MELO.jh016232.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh016232.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr07: 23214674 .. 23215865 (+)
RNA-Seq ExpressionMELO.jh016232.1
SyntenyMELO.jh016232.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCGACAAATTAAACTCCAACAAGTTCCTCGACAAATCAAGAATCTGAATCGTCTTGTTGGCGCCGAAGAACATAAACGCGTCGCCTTCAAGTTTGTTACGGGACAGATCAATGGAAGTGAAATTCAATCTCGACAAAGAAGAAGGGATTTTGCCAGAAAGTTGATTGTGTGAGAGAATCAAATCCGGGGCTTGTTCTCCGGCGAAATAGCCGAAGGAGTCAGGGATTTGTCCTGTTAATTGGTTCCGATCCAACCGGAGACCGCCCAAGCTAGGGAGTTCAGAGAGGGAACTTGGGATTTTTCCGGTGAGTTTGTTGAATGAGAGAGTAAGAATGAAGAGATTTTTTAGAGTGCTTAAGGAATCTGGGATTTCGCCGGAGAGACCGTTCCAGCTGAGGTCGAGGAATTTGAGGTTATGGAGTTTGGCTATGGTGGGTTGGATGGGGCCGGTGAGATTTGGGAGCTTGTGGAGCATAAGGGTTTGTAGGAATGGAAGGTCGCCGACTTCGGGTGGGATTTGGCCGGTGAGACGGTCGTCGGCGAAGATGGTGAGGGAGATGATTCGATGGGTAGTTCGATCGCATCTGACACAGTACCAATGGCAGCAATCTGTTTGTGGGTCCCAAGAGGTGAGAATGTAGGGATTGTTGAAGGCTTTTTTGATTTTTAGAAGCACTTTTTTGTCATTTGGATTGCAAAGCTCCGCAAAGGAAATGGTAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGGAGCCATGAGAGTTTGTTGAGATTTGAAGCCATGGATTTGGATTTGGATTTGGATTTGAGTGAGTAATTGTGGAGAGATTATATTTGGTTTGGATTGATTTATAAAGGTGAATGTTAGGAAGGGGTTTCGTGTGTGAATGTGCTTAATAGTGTTTTTTATGAGTGGAAGACAAAGAGTTCAATTATTAGCTCATGAAGATATGCATCGAAGAAGGTATAGACTTCAAAGTCAAACTATAGAGACGATTGGTTTGGATTTGGGTTTCTATATTTTTAATATAGGTTGAAGAGATATATCATCATTCATGATCTCAGCATTACCATTGATGAAATTAAGGAGCAATTGCATTAGATAACATTCTTACGGATAATAATTAATTTATTGTATAACCATTTTTATAAACACGGTGAATATAAGATACCAATAGATTCTA

mRNA sequence

TCCGACAAATTAAACTCCAACAAGTTCCTCGACAAATCAAGAATCTGAATCGTCTTGTTGGCGCCGAAGAACATAAACGCGTCGCCTTCAAGTTTGTTACGGGACAGATCAATGGAAGTGAAATTCAATCTCGACAAAGAAGAAGGGATTTTGCCAGAAAGTTGATTGTGTGAGAGAATCAAATCCGGGGCTTGTTCTCCGGCGAAATAGCCGAAGGAGTCAGGGATTTGTCCTGTTAATTGGTTCCGATCCAACCGGAGACCGCCCAAGCTAGGGAGTTCAGAGAGGGAACTTGGGATTTTTCCGGTGAGTTTGTTGAATGAGAGAGTAAGAATGAAGAGATTTTTTAGAGTGCTTAAGGAATCTGGGATTTCGCCGGAGAGACCGTTCCAGCTGAGGTCGAGGAATTTGAGGTTATGGAGTTTGGCTATGGTGGGTTGGATGGGGCCGGTGAGATTTGGGAGCTTGTGGAGCATAAGGGTTTGTAGGAATGGAAGGTCGCCGACTTCGGGTGGGATTTGGCCGGTGAGACGGTCGTCGGCGAAGATGGTGAGGGAGATGATTCGATGGGTAGTTCGATCGCATCTGACACAGTACCAATGGCAGCAATCTGTTTGTGGGTCCCAAGAGGTGAGAATGTAGGGATTGTTGAAGGCTTTTTTGATTTTTAGAAGCACTTTTTTGTCATTTGGATTGCAAAGCTCCGCAAAGGAAATGGTAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGGAGCCATGAGAGTTTGTTGAGATTTGAAGCCATGGATTTGGATTTGGATTTGGATTTGAGTGAGTAATTGTGGAGAGATTATATTTGGTTTGGATTGATTTATAAAGGTGAATGTTAGGAAGGGGTTTCGTGTGTGAATGTGCTTAATAGTGTTTTTTATGAGTGGAAGACAAAGAGTTCAATTATTAGCTCATGAAGATATGCATCGAAGAAGGTATAGACTTCAAAGTCAAACTATAGAGACGATTGGTTTGGATTTGGGTTTCTATATTTTTAATATAGGTTGAAGAGATATATCATCATTCATGATCTCAGCATTACCATTGATGAAATTAAGGAGCAATTGCATTAGATAACATTCTTACGGATAATAATTAATTTATTGTATAACCATTTTTATAAACACGGTGAATATAAGATACCAATAGATTCTA

