MELO.jh013811.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh013811.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	GATA zinc finger domain-containing protein 10-like isoform X2
Location	chr06: 25971036 .. 25971748 (+)
RNA-Seq Expression	MELO.jh013811.1
Synteny	MELO.jh013811.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTGACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTAGGTCATCTGGTACATATTTAAATATTGTATAATTACTTAAATTATTTATTCAATTAAATATTTCTAATTTTTTTTTACAATTTACAAAGATCGAACAACACAAGACTTCGTGTGTAGTAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATAAGAGGTACATGGAGAAGATACATAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAACTGAACTCGATGAAGTTTACCATAATGTAGAAGAAGTGCCTCCTACAACACAAACACAGAGCCAAACTGGTTATGGTAGTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGTTCGGTACAGGATATTATGATGCAGGGGTCGATCCATCTAATTCTTACATGCATGGACTGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAATAGTACCAACAAGAACCAAAGAATCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTTGAAATCGACGACATCCGAGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAA

mRNA sequence

ATGGATGTGACTCAAGAATACATCCATTGGTATAATAATATTACGAGGCTCTACATCACTCGACCAGGAGCAGCCGTAGGTCATCTGAGATCGAACAACACAAGACTTCGTGTGTAGTAGATGATCCACAACAAGTCCTTGATATATGTAATAATAATAAGAGGTACATGGAGAAGATACATAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAACTGAACTCGATGAAGTTTACCATAATTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGTTCGGTACAGGATATTATGATGCAGGGGTCGATCCATCTAATTCTTACATGCATGGACTGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAATAGTACCAACAAGAACCAAAGAATCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTTGAAATCGACGACATCCGAGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAA

Coding sequence (CDS)

ATGATCCACAACAAGTCCTTGATATATGTAATAATAATAAGAGGTACATGGAGAAGATACATAATATGTACGATCTACCTATTGTACCTCCACCAGTTCATAGGGGACGTGTTCGAGTGGAAGAAACTGAACTCGATGAAGTTTACCATAATTCTGATGACGATGATGCCAACATTTGGAGCAGGATATTGTGATTCTGAGTTCGGTACAGGATATTATGATGCAGGGGTCGATCCATCTAATTCTTACATGCATGGACTGGACGTGGCTATGGGGAACATAACGAATATCTGTATCATGAAGCACCTACAGATGTATCAGATCGACAATAGTACCAACAAGAACCAAAGAATCAAGAGGACCAAGAACAACATAGAGTTCAGAGTCGACGTCGACAACCAGCTTGAAATCGACGACATCCGAGTTGTGGAACACATTGATTTTCTTTTATCAATCAAATAA

Protein sequence

MIHNKSLIYVIIIRGTWRRYIICTIYLLYLHQFIGDVFEWKKLNSMKFTIILMTMMPTFGAGYCDSEFGTGYYDAGVDPSNSYMHGLDVAMGNITNICIMKHLQMYQIDNSTNKNQRIKRTKNNIEFRVDVDNQLEIDDIRVVEHIDFLLSIK

Homology

[Close]

BLAST of MELO.jh013811.1 vs. NCBI nr
Match: KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (442), Expect = 9.98e-50
Identity = 86/110 (78.18%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 53  MTMMPTFGAGYCDSEFGTGYYDAGVDP---------SNSYMHGLDVAMGNITNICIMKHL 112
           MTMMPTFGAGYCDSE GTGYYDAG+ P         SNSYMHG   A+GNITNICIMKHL
Sbjct: 306 MTMMPTFGAGYCDSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHL 365

Query: 113 QMYQIDNSTNKNQRIKRTKNNIEFRVDVDNQLEIDDIRVVEHIDFLLSIK 153
           QMYQID STNKNQR KRT+NNIEFRV+VDNQL+ID+++VVEHIDFLLSIK
Sbjct: 366 QMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLSIK 415

