MELO.jh014089.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh014089.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionmediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr06: 31452469 .. 31452798 (+)
RNA-Seq ExpressionMELO.jh014089.1
SyntenyMELO.jh014089.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGATTAGTTCTCTCATATGTTTCTACATTGGTGAGTGGCATCATCTTGATAGAGTACTTAGACAGTTCGGTATTCAACAAGCTGTTCCACGTGACTGTAATACTGAACCACTGTTGCACAACATTGACCTGAGGACTGCTGATTGGTCAGATAGAGTTGCTCATTTAGTGATGCGATGGCATAATCGCAGAAGGTTTACTACTACGAGACCTCCAATTGAGCAATTTGATATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGAGAGCTGCTATGAGTCATCTGGTATACATTTAA

mRNA sequence

ACGATTAGTTCTCTCATATGTTTCTACATTGGTGAGTGGCATCATCTTGATAGAGTACTTAGACAGTTCGGTATTCAACAAGCTGTTCCACGTGACTGTAATACTGAACCACTGTTGCACAACATTGACCTGAGGACTGCTGATTGGTCAGATAGAGTTGCTCATTTAGTGATGCGATGGCATAATCGCAGAAGGTTTACTACTACGAGACCTCCAATTGAGCAATTTGATATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGAGAGCTGCTATGAGTCATCTGGTATACATTTAA

Coding sequence (CDS)

ATGCGATGGCATAATCGCAGAAGGTTTACTACTACGAGACCTCCAATTGAGCAATTTGATATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGAGAGCTGCTATGAGTCATCTGGTATACATTTAA

Protein sequence

MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHLVYI
Homology
BLAST of MELO.jh014089.1 vs. NCBI nr
Match: KAA0055863.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK24087.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (269), Expect = 6.64e-29
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHL 49
          MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHL
Sbjct: 44 MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHL 92

BLAST of MELO.jh014089.1 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 100 bits (250), Expect = 2.46e-24
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0

Query: 1  MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHL 49
          MRWHNRRRFT T PPIEQFDMDVTQEYIHWYKNISKLYITQP AAMSHL
Sbjct: 1  MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHL 49

BLAST of MELO.jh014089.1 vs. NCBI nr
Match: XP_008463092.1 (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 2.93e-24
Identity = 45/49 (91.84%), Postives = 46/49 (93.88%), Query Frame = 0

Query: 1   MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHL 49
           MRWHNRRRFT T PPIEQFDMDVTQEYI+WYKNISKLYITQP AAMSHL
Sbjct: 92  MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHL 140

BLAST of MELO.jh014089.1 vs. NCBI nr
Match: KAA0039599.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (253), Expect = 8.06e-24
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHLV 50
           MRWHNRRRFT T PPIEQFDMDVTQEYIHWYKNI+KLYITQP AAMSHLV
Sbjct: 222 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNITKLYITQPEAAMSHLV 271

BLAST of MELO.jh014089.1 vs. NCBI nr
Match: KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (250), Expect = 3.49e-23
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0

Query: 1   MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHL 49
           MRWHNRRRFT T PPIEQFDMDVTQEYIHWYKNISKLYITQP AAMSHL
Sbjct: 253 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHL 301

BLAST of MELO.jh014089.1 vs. ExPASy TrEMBL
Match: A0A5D3DKG5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00590 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 3.22e-29
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 0

Query: 1  MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHL 49
          MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHL
Sbjct: 44 MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHL 92

BLAST of MELO.jh014089.1 vs. ExPASy TrEMBL
Match: A0A1S3BLK4 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 1.19e-24
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0

Query: 1  MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHL 49
          MRWHNRRRFT T PPIEQFDMDVTQEYIHWYKNISKLYITQP AAMSHL
Sbjct: 1  MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHL 49

BLAST of MELO.jh014089.1 vs. ExPASy TrEMBL
Match: A0A1S3CIU3 (serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656 GN=LOC103501325 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.42e-24
Identity = 45/49 (91.84%), Postives = 46/49 (93.88%), Query Frame = 0

Query: 1   MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHL 49
           MRWHNRRRFT T PPIEQFDMDVTQEYI+WYKNISKLYITQP AAMSHL
Sbjct: 92  MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHL 140

BLAST of MELO.jh014089.1 vs. ExPASy TrEMBL
Match: A0A5A7TEE9 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00760 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 3.90e-24
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHLV 50
           MRWHNRRRFT T PPIEQFDMDVTQEYIHWYKNI+KLYITQP AAMSHLV
Sbjct: 222 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNITKLYITQPEAAMSHLV 271

BLAST of MELO.jh014089.1 vs. ExPASy TrEMBL
Match: A0A5A7T598 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00500 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 1.69e-23
Identity = 46/49 (93.88%), Postives = 46/49 (93.88%), Query Frame = 0

Query: 1   MRWHNRRRFTTTRPPIEQFDMDVTQEYIHWYKNISKLYITQPRAAMSHL 49
           MRWHNRRRFT T PPIEQFDMDVTQEYIHWYKNISKLYITQP AAMSHL
Sbjct: 253 MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHL 301

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0055863.16.64e-29100.00serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
XP_008449513.12.46e-2493.88PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... [more]
XP_008463092.12.93e-2491.84PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel... [more]
KAA0039599.18.06e-2492.00serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0036767.13.49e-2393.88serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DKG53.22e-29100.00Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A1S3BLK41.19e-2493.88mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A1S3CIU31.42e-2491.84serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656... [more]
A0A5A7TEE93.90e-2492.00Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7T5981.69e-2393.88Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh014089.1.t1MELO.jh014089.1.t1mRNA