Coding sequence (CDS)

ATGAAGAGATTTTTTAGAGTGCTTAAGGAATCTGGGATTTCGCCGGAGAGACCGTTCCAGCTGAGGTCGAGGAATTTGAGGTTATGGAGTTTGGCTATGGTGGGTTGGATGGGGCCGGTGAGATTTGGGAGCTTGTGGAGCATAAGGGTTTGTAGGAATGGAAGGTCGCCGACTTCGGGTGGGATTTGGCCGGTGAGACGGTCGTCGGCGAAGATGGTGAGGGAGATGATTCGATGGGTAGTTCGATCGCATCTGACACAGTACCAATGGCAGCAATCTGTTTGTGGGTCCCAAGAGGTGAGAATGTAG

Protein sequence

MKRFFRVLKESGISPERPFQLRSRNLRLWSLAMVGWMGPVRFGSLWSIRVCRNGRSPTSGGIWPVRRSSAKMVREMIRWVVRSHLTQYQWQQSVCGSQEVRM
Homology
[Close]
BLAST of MELO.jh016232.1 vs. NCBI nr
Match: PNX86247.1 (hypothetical protein L195_g042324 [Trifolium pratense])

HSP 1 Score: 96.3 bits (238), Expect = 5.57e-23
Identity = 53/98 (54.08%), Postives = 64/98 (65.31%), Query Frame = 0 

Query: 6   RVLKESGISPERPFQLRSRNLRLWSLAMVGWMGPVRFGSLWSIRVCRNGRSPTSGGIWPV 65
           R +++ G  P++   L  R+LRL SLA+ GW GPV FGSLW+ RV R G  PT GGIW  
Sbjct: 36  REMRKEGTEPDKLVLLIRRDLRLVSLAIAGWSGPVSFGSLWNSRVSRYGSWPTEGGIWAE 95

Query: 66  RRSSA--KMVREMIRWVVRSHLTQYQWQQSVCGSQEVR 101
           +   A  K+VREMIR V+RSH   YQ QQSV GS E R
Sbjct: 96  KFEGAESKIVREMIRCVLRSHSIVYQSQQSVFGSHEAR 133

[Close]
BLAST of MELO.jh016232.1 vs. NCBI nr
Match: KAG6423138.1 (hypothetical protein SASPL_113524 [Salvia splendens])

HSP 1 Score: 61.2 bits (147), Expect = 8.16e-09
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 0 

Query: 3   RFFRVLKESGISPERPFQLRSRNLRLWSLAMVGWMGPVRFGSLWSIRVCRNGRSPTSGGI 62
           RF   L++ G+ PE   Q+  R  RL S  M   +  +R GSLW +R  R GRSP + G+
Sbjct: 105 RFLSWLRKGGMGPETLVQVMVRLWRLVSFVMPRGIESMRLGSLWKVRDVRWGRSPMASGM 164