[Close]

BLAST of MELO.jh013811.1 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 5.87e-33
Identity = 70/108 (64.81%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 52  LMTMMPTFGAGYCDSEFGTGYYDAGVDPSNSYM--HGL------DVAMGNITNICIMKHL 111
           LMTMMPTFG G+             +   +++M  H L      DVAMGNI NICIMKHL
Sbjct: 117 LMTMMPTFGVGFVILRSVEDIMMQSIHRLHTWMSVHQLLTCMDTDVAMGNIMNICIMKHL 176

Query: 112 QMYQIDNSTNKNQRIKRTKNNIEFRVDVDNQLEIDDIRVVEHIDFLLS 151
           QMYQID STNKNQR KRT+NNIE RVDV+NQLEIDD+RVVEHIDFLLS
Sbjct: 177 QMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVEHIDFLLS 224

[Close]

BLAST of MELO.jh013811.1 vs. NCBI nr
Match: KAA0066693.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK27843.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 4.09e-24
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 87  LDVAMGNITNICIMKHLQMYQIDNSTNKNQRIKRTKNNIEFRVDVDNQLEIDDI 140
           +DVAMGNITNICIMKHLQMYQID STNKNQR KRT+NNIEFRVDVDNQLEIDD+
Sbjct: 137 MDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

[Close]

BLAST of MELO.jh013811.1 vs. NCBI nr
Match: KAA0040939.1 (stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa] >TYK20318.1 stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 3.33e-21
Identity = 51/89 (57.30%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 53  MTMMPTFGAGYCDSEFGTGYYDAGVDPSNSYMHGLDVAMGNITNICIMKHLQMYQIDNST 112
           MTMMPTFGA YCDSE GTGYYD G                             YQID ST
Sbjct: 1   MTMMPTFGAEYCDSEVGTGYYDVG----------------------------RYQIDKST 60

Query: 113 NKNQRIKRTKNNIEFRVDVDNQLEIDDIR 141
           NKNQR KRT+NNIEF+VD+DNQLEIDDI+
Sbjct: 61  NKNQRTKRTQNNIEFKVDIDNQLEIDDIQ 61

[Close]

BLAST of MELO.jh013811.1 vs. NCBI nr
Match: TYK12245.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 7.63e-20
Identity = 48/81 (59.26%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 53  MTMMPTFGAGYCDSEFGTGYYDAGVDPSNSYMHGLDVAMGNITNICIMKHLQMYQIDNST 112
           MTMMPTFGAG+CDSE GTGYYDAG                            MYQID ST
Sbjct: 52  MTMMPTFGAGFCDSEVGTGYYDAG----------------------------MYQIDKST 104

Query: 113 NKNQRIKRTKNNIEFRVDVDN 133
           N+NQR KRTKNNIEFRVDVDN
Sbjct: 112 NENQRTKRTKNNIEFRVDVDN 104

[Close]

BLAST of MELO.jh013811.1 vs. ExPASy TrEMBL
Match: A0A5A7TDY5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00990 PE=4 SV=1)

HSP 1 Score: 174 bits (442), Expect = 4.83e-50
Identity = 86/110 (78.18%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 53  MTMMPTFGAGYCDSEFGTGYYDAGVDP---------SNSYMHGLDVAMGNITNICIMKHL 112
           MTMMPTFGAGYCDSE GTGYYDAG+ P         SNSYMHG   A+GNITNICIMKHL
Sbjct: 306 MTMMPTFGAGYCDSEVGTGYYDAGISPLSSYMDVGPSNSYMHGHGRALGNITNICIMKHL 365

Query: 113 QMYQIDNSTNKNQRIKRTKNNIEFRVDVDNQLEIDDIRVVEHIDFLLSIK 153
           QMYQID STNKNQR KRT+NNIEFRV+VDNQL+ID+++VVEHIDFLLSIK
Sbjct: 366 QMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFLLSIK 415

