MELO.jh015159.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh015159.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr07: 4428507 .. 4429708 (-)
RNA-Seq ExpressionMELO.jh015159.1
SyntenyMELO.jh015159.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTGAAATGGATTTTACGGATATTAAATTAGAAAATTAGTTCAAATTCAAAATGAAAAAGAAAACACGGATCCTCAAACAACTTCCACAGCTGGGAGATTGAGGTCAAAATCCAACGGCCGGGATTTTCGCGTAGTGTCGAAATCAACTACAGATGACGAATCGGAGTCGCTTGCACCGGCGGCGGCGGCGGTAACGGTACGACGAAAGTCACTGATCTTCTCCGCCTGAGCAAACGCATCGAAGAAGAAAATTGGACGGGAAATGCCTGGCGCGTGGATGCCTCCGTCGAGGTAAGGATTCGACGGCGTTGGCGATGGGGAAGAGGACTCGACGGTGCTGCTGTGGCTGGGACTACTACTGCAAGCGGATTTATGGAAGTTGGTGTGGTTGTTATCAACGATTAGGAAATGGTTTTGAACAGGGAAATTAGTTTTGGCATTTGCGCCTCTGAATTCACGCGCAGCCGTGTCGTAAGCACGCGCCGCTTCTTCCGCAGTATTGAATGTGCCAAGCCAAACCCTAGTCTTCTTACGTGGGTCCCGGATTTCGGCAGCGTAGCGACCCCACGGCCTCTTTCTGACGCCTCTGTAGCGGGTCTCTTTGGAATTGGGCGGCGCGGCGGATGTCGACCGGTCTCCGGCAGCCATATTGTGAAAAGAAGCGGTGGAGAGAGAGAGTTAGGTGTTATAGTGAGAGAGAAATTGATGTGAACTGAAATTTGAGGGGAAAAGGAGGGGAGGGGGAGGTTATATAGGAAGAAAGGGAGAAGTTTTCAATTTTAATTATTTTGTTTTTTTTTTTTAAAAAAAAAAAAAAAGGGGTAAATTTGGAGCGTAAATTTGGGGAGCGTATAAATCACGGACAGCGCACGTGGGCGATGGAGGGTTTGGGAAAAAGAGAAAAAGAAAGGAAGGAGAGGCGTGGGTGAGCTGATGAATATATTTCAAAGCTCAGTCAACGACGCTTTTGACCGTTTTATTTCTTTTAAAAACCTCAGCCGCCGCGCCGTTTCCTCCACACGCGTGGGCCCCCACCTGGCGCGTTAAATAATTTCAGTAACACATAATTTTGTAATATCTTTTATTTTGCACAATCATAAAAATTGTACAAAATATGTACCTAAACTTTTTAAATTAAAAAAAAAAAAATTGTCCTTAAAACTTTAAAAATTCATTCAAATATATTCATATCCTTCCTTC

mRNA sequence

CCTTGAAATGGATTTTACGGATATTAAATTAGAAAATTAGTTCAAATTCAAAATGAAAAAGAAAACACGGATCCTCAAACAACTTCCACAGCTGGGAGATTGAGGTCAAAATCCAACGGCCGGGATTTTCGCGTAGTGTCGAAATCAACTACAGATGACGAATCGGAGTCGCTTGCACCGGCGGCGGCGGCGGTAACGGTACGACGAAAGTCACTGATCTTCTCCGCCTGAGCAAACGCATCGAAGAAGAAAATTGGACGGGAAATGCCTGGCGCGTGGATGCCTCCGTCGAGGTAAGGATTCGACGGCGTTGGCGATGGGGAAGAGGACTCGACGGTGCTGCTGTGGCTGGGACTACTACTGCAAGCGGATTTATGGAAGTTGGTGTGGTTGTTATCAACGATTAGGAAATGGTTTTGAACAGGGAAATTAGTTTTGGCATTTGCGCCTCTGAATTCACGCGCAGCCGTGTCGTAAGCACGCGCCGCTTCTTCCGCAGTATTGAATGTGCCAAGCCAAACCCTAGTCTTCTTACGTGGGTCCCGGATTTCGGCAGCGTAGCGACCCCACGGCCTCTTTCTGACGCCTCTGTAGCGGGTCTCTTTGGAATTGGGCGGCGCGGCGGATGTCGACCGGTCTCCGGCAGCCATATTGTGAAAAGAAGCGGTGGAGAGAGAGAGTTAGGTGTTATAGTGAGAGAGAAATTGATGTGAACTGAAATTTGAGGGGAAAAGGAGGGGAGGGGGAGGTTATATAGGAAGAAAGGGAGAAGTTTTCAATTTTAATTATTTTGTTTTTTTTTTTTAAAAAAAAAAAAAAAGGGGTAAATTTGGAGCGTAAATTTGGGGAGCGTATAAATCACGGACAGCGCACGTGGGCGATGGAGGGTTTGGGAAAAAGAGAAAAAGAAAGGAAGGAGAGGCGTGGGTGAGCTGATGAATATATTTCAAAGCTCAGTCAACGACGCTTTTGACCGTTTTATTTCTTTTAAAAACCTCAGCCGCCGCGCCGTTTCCTCCACACGCGTGGGCCCCCACCTGGCGCGTTAAATAATTTCAGTAACACATAATTTTGTAATATCTTTTATTTTGCACAATCATAAAAATTGTACAAAATATGTACCTAAACTTTTTAAATTAAAAAAAAAAAAATTGTCCTTAAAACTTTAAAAATTCATTCAAATATATTCATATCCTTCCTTC

