MELO.jh018201.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh018201.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPre-mRNA-processing factor 39 isoform X3
Locationchr08: 9939261 .. 9939461 (+)
RNA-Seq ExpressionMELO.jh018201.1
SyntenyMELO.jh018201.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AGATGAAGCGAGCATAGTGACACCTTATGTGGGGAATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCCATGGAAAATTTGTTGTATGAAGAAGTGCTTTTTATTAGTTTTCTTGTGATGTATTGAGTTTTCTAAAACTGGGTAGTTTTTTATTTAGGTTTGTTCTCAAA

mRNA sequence

AGATGAAGCGAGCATAGTGACACCTTATGTGGGGAATGCGGTGAGAACTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCCATGGAAAATTTGTTGTATGAAGAAGTGCTTTTTATTAGTTTTCTTGTGATGTATTGAGTTTTCTAAAACTGGGTAGTTTTTTATTTAGGTTTGTTCTCAAA

Coding sequence (CDS)

ATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTATGAGAAATGGTTCCATGGAAAATTTGTTGTATGAAGAAGTGCTTTTTATTAGTTTTCTTGTGATGTATTGA

Protein sequence

MLQMNFGFAVISMRNGSMENLLYEEVLFISFLVMY
Homology
BLAST of MELO.jh018201.1 vs. NCBI nr
Match: TYK10342.1 (uncharacterized protein E5676_scaffold367G00170 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 5.04e-10
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 2  LQMNFGFAVISMRNGSMENLLYEEVL-FISFLVMY 35
          LQMNFGFAVISMRNGSM NLLYEE+L FISFLVMY
Sbjct: 34 LQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 68

BLAST of MELO.jh018201.1 vs. NCBI nr
Match: XP_016903219.1 (PREDICTED: uncharacterized protein LOC103502427 isoform X2 [Cucumis melo] >KAA0039695.1 pre-mRNA-processing factor 39 isoform X3 [Cucumis melo var. makuwa] >TYJ96187.1 pre-mRNA-processing factor 39 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 52.4 bits (124), Expect = 6.06e-07
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 1   MLQMNFGFAVISMRNGSMENLLYEEVL-FISFLVMY 35
           MLQMNFGFAVI +RNGS  NLLYEE+L FISFLV+Y
Sbjct: 103 MLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 138

BLAST of MELO.jh018201.1 vs. NCBI nr
Match: XP_016903218.1 (PREDICTED: uncharacterized protein LOC103502427 isoform X1 [Cucumis melo])

HSP 1 Score: 52.4 bits (124), Expect = 6.72e-07
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 1   MLQMNFGFAVISMRNGSMENLLYEEVL-FISFLVMY 35
           MLQMNFGFAVI +RNGS  NLLYEE+L FISFLV+Y
Sbjct: 109 MLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 144

BLAST of MELO.jh018201.1 vs. ExPASy TrEMBL
Match: A0A5D3CGG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00170 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.44e-10
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 2  LQMNFGFAVISMRNGSMENLLYEEVL-FISFLVMY 35
          LQMNFGFAVISMRNGSM NLLYEE+L FISFLVMY
Sbjct: 34 LQMNFGFAVISMRNGSMGNLLYEEMLQFISFLVMY 68

BLAST of MELO.jh018201.1 vs. ExPASy TrEMBL
Match: A0A5D3BAP5 (Pre-mRNA-processing factor 39 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold261G00140 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.94e-07
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 1   MLQMNFGFAVISMRNGSMENLLYEEVL-FISFLVMY 35
           MLQMNFGFAVI +RNGS  NLLYEE+L FISFLV+Y
Sbjct: 103 MLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 138

BLAST of MELO.jh018201.1 vs. ExPASy TrEMBL
Match: A0A1S4E4R6 (uncharacterized protein LOC103502427 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502427 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.94e-07
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 1   MLQMNFGFAVISMRNGSMENLLYEEVL-FISFLVMY 35
           MLQMNFGFAVI +RNGS  NLLYEE+L FISFLV+Y
Sbjct: 103 MLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 138

BLAST of MELO.jh018201.1 vs. ExPASy TrEMBL
Match: A0A1S4E4Q8 (uncharacterized protein LOC103502427 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502427 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.25e-07
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0

Query: 1   MLQMNFGFAVISMRNGSMENLLYEEVL-FISFLVMY 35
           MLQMNFGFAVI +RNGS  NLLYEE+L FISFLV+Y
Sbjct: 109 MLQMNFGFAVIFVRNGSTGNLLYEEMLQFISFLVVY 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK10342.15.04e-1091.43uncharacterized protein E5676_scaffold367G00170 [Cucumis melo var. makuwa][more]
XP_016903219.16.06e-0780.56PREDICTED: uncharacterized protein LOC103502427 isoform X2 [Cucumis melo] >KAA00... [more]
XP_016903218.16.72e-0780.56PREDICTED: uncharacterized protein LOC103502427 isoform X1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CGG92.44e-1091.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BAP52.94e-0780.56Pre-mRNA-processing factor 39 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A1S4E4R62.94e-0780.56uncharacterized protein LOC103502427 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S4E4Q83.25e-0780.56uncharacterized protein LOC103502427 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh018201.1.t1MELO.jh018201.1.t1mRNA