MELO.jh015971.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh015971.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr07: 20652384 .. 20653079 (-)
RNA-Seq Expression	MELO.jh015971.1
Synteny	MELO.jh015971.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATAGGAGTTTCGATTCAGCAATTTGATATGAATGTGACTCAAGAATACATTTGGTATAATAATATTACGAGGCTCTACATCACTCGACTAGGAGCAGCCGTGGGTAATCTAGTACATATTTAAGTATTGTATAATTACTTAAATTATTTATTCAATTAAATATTTCTAACTTTTTTACAATTTACAGAGATCGAACAATGCAAGACTTCGTGATGTAGCAGATGATCCACAATAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGAAGGAGATACATAATATGTACGATCTACCTATTGTACCTCAACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAATTTACCATAATGTGGAAGAAGTGTCTCCTACGACACAAACACAAAGCCAAACTGGTTATGGTAGTCCGATGACAATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGATACAGGATATTATGATGTAGGGGTCGGTTCATCGTCTTCATATATGAATGTTGGTTCATCAGCTTCTTACATGCATGGACACGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGATAAGAGTACTAACAAGAACCAAAGAACCAAGAGGATCGAGAACAACATAGAGTTTAGAGTCG

mRNA sequence

ATGGCAATAGGAGTTTCGATTCAGCAATTTGATATGAATGTGACTCAAGAATACATTTGGTATAATAATATTACGAGGCTCTACATCACTCGACTAGGAGCAGCCGTGGGTAATCTAAGATCGAACAATGCAAGACTTCGTGATGTAGCAGATGATCCACAATAAGTCCTTGATATATGTAATAATAATGAGAGGTACATGAAGGAGATACATAATATGTACGATCTACCTATTGTACCTCAACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAATTTACCATAATGTGGAAGAAGTGTCTCCTACGACACAAACACAAAGCCAAACTGGTTATGGTAGTCCGATGACAATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGATACAGGATATTATGATGTAGGGGTCGGTTCATCGTCTTCATATATGAATGTTGGTTCATCAGCTTCTTACATGCATGGACACGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGATAAGAGTACTAACAAGAACCAAAGAACCAAGAGGATCGAGAACAACATAGAGTTTAGAGTCG

Coding sequence (CDS)

ATGAAGGAGATACATAATATGTACGATCTACCTATTGTACCTCAACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAGCTGAACTCGATGAAATTTACCATAATGTGGAAGAAGTGTCTCCTACGACACAAACACAAAGCCAAACTGGTTATGGTAGTCCGATGACAATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGGTCGATACAGGATATTATGATGTAGGGGTCGGTTCATCGTCTTCATATATGAATGTTGGTTCATCAGCTTCTTACATGCATGGACACGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTGCAGATGTATCAGATCGATAA

Protein sequence

MKEIHNMYDLPIVPQPVHRGRVRVEEAELDEIYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR

Homology

[Close]

BLAST of MELO.jh015971.1 vs. NCBI nr
Match: KAA0062992.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 235 bits (599), Expect = 6.74e-78
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 7   MYDLPIVPQPVHRGRVRVEEAELDEIYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC 66
           MYDLPIVPQPVHRGRVRVEEAELDE+YHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC
Sbjct: 1   MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC 60

Query: 67  DSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR 120
           DSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR
Sbjct: 61  DSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR 114

[Close]

BLAST of MELO.jh015971.1 vs. NCBI nr
Match: KAA0061327.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 233 bits (594), Expect = 3.90e-77
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 7   MYDLPIVPQPVHRGRVRVEEAELDEIYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC 66
           MYDLPIVPQPVHRGRVRVEEAELDE+YHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC
Sbjct: 1   MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC 60

Query: 67  DSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR 120
           DSEVDTGYYDVGVGSSSSYMNVG SASYMHGHGRGYGEHNEYLYHEAPADVSDR
Sbjct: 61  DSEVDTGYYDVGVGSSSSYMNVGPSASYMHGHGRGYGEHNEYLYHEAPADVSDR 114

[Close]

BLAST of MELO.jh015971.1 vs. NCBI nr
Match: TYK16354.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 225 bits (574), Expect = 4.39e-74
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 7   MYDLPIVPQPVHRGRVRVEEAELDEIYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC 66
           MYDLPIVPQPVHRGRVRVEEAELDE+YHNVEEV PTTQTQSQTGYG PMTMMPTFGAGYC
Sbjct: 1   MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGRPMTMMPTFGAGYC 60

Query: 67  DSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR 120
           DSEVDTGYYDVGVGSSSSYMNVG SASYMHGHGRGYGEHNEYLYHEA ADVSDR
Sbjct: 61  DSEVDTGYYDVGVGSSSSYMNVGPSASYMHGHGRGYGEHNEYLYHEALADVSDR 114

[Close]

BLAST of MELO.jh015971.1 vs. NCBI nr
Match: KAA0049532.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK16210.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (531), Expect = 5.32e-67
Identity = 100/114 (87.72%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 7   MYDLPIVPQPVHRGRVRVEEAELDEIYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC 66
           MYDLPIVP  VHRGRVRVEE ELDE+YHNVEEV PTTQTQSQTGYGSPM MMPTFGAGYC
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 67  DSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR 120
           DSEV TGYYD G+G  SSYM+VG S SYMHGHGRGYGEHNEYLYHEAPADVSDR
Sbjct: 61  DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDR 114

[Close]

