MELO.jh017550.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh017550.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Agamous-like MADS-box protein AGL61-like isoform X1
Location	chr08: 4487819 .. 4488510 (-)
RNA-Seq Expression	MELO.jh017550.1
Synteny	MELO.jh017550.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGATCGATTCACCAGCTTGGGCGGCGACAGAGGCCCGAGCAGTGGAATTCTGGACGGAAGTGGCTTCGAGAAAGAAAGCGAAAGCGCGTGAGGTAACGGAAGGGTGGTGGAATGAAGGGGAATTTGAAATGGGGTTGGACGGATGCCTTGAGGACGTGTTTTGGAAGTTGCGAGAAGGTGGGTGGAGGGAAGAAGATGTCAGAGATATGATGATGATGGACCGCCATGATCGGAGCTTGGAACAAAATGAGACGACAATGGAGAAACTTAGAGTATCAGTAGGTGAAATTTTACTTAGTGGGGGATGGAGCAGAGACGATGTGGTGTACTCTCTTGATCTTGAATGCAATTCCGCCATTGTTATTCCTGACGAAGAATCAACATTTGAAATCAATCTTCATCATTATCATCATCATCAGCCAATTAGAATCCCTCAAGTAGAACGCAAGAAAAAGCCCCGCAACACCACCACCACCAACCACCTTAAAATGCCCCCATTTTTCTTTGCACCACATCGGAACTTAATCCTCTAACGTCTTTTCGTCTTGCTTTTCCTCTTAATTAGCCTAGTTTACCTTCACATGAATGACCCCTTGTTCATTACGTAAATTATACAGTGTACATAAATACACATTCTTTTTTCTTTTGGTTAATAAAAGGAGAGACGATAAAGGTCCAATTTTGATCCCA

mRNA sequence

GGTGATCGATTCACCAGCTTGGGCGGCGACAGAGGCCCGAGCAGTGGAATTCTGGACGGAAGTGGCTTCGAGAAAGAAAGCGAAAGCGCGTGAGGTAACGGAAGGGTGGTGGAATGAAGGGGAATTTGAAATGGGGTTGGACGGATGCCTTGAGGACGTGTTTTGGAAGTTGCGAGAAGGTGGGTGGAGGGAAGAAGATGTCAGAGATATGATGATGATGGACCGCCATGATCGGAGCTTGGAACAAAATGAGACGACAATGGAGAAACTTAGAGTATCAGTAGGTGAAATTTTACTTAGTGGGGGATGGAGCAGAGACGATGTGGTGTACTCTCTTGATCTTGAATGCAATTCCGCCATTGTTATTCCTGACGAAGAATCAACATTTGAAATCAATCTTCATCATTATCATCATCATCAGCCAATTAGAATCCCTCAAGTAGAACGCAAGAAAAAGCCCCGCAACACCACCACCACCAACCACCTTAAAATGCCCCCATTTTTCTTTGCACCACATCGGAACTTAATCCTCTAACGTCTTTTCGTCTTGCTTTTCCTCTTAATTAGCCTAGTTTACCTTCACATGAATGACCCCTTGTTCATTACGTAAATTATACAGTGTACATAAATACACATTCTTTTTTCTTTTGGTTAATAAAAGGAGAGACGATAAAGGTCCAATTTTGATCCCA

Coding sequence (CDS)

ATGGGGTTGGACGGATGCCTTGAGGACGTGTTTTGGAAGTTGCGAGAAGGTGGGTGGAGGGAAGAAGATGTCAGAGATATGATGATGATGGACCGCCATGATCGGAGCTTGGAACAAAATGAGACGACAATGGAGAAACTTAGAGTATCAGTAGGTGAAATTTTACTTAGTGGGGGATGGAGCAGAGACGATGTGGTGTACTCTCTTGATCTTGAATGCAATTCCGCCATTGTTATTCCTGACGAAGAATCAACATTTGAAATCAATCTTCATCATTATCATCATCATCAGCCAATTAGAATCCCTCAAGTAGAACGCAAGAAAAAGCCCCGCAACACCACCACCACCAACCACCTTAAAATGCCCCCATTTTTCTTTGCACCACATCGGAACTTAATCCTCTAA

