTGAGCCGAAGGGGAGAAGGGATCGGTCAAAATTTGGATCCATTTTCATTATTTGAGCTTCAATTAAGTCATCCTTTATCATAACAGAAACAGAAATGAAAATGGAAATGGAAATGGAAATGGAAATGTGATGTTTGCAGCAAAACAAGAACATGGCTGGAATTTGGTGGA

Coding sequence (CDS)

ATGTCAGCGGTGCAACCCACGACCCTGTTGCATCCCTTAGACTTGGGTTTCAATTCCACTGGTATATTGAACCCGTCCACTAGAGATATGCCAAATATATCCAAATTCTTGCCTTGGTTTAACGAAAATTCAACCAAAGTATTGGGTGGTGAGCCGGAGAATTGGCATTCAAGTTTGCCGCCGCAGTCGCCAGTTTCGCAAATTCCGTGCCCTGTACTGTCAAACTTGCAATTGGTTCTGCCCCAGATTCTTCCCGTTGTAGGGGAGGGTAATTTCAAGAGCCAAGTCTGGTTTGTGTCCAGACGTCGTCCACCGCCGGGGTAG

Protein sequence

MSAVQPTTLLHPLDLGFNSTGILNPSTRDMPNISKFLPWFNENSTKVLGGEPENWHSSLPPQSPVSQIPCPVLSNLQLVLPQILPVVGEGNFKSQVWFVSRRRPPPG
Homology
BLAST of MELO.jh018298.1 vs. NCBI nr
Match: KAG5539682.1 (hypothetical protein RHGRI_020030 [Rhododendron griersonianum])

HSP 1 Score: 87.8 bits (216), Expect = 9.00e-18
Identity = 53/108 (49.07%), Postives = 58/108 (53.70%), Query Frame = 0

Query: 1   MSAVQPTTLLHPLDLGFNSTGILNPSTRDMPNISKFLPWFNENSTKVLGGEPENWHSSLP 60
           MSAV     +HP ++G  S G LNPSTRDM   SKF  WF+  S  VLGG P   HS  P
Sbjct: 203 MSAVHLMPRVHPPEVGLKSIGTLNPSTRDMSKKSKFWNWFSAYSASVLGGWPNAEHSRTP 262

Query: 61  PQSPVSQIPCPVLSNLQLVLPQI-LPVVGEGNFKSQVWFVSRRRPPPG 107
           PQSPV   P P  S LQ V      P V  G    QV  + R RPPPG
Sbjct: 263 PQSPVWHDPRPAPSKLQPVRAHTRAPAVPAGGLMVQVSPLLRGRPPPG 310

BLAST of MELO.jh018298.1 vs. NCBI nr
Match: KAF9827529.1 (hypothetical protein H0E87_017050, partial [Populus deltoides])

HSP 1 Score: 71.6 bits (174), Expect = 3.02e-13
Identity = 45/101 (44.55%), Postives = 50/101 (49.50%), Query Frame = 0

Query: 14  DLGFNSTGILNPSTRDMPNISKFLPWFNENSTKVLGGEPENWHSSLPPQSPVSQIPCPVL 73
           D G  S G LNPSTRDM   SK L  F   S  V GG P+ WH   P QSPVS +P P  
Sbjct: 33  DTGLKSMGTLNPSTRDMSKKSKLLNRFKAYSASVFGGCPKAWHCKSPLQSPVSHVPHPAP 92

Query: 74  SNLQLVLPQI-------LPVVGEGNFKSQVWFVSRRRPPPG 107
           S L LV PQI         V+   +  S +W      PPPG
Sbjct: 93  SKLHLVHPQIRACVVPAFAVMVHDSPGSSLW------PPPG 127

BLAST of MELO.jh018298.1 vs. NCBI nr
Match: KAG5593145.1 (hypothetical protein H5410_043659 [Solanum commersonii])

HSP 1 Score: 53.5 bits (127), Expect = 6.79e-06
Identity = 34/78 (43.59%), Postives = 37/78 (47.44%), Query Frame = 0

Query: 30  MPNISKFLPWFNENSTKVLGGEPENWHSSLPPQSPVSQIPCPVLSNLQLVLPQILPVVGE 89
           M   SK L W    S +V GG P   H   PPQSPV   P    S L  V P I  +V  
Sbjct: 1   MSQKSKLLNWSKAYSARVFGGLPYPEHCRTPPQSPVMHEPLLAPSKLHPVRPHICAIVVP 60

Query: 90  -GNFKSQVWFVSRRRPPP 106
            G   + VW  SRRRPPP
Sbjct: 61  LGASMTHVWPRSRRRPPP 78

BLAST of MELO.jh018298.1 vs. NCBI nr
Match: KAF7810249.1 (methyl-CpG-binding domain-containing protein 13-like [Senna tora])

HSP 1 Score: 52.8 bits (125), Expect = 3.29e-05
Identity = 32/65 (49.23%), Postives = 37/65 (56.92%), Query Frame = 0

