MELO.jh017940.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh017940.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr08: 7036068 .. 7036253 (-)
RNA-Seq ExpressionMELO.jh017940.1
SyntenyMELO.jh017940.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCGAGCGGTTGGATTGTTCGAGTGATTCGACGGTGGGAAATCAAATGCGAGCGGTGGATGGCGGAGGGAGAAAATGACGATGATCTGTTGGATTGTTCGAGTGATTCGGCGGCCGAAAATCGTATACGGCTGAGGTCTGAGGGCTGGGAGTGGTGGATGGCAGAGGGAGACGACGGCTGA

mRNA sequence

ATGTCTGCGAGCGGTTGGATTGTTCGAGTGATTCGACGGTGGGAAATCAAATGCGAGCGGTGGATGGCGGAGGGAGAAAATGACGATGATCTGTTGGATTGTTCGAGTGATTCGGCGGCCGAAAATCGTATACGGCTGAGGTCTGAGGGCTGGGAGTGGTGGATGGCAGAGGGAGACGACGGCTGA

Coding sequence (CDS)

ATGTCTGCGAGCGGTTGGATTGTTCGAGTGATTCGACGGTGGGAAATCAAATGCGAGCGGTGGATGGCGGAGGGAGAAAATGACGATGATCTGTTGGATTGTTCGAGTGATTCGGCGGCCGAAAATCGTATACGGCTGAGGTCTGAGGGCTGGGAGTGGTGGATGGCAGAGGGAGACGACGGCTGA

Protein sequence

MSASGWIVRVIRRWEIKCERWMAEGENDDDLLDCSSDSAAENRIRLRSEGWEWWMAEGDDG
Homology
[Close]
BLAST of MELO.jh017940.1 vs. NCBI nr
Match: KAA0031723.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 8.47e-19
Identity = 46/71 (64.79%), Postives = 46/71 (64.79%), Query Frame = 0 

Query: 1  MSASGWIVRVIRRWEIKCERWMAEGENDDDLLDCSSDSAAENRIRLRS-----------E 60
          MSASGWIVRVIRR EIKCERWMAEGENDDDL           R RLRS           E
Sbjct: 1  MSASGWIVRVIRRREIKCERWMAEGENDDDL----------GRRRLRSGSGGWRRETTVE 60

[Close]
BLAST of MELO.jh017940.1 vs. ExPASy TrEMBL
Match: A0A5A7SNB3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005110 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 4.10e-19
Identity = 46/71 (64.79%), Postives = 46/71 (64.79%), Query Frame = 0 

Query: 1  MSASGWIVRVIRRWEIKCERWMAEGENDDDLLDCSSDSAAENRIRLRS-----------E 60
          MSASGWIVRVIRR EIKCERWMAEGENDDDL           R RLRS           E
Sbjct: 1  MSASGWIVRVIRRREIKCERWMAEGENDDDL----------GRRRLRSGSGGWRRETTVE 60

The following BLAST results are available for this feature:
BLAST of MELO.jh017940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031723.18.47e-1964.79retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO.jh017940.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh017940.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SNB34.10e-1964.79Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO.jh017940.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh017940.1.t1MELO.jh017940.1.t1mRNA