Protein sequence

MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGWSRDDVVYSLDLECNSAIVIPDEESTFEINLHHYHHHQPIRIPQVERKKKPRNTTTTNHLKMPPFFFAPHRNLIL

Homology

[Close]

BLAST of MELO.jh017550.1 vs. NCBI nr
Match: XP_008441112.1 (PREDICTED: uncharacterized protein LOC103485339 [Cucumis melo] >KAA0036382.1 uncharacterized protein E6C27_scaffold18G001830 [Cucumis melo var. makuwa] >TYK12778.1 uncharacterized protein E5676_scaffold255G003670 [Cucumis melo var. makuwa])

HSP 1 Score: 281 bits (719), Expect = 2.56e-92
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW 60
           MGLDGCLEDVFWKLREGGWRE+DVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW
Sbjct: 233 MGLDGCLEDVFWKLREGGWREDDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW 292

Query: 61  SRDDVVYSLDLECNSAIVIPDEESTFEINLHHYHHHQPIRIPQVERKKKPRNTTTTNHLK 120
           SRDDVVYSLDLECNSAIVIPDEESTFEINLHHYHHHQPIRIPQVERKKKPRNTTTTNHLK
Sbjct: 293 SRDDVVYSLDLECNSAIVIPDEESTFEINLHHYHHHQPIRIPQVERKKKPRNTTTTNHLK 352

Query: 121 MPPFFFAPHRNLIL 134
           MPPFFFAPHRNLIL
Sbjct: 353 MPPFFFAPHRNLIL 366

[Close]

BLAST of MELO.jh017550.1 vs. NCBI nr
Match: XP_004143531.1 (uncharacterized protein LOC101204059 [Cucumis sativus] >KGN48652.1 hypothetical protein Csa_003200 [Cucumis sativus])

HSP 1 Score: 239 bits (609), Expect = 1.11e-75
Identity = 121/134 (90.30%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW 60
           MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNE TMEKLRVSV EILLSGGW
Sbjct: 235 MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNEATMEKLRVSVCEILLSGGW 294

Query: 61  SRDDVVYSLDLECNSAIVIPDEESTFEINLHHYHHHQPIRIPQVERKKKPRNTTTTNHLK 120
           SRDDVVYSLDLE +SA VIP+EESTFEINLHH H   PIRIPQVERK KPRNTTT+ HLK
Sbjct: 295 SRDDVVYSLDLEGHSASVIPEEESTFEINLHHQH--LPIRIPQVERKIKPRNTTTS-HLK 354

Query: 121 MPPFFFAPHRNLIL 134
           MPPFFFAPHRNLIL
Sbjct: 355 MPPFFFAPHRNLIL 365

[Close]

BLAST of MELO.jh017550.1 vs. NCBI nr
Match: XP_038883397.1 (uncharacterized protein LOC120074372 [Benincasa hispida])

HSP 1 Score: 226 bits (577), Expect = 7.12e-71
Identity = 115/134 (85.82%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW 60
           MGLDGCLEDVFWKLREGGWREEDVRDMMMMD HDR LEQ+  TMEKLR SV EILLSGGW
Sbjct: 234 MGLDGCLEDVFWKLREGGWREEDVRDMMMMDGHDRRLEQSGPTMEKLRASVCEILLSGGW 293

Query: 61  SRDDVVYSLDLECNSAIVIPDEESTFEINLHHYHHHQPIRIPQVERKKKPRNTTTTNHLK 120
           SRDDVVYSLDLE NSAIVIP+EESTFEINL H   H+PIRIPQVERK+KPR++TT NHLK
Sbjct: 294 SRDDVVYSLDLEDNSAIVIPEEESTFEINLCH---HRPIRIPQVERKEKPRSSTT-NHLK 353

