MELO.jh015131.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh015131.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCLAVATA3/ESR-RELATED 4
Locationchr07: 4049950 .. 4050528 (-)
RNA-Seq ExpressionMELO.jh015131.1
SyntenyMELO.jh015131.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGAAAGAGAGGAAAAAAAGAAACAACCCTAAAAACAGAAGCGTGTGTTGTGAAGTTGAATGGCTAACTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATATTGCTCTTGTGTTCTTCCATTTCCGAAAGTCGTTTACTTTCGTCTCCGTCTCCGTCTTCGTCCTCGTCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGTGGAAGAAATGTTGAAGTTTATCATCGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGGGGACCTGATCCACGCCATCATTGAATCATACATTTCTTTTTTCTTCTTTTTTTTGCTTTCTTTCATTTTACACTTTCAAGTTCAATGAAATCGTTCGATGAAAGTTGAACTAGAAATGGTAATAGAATGAGTTATGCTCAAATTAACATCGCCGTGTTTGTTTTTGTTTTGTCCTTGAGCTATATTTGAGAGAGAATAAATCTCTTGTGGGTTTTGTAAATCAAAGAGTGAGATGATATATTTCTATATATATAAATATACACCACATCGTTGTTCCCTCTTAA

mRNA sequence

AAAAGAAAGAGAGGAAAAAAAGAAACAACCCTAAAAACAGAAGCGTGTGTTGTGAAGTTGAATGGCTAACTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATATTGCTCTTGTGTTCTTCCATTTCCGAAAGTCGTTTACTTTCGTCTCCGTCTCCGTCTTCGTCCTCGTCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGTGGAAGAAATGTTGAAGTTTATCATCGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGGGGACCTGATCCACGCCATCATTGAATCATACATTTCTTTTTTCTTCTTTTTTTTGCTTTCTTTCATTTTACACTTTCAAGTTCAATGAAATCGTTCGATGAAAGTTGAACTAGAAATGGTAATAGAATGAGTTATGCTCAAATTAACATCGCCGTGTTTGTTTTTGTTTTGTCCTTGAGCTATATTTGAGAGAGAATAAATCTCTTGTGGGTTTTGTAAATCAAAGAGTGAGATGATATATTTCTATATATATAAATATACACCACATCGTTGTTCCCTCTTAA

Coding sequence (CDS)

ATGGCTAACTGTAGTGTAAAGCTGATCTTGTTTTGGGGTTTGGTTTTGATATTGCTCTTGTGTTCTTCCATTTCCGAAAGTCGTTTACTTTCGTCTCCGTCTCCGTCTTCGTCCTCGTCTTCGAATAAGAAAAACGAACTGTTTGTAAAGAATGTGGAAGAAATGTTGAAGTTTATCATCGAAGAGAAAGAGAAGCTTGGAAGGCATTTTGTGTCCAAAAGACTAAGCCCTGGGGGACCTGATCCACGCCATCATTGA

Protein sequence

MANCSVKLILFWGLVLILLLCSSISESRLLSSPSPSSSSSSNKKNELFVKNVEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH
Homology
BLAST of MELO.jh015131.1 vs. NCBI nr
Match: KGN55081.1 (hypothetical protein Csa_012463 [Cucumis sativus])

HSP 1 Score: 145 bits (367), Expect = 1.69e-43
Identity = 82/87 (94.25%), Postives = 82/87 (94.25%), Query Frame = 0

Query: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSPSSS--SSSNKKNELFVKNVEEMLKF 60
          MANCSVKLILFWGLVLILLLCSSISESRLLSSPS S S  SSSNKKNELFVKN EEMLKF
Sbjct: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60

Query: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 85
          IIEEKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 87

BLAST of MELO.jh015131.1 vs. NCBI nr
Match: XP_031267366.1 (CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera])

HSP 1 Score: 52.4 bits (124), Expect = 2.29e-06
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 0

Query: 41  SNKKNELFVKNVEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 85
           SN +  + ++N +EMLK  ++ +E LG+ F SKRLSPGGPDPRHH
Sbjct: 60  SNDEGRVLMENAKEMLKDGVKRQEILGKFFDSKRLSPGGPDPRHH 104

BLAST of MELO.jh015131.1 vs. NCBI nr
Match: KAE9585155.1 (hypothetical protein Lalb_Chr25g0286011 [Lupinus albus])

HSP 1 Score: 51.6 bits (122), Expect = 2.56e-06
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0