Coding sequence (CDS)

ATGGTTTTGAACAGGGAAATTAGTTTTGGCATTTGCGCCTCTGAATTCACGCGCAGCCGTGTCGTAAGCACGCGCCGCTTCTTCCGCAGTATTGAATGTGCCAAGCCAAACCCTAGTCTTCTTACGTGGGTCCCGGATTTCGGCAGCGTAGCGACCCCACGGCCTCTTTCTGACGCCTCTGTAGCGGGTCTCTTTGGAATTGGGCGGCGCGGCGGATGTCGACCGGTCTCCGGCAGCCATATTGTGAAAAGAAGCGGTGGAGAGAGAGAGTTAGGTGTTATAGTGAGAGAGAAATTGATGTGA

Protein sequence

MVLNREISFGICASEFTRSRVVSTRRFFRSIECAKPNPSLLTWVPDFGSVATPRPLSDASVAGLFGIGRRGGCRPVSGSHIVKRSGGERELGVIVREKLM
Homology
[Close]
BLAST of MELO.jh015159.1 vs. NCBI nr
Match: PON37874.1 (hypothetical protein PanWU01x14_316950 [Parasponia andersonii])

HSP 1 Score: 55.1 bits (131), Expect = 3.65e-06
Identity = 31/80 (38.75%), Postives = 41/80 (51.25%), Query Frame = 0 

Query: 6   EISFGICASEFTRSRVVSTRRFFRSIECAKPNPSLLTWVPDFGSVATPRPLSDASVAGLF 65
           E+  G+ A+E +   VV    FF  +E  +P+P+LL WVPD G V  PRPL  +    L 
Sbjct: 259 EVGLGLGAAEVSGGSVVGAGGFFGGVEGPEPDPALLAWVPDLGGVPAPRPLPHSPEMHLL 318

Query: 66  GI-----GRRGGCRPVSGSH 80
            +     G  G CR VS  H
Sbjct: 319 HVAVNFNGGGGCCRLVSRRH 338

[Close]
BLAST of MELO.jh015159.1 vs. NCBI nr
Match: ESQ34018.1 (hypothetical protein EUTSA_v10009072mg [Eutrema salsugineum])

HSP 1 Score: 52.0 bits (123), Expect = 1.00e-05
Identity = 34/77 (44.16%), Postives = 40/77 (51.95%), Query Frame = 0 

Query: 6  EISFGICASEFTRSRVVSTRRFFRSIECAKPNPSLLTWVPDFGSVATPRPLSDASVAGLF 65
          EI FG  A+E     VV T R F S+E A+P+ SLL  + D G V TP PLS +SV   F
Sbjct: 3  EIGFGFSATEPKSGFVVGTSRRFWSVESAEPDSSLLRRISDLGGVTTPWPLSYSSVTVFF 62

Query: 66 GI--------GRRGGCR 74
                    GRR  CR
Sbjct: 63 DSAVSAVSFNGRRFNCR 79

[Close]
BLAST of MELO.jh015159.1 vs. NCBI nr
Match: GER43169.1 (small and basic intrinsic protein 2 [Striga asiatica])

HSP 1 Score: 49.7 bits (117), Expect = 2.49e-04
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 0 

Query: 6   EISFGICASEFTRSRVVSTRRFFRSIECAKPNPSLLTWVPDFGSVATPRPLSDASVAGLF 65
           E+  G+ A+E T   VV TRR    +E A+P  +LL  V D G VA PRPL  A+VA L 
Sbjct: 168 EVGLGLGAAEPTCGGVVRTRRLLGGVEGAEPYAALLPRVADLGGVAPPRPLPYAAVADLL 227

[Close]
BLAST of MELO.jh015159.1 vs. NCBI nr
Match: PON91894.1 (hypothetical protein TorRG33x02_122250 [Trema orientale])

HSP 1 Score: 48.1 bits (113), Expect = 7.10e-04
Identity = 25/60 (41.67%), Postives = 33/60 (55.00%), Query Frame = 0 