Query: 44   STKVLGGEPENWHSSLPPQSPVSQIPCPVLSNLQLVLPQILPV-VGEGNFKSQVWFVSRR 103
            S  VLGG P   H   P QSPV   P PV S LQ V PQ+  + V  G +   +W +SRR
Sbjct: 1067 SANVLGGTPHPLHWRPPVQSPVWHRPRPVPSKLQPVRPQMRTMGVPGGTWTFHLWPLSRR 1126

Query: 104  RPPPG 107
            RPPPG
Sbjct: 1127 RPPPG 1131

BLAST of MELO.jh018298.1 vs. NCBI nr
Match: KYP65594.1 (hypothetical protein KK1_011842 [Cajanus cajan])

HSP 1 Score: 49.7 bits (117), Expect = 3.52e-05
Identity = 33/79 (41.77%), Postives = 38/79 (48.10%), Query Frame = 0

Query: 30  MPNISKFLPWFNENSTKVLGGEPENWHSSLPPQSPVSQIPCPVLSNLQLVLPQI-LPVVG 89
           M   SK L WF+  S +VLGG P   HS  PPQSPV Q P P  S L  V  Q+  P V 
Sbjct: 1   MSKKSKLLYWFSAYSARVLGGVPYALHSKTPPQSPVWQCPRPEPSKLHPVRAQMRAPFVP 60

Query: 90  EGNFKSQVWFVSRRRPPPG 107
               ++         PPPG
Sbjct: 61  AATSRAHDCPEFSLLPPPG 79

BLAST of MELO.jh018298.1 vs. ExPASy TrEMBL
Match: A0A7C9E2Z8 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.00e-05
Identity = 35/88 (39.77%), Postives = 46/88 (52.27%), Query Frame = 0

Query: 21  GILNPSTRDMPNISKFL-PWFNENSTKVLGGEPEN-WHSSLPPQSPVSQIPCPVLSNLQL 80
           G LNPSTR  P   K L PW++ N   V G  P +  HSS PPQSPV+ + CP + N+  
Sbjct: 2   GRLNPSTRLTPYEDKSLWPWWSVNWASVAGATPPSPSHSSRPPQSPVAHLRCPPV-NVHP 61

Query: 81  VLPQILPVVGEGNFKSQVWFVSRRRPPP 106
           V  Q+ P       +++ W    R  PP
Sbjct: 62  VRAQMRPDQWVAGARNERWVRVWRANPP 88

BLAST of MELO.jh018298.1 vs. ExPASy TrEMBL
Match: A0A151TEX4 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_011842 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.70e-05
Identity = 33/79 (41.77%), Postives = 38/79 (48.10%), Query Frame = 0

Query: 30  MPNISKFLPWFNENSTKVLGGEPENWHSSLPPQSPVSQIPCPVLSNLQLVLPQI-LPVVG 89
           M   SK L WF+  S +VLGG P   HS  PPQSPV Q P P  S L  V  Q+  P V 
Sbjct: 1   MSKKSKLLYWFSAYSARVLGGVPYALHSKTPPQSPVWQCPRPEPSKLHPVRAQMRAPFVP 60

Query: 90  EGNFKSQVWFVSRRRPPPG 107
               ++         PPPG
Sbjct: 61  AATSRAHDCPEFSLLPPPG 79

BLAST of MELO.jh018298.1 vs. ExPASy TrEMBL
Match: A0A2P2P4V9 (Protein P21-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.05e-04
Identity = 30/67 (44.78%), Postives = 34/67 (50.75%), Query Frame = 0

Query: 41  NENSTKVLGGEPENWHSSLPPQSPVSQIPCPVLSNLQLVLPQILPVVGEGNFKSQVWFVS 100
           +E S  V GG P   HS  P QSP+S +PCP   NLQLV     P     N  +  W   
Sbjct: 3   SEYSANVTGGAPLPRHSRSPLQSPLSHLPCPDPLNLQLVRAHRRPRSVPLN--THFWPWL 62

Query: 101 RRRPPPG 107
           RR PPPG
Sbjct: 63  RRAPPPG 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG5539682.19.00e-1849.07hypothetical protein RHGRI_020030 [Rhododendron griersonianum][more]
KAF9827529.13.02e-1344.55hypothetical protein H0E87_017050, partial [Populus deltoides][more]
KAG5593145.16.79e-0643.59hypothetical protein H5410_043659 [Solanum commersonii][more]
KAF7810249.13.29e-0549.23methyl-CpG-binding domain-containing protein 13-like [Senna tora][more]
KYP65594.13.52e-0541.77hypothetical protein KK1_011842 [Cajanus cajan][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7C9E2Z81.00e-0539.77Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A151TEX41.70e-0541.77Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_011842 PE=4 SV=1[more]
A0A2P2P4V92.05e-0444.78Protein P21-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh018298.1.t1MELO.jh018298.1.t1mRNA