Query: 121 MPPFFFAPHRNLIL 134
           MPPFFFAP+RNLIL
Sbjct: 354 MPPFFFAPYRNLIL 363

[Close]

BLAST of MELO.jh017550.1 vs. NCBI nr
Match: XP_022977897.1 (uncharacterized protein LOC111478051 [Cucurbita maxima])

HSP 1 Score: 201 bits (511), Expect = 8.65e-61
Identity = 102/142 (71.83%), Postives = 117/142 (82.39%), Query Frame = 0


Query: 1   MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW 60
           MGLDGCLEDV WKLR+GGWREED+RDMMMMD HDRSLEQ+  T+EKL+VSV EILLSGGW
Sbjct: 237 MGLDGCLEDVLWKLRQGGWREEDIRDMMMMDGHDRSLEQSRATIEKLKVSVCEILLSGGW 296

Query: 61  SRDDVVYSLDLE----CNSAIVIPDEE----STFEINLHHYHHHQPIRIPQVERKKKPRN 120
           SRDDV+YSL LE     NSAIVIP+EE    STFEINLHH   H+P ++PQVE KKK ++
Sbjct: 297 SRDDVMYSLGLEDNSNSNSAIVIPEEEEEEESTFEINLHH---HRPTKVPQVECKKKAKS 356

Query: 121 TTTTNHLKMPPFFFAPHRNLIL 134
            ++TNH  M PF+FAPHRNLIL
Sbjct: 357 RSSTNHHNMSPFYFAPHRNLIL 375

[Close]

BLAST of MELO.jh017550.1 vs. NCBI nr
Match: XP_023544847.1 (uncharacterized protein LOC111804319 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197 bits (500), Expect = 4.42e-59
Identity = 102/149 (68.46%), Postives = 116/149 (77.85%), Query Frame = 0


Query: 1   MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW 60
           MGLDGCLEDV WKLR+GGWREED+RDMMMMD HDRSL+Q+  T+EKL+VSV EILLSGGW
Sbjct: 235 MGLDGCLEDVLWKLRQGGWREEDIRDMMMMDGHDRSLKQSRATIEKLKVSVCEILLSGGW 294

Query: 61  SRDDVVYSLDLE------------CNSAIVIPDEE---STFEINLHHYHHHQPIRIPQVE 120
           SRDDV+YSL LE             NSAIVIP+EE   STFEINLHH   H+P  +PQVE
Sbjct: 295 SRDDVMYSLGLEDVSNSNSNSNSNSNSAIVIPEEEEEESTFEINLHH---HRPTIVPQVE 354

Query: 121 RKKKPRNTTTTNHLKMPPFFFAPHRNLIL 134
           RKKK +  ++TNH  M PF+FAPHRNLIL
Sbjct: 355 RKKKAKARSSTNHHNMSPFYFAPHRNLIL 380

[Close]

BLAST of MELO.jh017550.1 vs. ExPASy TrEMBL
Match: A0A5A7SYS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G003670 PE=4 SV=1)

HSP 1 Score: 281 bits (719), Expect = 1.24e-92
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW 60
           MGLDGCLEDVFWKLREGGWRE+DVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW
Sbjct: 233 MGLDGCLEDVFWKLREGGWREDDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW 292

Query: 61  SRDDVVYSLDLECNSAIVIPDEESTFEINLHHYHHHQPIRIPQVERKKKPRNTTTTNHLK 120
           SRDDVVYSLDLECNSAIVIPDEESTFEINLHHYHHHQPIRIPQVERKKKPRNTTTTNHLK
Sbjct: 293 SRDDVVYSLDLECNSAIVIPDEESTFEINLHHYHHHQPIRIPQVERKKKPRNTTTTNHLK 352

