MELO.jh015929.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh015929.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTranscription factor bHLH36
Locationchr07: 20184714 .. 20185023 (-)
RNA-Seq ExpressionMELO.jh015929.1
SyntenyMELO.jh015929.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAAGGCGTTATTGAGTTAGCTAGGGAGAGAAAGGGAGAGACAAAAAGAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGAACTGTGCACGGGGAAATAGATAAATGGAGGGAGAAGAAACGAAAAATAAAGATCAAGAACTCACAAGCGATGCAATGAGTCTCCTCGCCGTGGGTCTCTGTCGCCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCGTCATGCGTCATTCGTCGTTCGTGA

mRNA sequence

ATGAACAAAGGCGTTATTGAGTTAGCTAGGGAGAGAAAGGGAGAGACAAAAAGAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGAACTGTGCACGGGGAAATAGATAAATGGAGGGAGAAGAAACGAAAAATAAAGATCAAGAACTCACAAGCGATGCAATGAGTCTCCTCGCCGTGGGTCTCTGTCGCCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCGTCATGCGTCATTCGTCGTTCGTGA

Coding sequence (CDS)

ATGAACAAAGGCGTTATTGAGTTAGCTAGGGAGAGAAAGGGAGAGACAAAAAGAAGACAAGAAATCGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGAACTGTGCACGGGGAAATAGATAAATGGAGGGAGAAGAAACGAAAAATAAAGATCAAGAACTCACAAGCGATGCAATGA

Protein sequence

MNKGVIELARERKGETKRRQEIGALYMSLRTLLPLEFIKVICGTVHGEIDKWREKKRKIKIKNSQAMQ
Homology
BLAST of MELO.jh015929.1 vs. NCBI nr
Match: TYK30150.1 (transcription factor bHLH36 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.59e-20
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 1  MNKGVIELARERKGETKRRQEIGALYMSLRTLLPLEFIKVICGTVHGEIDKWREKKRKIK 60
          M+KG++EL RER  E +RRQEIGALYMSLRTLLPLEFIKVI GT+H   DKWREKKRK K
Sbjct: 1  MDKGIVELGRER--ERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKK 58

BLAST of MELO.jh015929.1 vs. NCBI nr
Match: KAA0065871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 1.07e-17
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 1  MNKGVIELARERKGETKRRQEIGALYMSLRTLLPLEFIKVICGTVHGEIDKWREKKRKIK 60
          M+KGV++L RER  E +RRQEIGALYM++RTLL LEFIKVICG VH E DKWREKKRK K
Sbjct: 1  MDKGVVKLERER--ERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKKK 58

BLAST of MELO.jh015929.1 vs. NCBI nr
Match: KAA0033316.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 6.58e-17
Identity = 44/60 (73.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 1  MNKGVIELARERKGETKRRQEIGALYMSLRTLLPLEFIKVICGTVHGEIDKWREKKRKIK 60
          M+K V+EL RER  E +RRQEI ALYM LR LLPLEFIKVICGTVH   DK REKKRK K
Sbjct: 1  MDKDVVELGRER--ERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKKRKKK 58

BLAST of MELO.jh015929.1 vs. NCBI nr
Match: KAA0044825.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 4.31e-10
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 1  MNKGVIELARERKGETKRRQEIGALYMSLRTLLPLEFIKVICGTVHGEID 50
          M+KGV+EL RER  E +RRQEI ALYMSLRTLLPLEFIKV      G  D
Sbjct: 6  MDKGVVELGRER--ERQRRQEISALYMSLRTLLPLEFIKVSVAKKKGRGD 53

BLAST of MELO.jh015929.1 vs. NCBI nr
Match: XP_022967981.1 (transcription factor bHLH118-like [Cucurbita maxima])

HSP 1 Score: 52.4 bits (124), Expect = 7.77e-06
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 12  RKGETKRRQEIGALYMSLRTLLPLEFIK---VICGTVHGEIDKWREKKRKIK 60
           R+ E +RRQE+GALYMSLRTLLPLEFIK    I   ++G ++  + +K+KIK
Sbjct: 79  RERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGAVNYIKYQKKKIK 130

BLAST of MELO.jh015929.1 vs. ExPASy TrEMBL
Match: A0A5D3E3K5 (Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001340 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.72e-21
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 1  MNKGVIELARERKGETKRRQEIGALYMSLRTLLPLEFIKVICGTVHGEIDKWREKKRKIK 60
          M+KG++EL RER  E +RRQEIGALYMSLRTLLPLEFIKVI GT+H   DKWREKKRK K
Sbjct: 1  MDKGIVELGRER--ERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKK 58

BLAST of MELO.jh015929.1 vs. ExPASy TrEMBL
Match: A0A5A7VJK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00020 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.19e-18
Identity = 45/60 (75.00%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 1  MNKGVIELARERKGETKRRQEIGALYMSLRTLLPLEFIKVICGTVHGEIDKWREKKRKIK 60
          M+KGV++L RER  E +RRQEIGALYM++RTLL LEFIKVICG VH E DKWREKKRK K
Sbjct: 1  MDKGVVKLERER--ERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKKK 58

BLAST of MELO.jh015929.1 vs. ExPASy TrEMBL
Match: A0A5A7STJ5 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00940 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.18e-17
Identity = 44/60 (73.33%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 1  MNKGVIELARERKGETKRRQEIGALYMSLRTLLPLEFIKVICGTVHGEIDKWREKKRKIK 60
          M+K V+EL RER  E +RRQEI ALYM LR LLPLEFIKVICGTVH   DK REKKRK K
Sbjct: 1  MDKDVVELGRER--ERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKKRKKK 58

BLAST of MELO.jh015929.1 vs. ExPASy TrEMBL
Match: A0A5A7TTV0 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004670 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.09e-10
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 0

Query: 1  MNKGVIELARERKGETKRRQEIGALYMSLRTLLPLEFIKVICGTVHGEID 50
          M+KGV+EL RER  E +RRQEI ALYMSLRTLLPLEFIKV      G  D
Sbjct: 6  MDKGVVELGRER--ERQRRQEISALYMSLRTLLPLEFIKVSVAKKKGRGD 53

BLAST of MELO.jh015929.1 vs. ExPASy TrEMBL
Match: A0A6J1HTL2 (transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111467355 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.76e-06
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0

Query: 12  RKGETKRRQEIGALYMSLRTLLPLEFIK---VICGTVHGEIDKWREKKRKIK 60
           R+ E +RRQE+GALYMSLRTLLPLEFIK    I   ++G ++  + +K+KIK
Sbjct: 79  RERERQRRQEMGALYMSLRTLLPLEFIKGKRAISDQMNGAVNYIKYQKKKIK 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK30150.11.59e-2076.67transcription factor bHLH36 [Cucumis melo var. makuwa][more]
KAA0065871.11.07e-1775.00retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon p... [more]
KAA0033316.16.58e-1773.33transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcri... [more]
KAA0044825.14.31e-1068.00transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcri... [more]
XP_022967981.17.77e-0655.77transcription factor bHLH118-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E3K57.72e-2176.67Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7VJK95.19e-1875.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7STJ53.18e-1773.33Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7TTV02.09e-1068.00Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A6J1HTL23.76e-0655.77transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111467355 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh015929.1.t1MELO.jh015929.1.t1mRNA