Query: 6   EISFGICASEFTRSRVVSTRRFFRSIECAKPNPSLLTWVPDFGSVATPRPLSDASVAGLF 65
           E+  G+ ++E    RVV TRR F  +E A+P+P LL  V D G  + PR L  A V  L 
Sbjct: 103 EVGLGLGSAEGASRRVVGTRRVFSGVEGAEPDPGLLPGVSDLGRESPPRSLPHAPVPDLL 162

[Close]
BLAST of MELO.jh015159.1 vs. ExPASy TrEMBL
Match: A0A2P5AMW1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_316950 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.77e-06
Identity = 31/80 (38.75%), Postives = 41/80 (51.25%), Query Frame = 0 

Query: 6   EISFGICASEFTRSRVVSTRRFFRSIECAKPNPSLLTWVPDFGSVATPRPLSDASVAGLF 65
           E+  G+ A+E +   VV    FF  +E  +P+P+LL WVPD G V  PRPL  +    L 
Sbjct: 259 EVGLGLGAAEVSGGSVVGAGGFFGGVEGPEPDPALLAWVPDLGGVPAPRPLPHSPEMHLL 318

Query: 66  GI-----GRRGGCRPVSGSH 80
            +     G  G CR VS  H
Sbjct: 319 HVAVNFNGGGGCCRLVSRRH 338

[Close]
BLAST of MELO.jh015159.1 vs. ExPASy TrEMBL
Match: V4L2R2 (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009072mg PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.84e-06
Identity = 34/77 (44.16%), Postives = 40/77 (51.95%), Query Frame = 0 

Query: 6  EISFGICASEFTRSRVVSTRRFFRSIECAKPNPSLLTWVPDFGSVATPRPLSDASVAGLF 65
          EI FG  A+E     VV T R F S+E A+P+ SLL  + D G V TP PLS +SV   F
Sbjct: 3  EIGFGFSATEPKSGFVVGTSRRFWSVESAEPDSSLLRRISDLGGVTTPWPLSYSSVTVFF 62

Query: 66 GI--------GRRGGCR 74
                    GRR  CR
Sbjct: 63 DSAVSAVSFNGRRFNCR 79

[Close]
BLAST of MELO.jh015159.1 vs. ExPASy TrEMBL
Match: A0A5A7QD25 (Small and basic intrinsic protein 2 OS=Striga asiatica OX=4170 GN=STAS_20011 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.20e-04
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 0 

Query: 6   EISFGICASEFTRSRVVSTRRFFRSIECAKPNPSLLTWVPDFGSVATPRPLSDASVAGLF 65
           E+  G+ A+E T   VV TRR    +E A+P  +LL  V D G VA PRPL  A+VA L 
Sbjct: 168 EVGLGLGAAEPTCGGVVRTRRLLGGVEGAEPYAALLPRVADLGGVAPPRPLPYAAVADLL 227

[Close]
BLAST of MELO.jh015159.1 vs. ExPASy TrEMBL
Match: A0A2P5F275 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_122250 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.44e-04
Identity = 25/60 (41.67%), Postives = 33/60 (55.00%), Query Frame = 0 

Query: 6   EISFGICASEFTRSRVVSTRRFFRSIECAKPNPSLLTWVPDFGSVATPRPLSDASVAGLF 65
           E+  G+ ++E    RVV TRR F  +E A+P+P LL  V D G  + PR L  A V  L 
Sbjct: 103 EVGLGLGSAEGASRRVVGTRRVFSGVEGAEPDPGLLPGVSDLGRESPPRSLPHAPVPDLL 162

The following BLAST results are available for this feature:
BLAST of MELO.jh015159.1 vs. NCBI nr
Match NameE-valueIdentityDescription
PON37874.13.65e-0638.75hypothetical protein PanWU01x14_316950 [Parasponia andersonii][more]
ESQ34018.11.00e-0544.16hypothetical protein EUTSA_v10009072mg [Eutrema salsugineum][more]
GER43169.12.49e-0446.67small and basic intrinsic protein 2 [Striga asiatica][more]
PON91894.17.10e-0441.67hypothetical protein TorRG33x02_122250 [Trema orientale][more]
BLAST of MELO.jh015159.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh015159.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5AMW11.77e-0638.75Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_316950 PE... [more]
V4L2R24.84e-0644.16Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009072mg PE=... [more]
A0A5A7QD251.20e-0446.67Small and basic intrinsic protein 2 OS=Striga asiatica OX=4170 GN=STAS_20011 PE=... [more]
A0A2P5F2753.44e-0441.67Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_122250 PE=4 SV... [more]
BLAST of MELO.jh015159.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh015159.1.t1MELO.jh015159.1.t1mRNA