Query: 121 MPPFFFAPHRNLIL 134
           MPPFFFAPHRNLIL
Sbjct: 353 MPPFFFAPHRNLIL 366

[Close]

BLAST of MELO.jh017550.1 vs. ExPASy TrEMBL
Match: A0A1S3B2P9 (uncharacterized protein LOC103485339 OS=Cucumis melo OX=3656 GN=LOC103485339 PE=4 SV=1)

HSP 1 Score: 281 bits (719), Expect = 1.24e-92
Identity = 133/134 (99.25%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW 60
           MGLDGCLEDVFWKLREGGWRE+DVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW
Sbjct: 233 MGLDGCLEDVFWKLREGGWREDDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW 292

Query: 61  SRDDVVYSLDLECNSAIVIPDEESTFEINLHHYHHHQPIRIPQVERKKKPRNTTTTNHLK 120
           SRDDVVYSLDLECNSAIVIPDEESTFEINLHHYHHHQPIRIPQVERKKKPRNTTTTNHLK
Sbjct: 293 SRDDVVYSLDLECNSAIVIPDEESTFEINLHHYHHHQPIRIPQVERKKKPRNTTTTNHLK 352

Query: 121 MPPFFFAPHRNLIL 134
           MPPFFFAPHRNLIL
Sbjct: 353 MPPFFFAPHRNLIL 366

[Close]

BLAST of MELO.jh017550.1 vs. ExPASy TrEMBL
Match: A0A0A0KJT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497030 PE=4 SV=1)

HSP 1 Score: 239 bits (609), Expect = 5.36e-76
Identity = 121/134 (90.30%), Postives = 124/134 (92.54%), Query Frame = 0


Query: 1   MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW 60
           MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNE TMEKLRVSV EILLSGGW
Sbjct: 235 MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNEATMEKLRVSVCEILLSGGW 294

Query: 61  SRDDVVYSLDLECNSAIVIPDEESTFEINLHHYHHHQPIRIPQVERKKKPRNTTTTNHLK 120
           SRDDVVYSLDLE +SA VIP+EESTFEINLHH H   PIRIPQVERK KPRNTTT+ HLK
Sbjct: 295 SRDDVVYSLDLEGHSASVIPEEESTFEINLHHQH--LPIRIPQVERKIKPRNTTTS-HLK 354

Query: 121 MPPFFFAPHRNLIL 134
           MPPFFFAPHRNLIL
Sbjct: 355 MPPFFFAPHRNLIL 365

[Close]

BLAST of MELO.jh017550.1 vs. ExPASy TrEMBL
Match: A0A6J1IJQ3 (uncharacterized protein LOC111478051 OS=Cucurbita maxima OX=3661 GN=LOC111478051 PE=4 SV=1)

HSP 1 Score: 201 bits (511), Expect = 4.19e-61
Identity = 102/142 (71.83%), Postives = 117/142 (82.39%), Query Frame = 0


Query: 1   MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW 60
           MGLDGCLEDV WKLR+GGWREED+RDMMMMD HDRSLEQ+  T+EKL+VSV EILLSGGW
Sbjct: 237 MGLDGCLEDVLWKLRQGGWREEDIRDMMMMDGHDRSLEQSRATIEKLKVSVCEILLSGGW 296

Query: 61  SRDDVVYSLDLE----CNSAIVIPDEE----STFEINLHHYHHHQPIRIPQVERKKKPRN 120
           SRDDV+YSL LE     NSAIVIP+EE    STFEINLHH   H+P ++PQVE KKK ++
Sbjct: 297 SRDDVMYSLGLEDNSNSNSAIVIPEEEEEEESTFEINLHH---HRPTKVPQVECKKKAKS 356

Query: 121 TTTTNHLKMPPFFFAPHRNLIL 134
            ++TNH  M PF+FAPHRNLIL
Sbjct: 357 RSSTNHHNMSPFYFAPHRNLIL 375

[Close]