Query: 12 WGLVLILLLCSSI---SESRLLSSPSPSSSSSSNKKNELFVKNVEEMLKFIIEEKEKLG- 71
          W ++  +LL +SI    E+R    P PSS S++N+ + +F+++ +++LK II  K+ LG 
Sbjct: 5  WRMLCFILLFTSILICKEAR----PIPSSISNNNENHAIFMESSKQVLKEIIRRKQLLGI 64

Query: 72 RHFVSKRLSPGGPDPRHH 85
           H+ + RLSPGGPDP HH
Sbjct: 65 THYETNRLSPGGPDPHHH 78

BLAST of MELO.jh015131.1 vs. NCBI nr
Match: XP_031265123.1 (CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera])

HSP 1 Score: 50.1 bits (118), Expect = 1.82e-05
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 0

Query: 41  SNKKNELFVKNVEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 85
           SN +  + ++N +EMLK  ++ +E LG+ F SKR+SPGGPDP HH
Sbjct: 60  SNDEGRVLMENAKEMLKDSVKRQEILGKFFDSKRVSPGGPDPHHH 104

BLAST of MELO.jh015131.1 vs. NCBI nr
Match: KAE9617029.1 (hypothetical protein Lalb_Chr03g0031051 [Lupinus albus] >KAF1897280.1 hypothetical protein Lal_00034983 [Lupinus albus])

HSP 1 Score: 48.1 bits (113), Expect = 5.45e-05
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0

Query: 41 SNKKNELFVKNVEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 85
          SN +N  F ++V++MLK I   K+  G ++   RLSPGGPDPRHH
Sbjct: 31 SNNQNHTFERSVKQMLKEITRRKQLQGTNYELHRLSPGGPDPRHH 75

BLAST of MELO.jh015131.1 vs. ExPASy Swiss-Prot
Match: A0A072V9Z0 (CLAVATA3/ESR (CLE)-related protein 33 OS=Medicago truncatula OX=3880 GN=CLE33 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 9.6e-05
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 12 WGLVLILLLCSSISESRLLSSPSPSSSSSSNKKNELFVKNVEEMLKFIIEEKEKLGRHFV 71
          W ++  +LL +SI      + P PSS SSSN  +  FV++V++++K I+  K+ LG  + 
Sbjct: 4  WRMLCFVLLFTSILICH-DARPLPSSLSSSN-GSPAFVESVKQVVKEIMRRKQLLGTQYS 63

Query: 72 SKRLSPGGPDPRHH 86
          + RLSP GPDP HH
Sbjct: 64 TNRLSPSGPDPHHH 75

BLAST of MELO.jh015131.1 vs. ExPASy TrEMBL
Match: A0A0A0L4M1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1)

HSP 1 Score: 145 bits (367), Expect = 8.16e-44
Identity = 82/87 (94.25%), Postives = 82/87 (94.25%), Query Frame = 0

Query: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSPSSS--SSSNKKNELFVKNVEEMLKF 60
          MANCSVKLILFWGLVLILLLCSSISESRLLSSPS S S  SSSNKKNELFVKN EEMLKF
Sbjct: 1  MANCSVKLILFWGLVLILLLCSSISESRLLSSPSQSQSPSSSSNKKNELFVKNAEEMLKF 60

Query: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 85
          IIEEKEKLGRHFVSKRLSPGGPDPRHH
Sbjct: 61 IIEEKEKLGRHFVSKRLSPGGPDPRHH 87

BLAST of MELO.jh015131.1 vs. ExPASy TrEMBL
Match: A0A6A4MZR2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr25g0286011 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.24e-06
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = 0

Query: 12 WGLVLILLLCSSI---SESRLLSSPSPSSSSSSNKKNELFVKNVEEMLKFIIEEKEKLG- 71
          W ++  +LL +SI    E+R    P PSS S++N+ + +F+++ +++LK II  K+ LG 
Sbjct: 5  WRMLCFILLFTSILICKEAR----PIPSSISNNNENHAIFMESSKQVLKEIIRRKQLLGI 64

Query: 72 RHFVSKRLSPGGPDPRHH 85
           H+ + RLSPGGPDP HH
Sbjct: 65 THYETNRLSPGGPDPHHH 78

BLAST of MELO.jh015131.1 vs. ExPASy TrEMBL
Match: A0A6A5PKV4 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034983 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.64e-05
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 0

Query: 41 SNKKNELFVKNVEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 85
          SN +N  F ++V++MLK I   K+  G ++   RLSPGGPDPRHH
Sbjct: 31 SNNQNHTFERSVKQMLKEITRRKQLQGTNYELHRLSPGGPDPRHH 75