BLAST of MELO.jh015971.1 vs. NCBI nr
Match: KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (531), Expect = 5.32e-66
Identity = 101/120 (84.17%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MKEIHNMYDLPIVPQPVHRGRVRVEEAELDEIYHNVEEVSPTTQTQSQTGYGSPMTMMPT 60
           M+EIHNMYDLPIVP PVHRG VRVEEAELD++YHNVEEV  TTQTQSQTGYGSPMTMMPT
Sbjct: 66  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125

Query: 61  FGAGYCDSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR 120
           F AGYCD EV  GYYD GVG SSSY++V  S SYMHGH RGYGEHNEYLYHEAPADVSDR
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185

[Close]

BLAST of MELO.jh015971.1 vs. ExPASy TrEMBL
Match: A0A5A7V422 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00920 PE=4 SV=1)

HSP 1 Score: 235 bits (599), Expect = 3.26e-78
Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 7   MYDLPIVPQPVHRGRVRVEEAELDEIYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC 66
           MYDLPIVPQPVHRGRVRVEEAELDE+YHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC
Sbjct: 1   MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC 60

Query: 67  DSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR 120
           DSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR
Sbjct: 61  DSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR 114

[Close]

BLAST of MELO.jh015971.1 vs. ExPASy TrEMBL
Match: A0A5A7V379 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29891G00010 PE=4 SV=1)

HSP 1 Score: 233 bits (594), Expect = 1.89e-77
Identity = 112/114 (98.25%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 7   MYDLPIVPQPVHRGRVRVEEAELDEIYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC 66
           MYDLPIVPQPVHRGRVRVEEAELDE+YHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC
Sbjct: 1   MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC 60

Query: 67  DSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR 120
           DSEVDTGYYDVGVGSSSSYMNVG SASYMHGHGRGYGEHNEYLYHEAPADVSDR
Sbjct: 61  DSEVDTGYYDVGVGSSSSYMNVGPSASYMHGHGRGYGEHNEYLYHEAPADVSDR 114

[Close]

BLAST of MELO.jh015971.1 vs. ExPASy TrEMBL
Match: A0A5D3CZG9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001380 PE=4 SV=1)

HSP 1 Score: 225 bits (574), Expect = 2.13e-74
Identity = 109/114 (95.61%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 7   MYDLPIVPQPVHRGRVRVEEAELDEIYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC 66
           MYDLPIVPQPVHRGRVRVEEAELDE+YHNVEEV PTTQTQSQTGYG PMTMMPTFGAGYC
Sbjct: 1   MYDLPIVPQPVHRGRVRVEEAELDEVYHNVEEVPPTTQTQSQTGYGRPMTMMPTFGAGYC 60

Query: 67  DSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR 120
           DSEVDTGYYDVGVGSSSSYMNVG SASYMHGHGRGYGEHNEYLYHEA ADVSDR
Sbjct: 61  DSEVDTGYYDVGVGSSSSYMNVGPSASYMHGHGRGYGEHNEYLYHEALADVSDR 114

[Close]

BLAST of MELO.jh015971.1 vs. ExPASy TrEMBL
Match: A0A5D3CXX3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold209G001390 PE=4 SV=1)

HSP 1 Score: 209 bits (531), Expect = 2.58e-67
Identity = 100/114 (87.72%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 7   MYDLPIVPQPVHRGRVRVEEAELDEIYHNVEEVSPTTQTQSQTGYGSPMTMMPTFGAGYC 66
           MYDLPIVP  VHRGRVRVEE ELDE+YHNVEEV PTTQTQSQTGYGSPM MMPTFGAGYC
Sbjct: 1   MYDLPIVPPRVHRGRVRVEEVELDEVYHNVEEVPPTTQTQSQTGYGSPMMMMPTFGAGYC 60

Query: 67  DSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR 120
           DSEV TGYYD G+G  SSYM+VG S SYMHGHGRGYGEHNEYLYHEAPADVSDR
Sbjct: 61  DSEVSTGYYDAGIGPLSSYMDVGPSNSYMHGHGRGYGEHNEYLYHEAPADVSDR 114

[Close]

BLAST of MELO.jh015971.1 vs. ExPASy TrEMBL
Match: A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)

HSP 1 Score: 209 bits (531), Expect = 2.58e-66
Identity = 101/120 (84.17%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MKEIHNMYDLPIVPQPVHRGRVRVEEAELDEIYHNVEEVSPTTQTQSQTGYGSPMTMMPT 60
           M+EIHNMYDLPIVP PVHRG VRVEEAELD++YHNVEEV  TTQTQSQTGYGSPMTMMPT
Sbjct: 66  MEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVYHNVEEVPSTTQTQSQTGYGSPMTMMPT 125

Query: 61  FGAGYCDSEVDTGYYDVGVGSSSSYMNVGSSASYMHGHGRGYGEHNEYLYHEAPADVSDR 120
           F AGYCD EV  GYYD GVG SSSY++V  S SYMHGH RGYGEHNEYLYHEAPADVSDR
Sbjct: 126 FEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTSYMHGHSRGYGEHNEYLYHEAPADVSDR 185

The following BLAST results are available for this feature:

BLAST of MELO.jh015971.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062992.1	6.74e-78	99.12	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0061327.1	3.90e-77	98.25	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
TYK16354.1	4.39e-74	95.61	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0049532.1	5.32e-67	87.72	GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var....	[more]
KAA0062642.1	5.32e-66	84.17	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of MELO.jh015971.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh015971.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V422	3.26e-78	99.12	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V379	1.89e-77	98.25	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3CZG9	2.13e-74	95.61	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5D3CXX3	2.58e-67	87.72	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va...	[more]
A0A5A7V342	2.58e-66	84.17	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of MELO.jh015971.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh015971.1.t1	MELO.jh015971.1.t1	mRNA