[Close]

BLAST of MELO.jh013811.1 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 2.84e-33
Identity = 70/108 (64.81%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 52  LMTMMPTFGAGYCDSEFGTGYYDAGVDPSNSYM--HGL------DVAMGNITNICIMKHL 111
           LMTMMPTFG G+             +   +++M  H L      DVAMGNI NICIMKHL
Sbjct: 117 LMTMMPTFGVGFVILRSVEDIMMQSIHRLHTWMSVHQLLTCMDTDVAMGNIMNICIMKHL 176

Query: 112 QMYQIDNSTNKNQRIKRTKNNIEFRVDVDNQLEIDDIRVVEHIDFLLS 151
           QMYQID STNKNQR KRT+NNIE RVDV+NQLEIDD+RVVEHIDFLLS
Sbjct: 177 QMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVEHIDFLLS 224

[Close]

BLAST of MELO.jh013811.1 vs. ExPASy TrEMBL
Match: A0A5A7VF64 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00200 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 1.98e-24
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 0


Query: 87  LDVAMGNITNICIMKHLQMYQIDNSTNKNQRIKRTKNNIEFRVDVDNQLEIDDI 140
           +DVAMGNITNICIMKHLQMYQID STNKNQR KRT+NNIEFRVDVDNQLEIDD+
Sbjct: 137 MDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

[Close]

BLAST of MELO.jh013811.1 vs. ExPASy TrEMBL
Match: A0A5A7TI03 (Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00480 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.61e-21
Identity = 51/89 (57.30%), Postives = 55/89 (61.80%), Query Frame = 0


Query: 53  MTMMPTFGAGYCDSEFGTGYYDAGVDPSNSYMHGLDVAMGNITNICIMKHLQMYQIDNST 112
           MTMMPTFGA YCDSE GTGYYD G                             YQID ST
Sbjct: 1   MTMMPTFGAEYCDSEVGTGYYDVG----------------------------RYQIDKST 60

Query: 113 NKNQRIKRTKNNIEFRVDVDNQLEIDDIR 141
           NKNQR KRT+NNIEF+VD+DNQLEIDDI+
Sbjct: 61  NKNQRTKRTQNNIEFKVDIDNQLEIDDIQ 61

[Close]

BLAST of MELO.jh013811.1 vs. ExPASy TrEMBL
Match: A0A5D3CL33 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00540 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.70e-20
Identity = 48/81 (59.26%), Postives = 50/81 (61.73%), Query Frame = 0


Query: 53  MTMMPTFGAGYCDSEFGTGYYDAGVDPSNSYMHGLDVAMGNITNICIMKHLQMYQIDNST 112
           MTMMPTFGAG+CDSE GTGYYDAG                            MYQID ST
Sbjct: 52  MTMMPTFGAGFCDSEVGTGYYDAG----------------------------MYQIDKST 104

Query: 113 NKNQRIKRTKNNIEFRVDVDN 133
           N+NQR KRTKNNIEFRVDVDN
Sbjct: 112 NENQRTKRTKNNIEFRVDVDN 104

The following BLAST results are available for this feature:

BLAST of MELO.jh013811.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041168.1	9.98e-50	78.18	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
KAA0040602.1	5.87e-33	64.81	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0066693.1	4.09e-24	90.74	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]
KAA0040939.1	3.33e-21	57.30	stress-response A/B barrel domain-containing protein [Cucumis melo var. makuwa] ...	[more]
TYK12245.1	7.63e-20	59.26	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of MELO.jh013811.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh013811.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TDY5	4.83e-50	78.18	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3C2V9	2.84e-33	64.81	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7VF64	1.98e-24	90.74	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5A7TI03	1.61e-21	57.30	Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A5D3CL33	3.70e-20	59.26	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of MELO.jh013811.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh013811.1.t1	MELO.jh013811.1.t1	mRNA