BLAST of MELO.jh015131.1 vs. ExPASy TrEMBL
Match: A0A2P5DTM2 (CLAVATA3/ESR (CLE)-related protein OS=Parasponia andersonii OX=3476 GN=PanCLE1 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.74e-05
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 33 PSPSSSSSSNK-KNELFVKNVEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 85
          PSPS  S S+K K+++ ++N + +LK  I  +   GR FV  RLSPGGPDPRHH
Sbjct: 24 PSPSPGSFSDKPKHQILMENAKRVLKDSIARQN--GRRFVPNRLSPGGPDPRHH 75

BLAST of MELO.jh015131.1 vs. ExPASy TrEMBL
Match: A0A0S3SIM4 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G140800 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.74e-05
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = 0

Query: 33 PSPSSSSSSNKKNELFVKNVEEMLKFIIEEKEKLGRHFVSKRLSPGGPDPRHH 85
          P PSS  SSN+ N  F+++   +LK I+  K+ LG  +   RLSPGGPDP HH
Sbjct: 24 PIPSSVESSNQ-NHAFLESANTVLKEIMRRKQLLGTEYKPNRLSPGGPDPHHH 75

BLAST of MELO.jh015131.1 vs. TAIR 10
Match: AT2G31081.1 (CLAVATA3/ESR-RELATED 4 )

HSP 1 Score: 41.2 bits (95), Expect = 4.9e-04
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = 0

Query: 12 WGLVLILLLCSSISESR-LLSSPSPSSSSSSNKKNELFVKNVEEMLKFIIEEKEKLGRHF 71
          W  +++LLL  S+ + R L++  SPS S +  K     +K  EE LK   ++ + +    
Sbjct: 7  WVCLILLLLEFSVHQCRPLVAEESPSDSGNIRKIMRELLKRSEE-LKVRSKDGQTVLGTL 66

Query: 72 VSKRLSPGGPDPRHH 86
           SKRLSPGGPDPRHH
Sbjct: 67 DSKRLSPGGPDPRHH 80

BLAST of MELO.jh015131.1 vs. TAIR 10
Match: AT1G06225.1 (CLAVATA3/ESR-RELATED 3 )

HSP 1 Score: 40.4 bits (93), Expect = 8.3e-04
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 0

Query: 14 LVLILLL-CSSISESRLLSSPSPSSSSSSNKK--NELFVKNVEEMLKFIIEEKEKLGRHF 73
          LVL+L+L  +S+ E R L +    S SS  KK   ELF + ++EM      E+  LG   
Sbjct: 10 LVLLLVLELTSVHECRPLVAEERFSGSSRLKKIRRELF-ERLKEMKGRSEGEETILGNTL 69

Query: 74 VSKRLSPGGPDPRHH 86
           SKRLSPGGPDPRHH
Sbjct: 70 DSKRLSPGGPDPRHH 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN55081.11.69e-4394.25hypothetical protein Csa_012463 [Cucumis sativus][more]
XP_031267366.12.29e-0655.56CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera][more]
KAE9585155.12.56e-0642.31hypothetical protein Lalb_Chr25g0286011 [Lupinus albus][more]
XP_031265123.11.82e-0551.11CLAVATA3/ESR (CLE)-related protein 3-like [Pistacia vera][more]
KAE9617029.15.45e-0551.11hypothetical protein Lalb_Chr03g0031051 [Lupinus albus] >KAF1897280.1 hypothetic... [more]
Match NameE-valueIdentityDescription
A0A072V9Z09.6e-0541.89CLAVATA3/ESR (CLE)-related protein 33 OS=Medicago truncatula OX=3880 GN=CLE33 PE... [more]
Match NameE-valueIdentityDescription
A0A0A0L4M18.16e-4494.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627800 PE=4 SV=1[more]
A0A6A4MZR21.24e-0642.31Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr25g0286011 PE=4 SV=1[more]
A0A6A5PKV42.64e-0551.11Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00034983 PE=4 SV=1[more]
A0A2P5DTM23.74e-0551.85CLAVATA3/ESR (CLE)-related protein OS=Parasponia andersonii OX=3476 GN=PanCLE1 P... [more]
A0A0S3SIM43.74e-0549.06Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.07G... [more]
Match NameE-valueIdentityDescription
AT2G31081.14.9e-0441.33CLAVATA3/ESR-RELATED 4 [more]
AT1G06225.18.3e-0448.00CLAVATA3/ESR-RELATED 3 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh015131.1.t1MELO.jh015131.1.t1mRNA