Query: 63  WPVRRSSAKMVREMIRWVVRSHLTQY 88
            P   S+   +  ++R+V RSHLT Y
Sbjct: 165 GPATSSAVMRLNLVMRFVRRSHLTMY 190

[Close]
BLAST of MELO.jh016232.1 vs. NCBI nr
Match: KAF4370740.1 (hypothetical protein F8388_025119 [Cannabis sativa])

HSP 1 Score: 50.1 bits (118), Expect = 3.73e-05
Identity = 26/48 (54.17%), Postives = 28/48 (58.33%), Query Frame = 0 

Query: 8  LKESGISPERPFQLRSRNLRLWSLAMVGWMGPVRFGSLWSIRVCRNGR 55
          LK+SG  P R FQ   RNLR  SLAM G MGPVR   LW  R   + R
Sbjct: 28 LKKSGTEPVRLFQFNLRNLRFLSLAMAGGMGPVRLTCLWRSRFSSSER 75

[Close]
BLAST of MELO.jh016232.1 vs. ExPASy TrEMBL
Match: A0A2K3M624 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g042324 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.70e-23
Identity = 53/98 (54.08%), Postives = 64/98 (65.31%), Query Frame = 0 

Query: 6   RVLKESGISPERPFQLRSRNLRLWSLAMVGWMGPVRFGSLWSIRVCRNGRSPTSGGIWPV 65
           R +++ G  P++   L  R+LRL SLA+ GW GPV FGSLW+ RV R G  PT GGIW  
Sbjct: 36  REMRKEGTEPDKLVLLIRRDLRLVSLAIAGWSGPVSFGSLWNSRVSRYGSWPTEGGIWAE 95

Query: 66  RRSSA--KMVREMIRWVVRSHLTQYQWQQSVCGSQEVR 101
           +   A  K+VREMIR V+RSH   YQ QQSV GS E R
Sbjct: 96  KFEGAESKIVREMIRCVLRSHSIVYQSQQSVFGSHEAR 133

[Close]
BLAST of MELO.jh016232.1 vs. ExPASy TrEMBL
Match: A0A4D9B6D6 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_010124 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.99e-09
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 0 

Query: 3   RFFRVLKESGISPERPFQLRSRNLRLWSLAMVGWMGPVRFGSLWSIRVCRNGRSPTSGGI 62
           RF   L++ G+ PE   Q+  R  RL S  M   +  +R GSLW +R  R GRSP + G+
Sbjct: 64  RFLSWLRKGGMGPETLVQVMVRLWRLVSFVMPRGIESMRLGSLWKVRDVRWGRSPMASGM 123

Query: 63  WPVRRSSAKMVREMIRWVVRSHLTQY 88
            P   S+   +  ++R+V RSHLT Y
Sbjct: 124 GPATSSAVMRLNLVMRFVRRSHLTMY 149

[Close]
BLAST of MELO.jh016232.1 vs. ExPASy TrEMBL
Match: A0A7J6FLW6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_025119 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.81e-05
Identity = 26/48 (54.17%), Postives = 28/48 (58.33%), Query Frame = 0 

Query: 8  LKESGISPERPFQLRSRNLRLWSLAMVGWMGPVRFGSLWSIRVCRNGR 55
          LK+SG  P R FQ   RNLR  SLAM G MGPVR   LW  R   + R
Sbjct: 28 LKKSGTEPVRLFQFNLRNLRFLSLAMAGGMGPVRLTCLWRSRFSSSER 75

The following BLAST results are available for this feature:
BLAST of MELO.jh016232.1 vs. NCBI nr
Match NameE-valueIdentityDescription
PNX86247.15.57e-2354.08hypothetical protein L195_g042324 [Trifolium pratense][more]
KAG6423138.18.16e-0939.53hypothetical protein SASPL_113524 [Salvia splendens][more]
KAF4370740.13.73e-0554.17hypothetical protein F8388_025119 [Cannabis sativa][more]
BLAST of MELO.jh016232.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh016232.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2K3M6242.70e-2354.08Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g042324 PE=4 SV=1[more]
A0A4D9B6D61.99e-0939.53Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_010124 PE=4 SV=1[more]
A0A7J6FLW61.81e-0554.17Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_025119 PE=4 SV=1[more]
BLAST of MELO.jh016232.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh016232.1.t1MELO.jh016232.1.t1mRNA