BLAST of MELO.jh017550.1 vs. ExPASy TrEMBL
Match: A0A6J1GEM3 (uncharacterized protein LOC111453239 OS=Cucurbita moschata OX=3662 GN=LOC111453239 PE=4 SV=1)

HSP 1 Score: 192 bits (489), Expect = 9.33e-58
Identity = 99/146 (67.81%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 1   MGLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGGW 60
           MGLDGCLEDV WKLR+GGWREED+RDMMMMD HDRSLEQ+   +EKL+VSV EILLSGGW
Sbjct: 237 MGLDGCLEDVLWKLRQGGWREEDIRDMMMMDGHDRSLEQSRAAIEKLKVSVCEILLSGGW 296

Query: 61  SRDDVVYSLDLE------CNSAIVIP------DEESTFEINLHHYHHHQPIRIPQVERKK 120
           SRDDV+YSL LE       NSAIVIP      +EE TFEINL H   H+P ++PQVERKK
Sbjct: 297 SRDDVMYSLGLEDISNSNSNSAIVIPQEEEEEEEEPTFEINLLH---HRPTKVPQVERKK 356

Query: 121 KPRNTTTTNHLKMPPFFFAPHRNLIL 134
           K ++ + TNH  M PF+F PHRNLIL
Sbjct: 357 KAKSRSATNHHNMSPFYFTPHRNLIL 379

[Close]

BLAST of MELO.jh017550.1 vs. TAIR 10
Match: AT2G22790.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67020.1); Has 111 Blast hits to 111 proteins in 33 species: Archae - 0; Bacteria - 44; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-09
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 2   GLDGCLEDVFWKLREGGWREEDVRDMMMMDRHDRSLEQNETTMEKLRVSVGEILLSGG 60
           GL  CL+D FWKLRE GW E+DVRDMMMMD    S++QN    ++ +    +++ + G
Sbjct: 235 GLTACLDDAFWKLREAGWTEDDVRDMMMMD----SVDQNTCIQQQTQTQSRDVVYAFG 288

The following BLAST results are available for this feature:

BLAST of MELO.jh017550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441112.1	2.56e-92	99.25	PREDICTED: uncharacterized protein LOC103485339 [Cucumis melo] >KAA0036382.1 unc...	[more]
XP_004143531.1	1.11e-75	90.30	uncharacterized protein LOC101204059 [Cucumis sativus] >KGN48652.1 hypothetical ...	[more]
XP_038883397.1	7.12e-71	85.82	uncharacterized protein LOC120074372 [Benincasa hispida]	[more]
XP_022977897.1	8.65e-61	71.83	uncharacterized protein LOC111478051 [Cucurbita maxima]	[more]
XP_023544847.1	4.42e-59	68.46	uncharacterized protein LOC111804319 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO.jh017550.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh017550.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYS6	1.24e-92	99.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B2P9	1.24e-92	99.25	uncharacterized protein LOC103485339 OS=Cucumis melo OX=3656 GN=LOC103485339 PE=...	[more]
A0A0A0KJT1	5.36e-76	90.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G497030 PE=4 SV=1	[more]
A0A6J1IJQ3	4.19e-61	71.83	uncharacterized protein LOC111478051 OS=Cucurbita maxima OX=3661 GN=LOC111478051...	[more]
A0A6J1GEM3	9.33e-58	67.81	uncharacterized protein LOC111453239 OS=Cucurbita moschata OX=3662 GN=LOC1114532...	[more]

BLAST of MELO.jh017550.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G22790.1	2.1e-09	46.55	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR32011:SF6	BNAA04G13250D PROTEIN	coord: 2..88
None	No IPR available	PANTHER	PTHR32011	OS08G0472400 PROTEIN	coord: 2..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh017550.1.t1	MELO.jh017550.1.t1	mRNA