MELO.jh013688.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh013688.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGag/pol protein
Locationchr06: 23258987 .. 23269244 (+)
RNA-Seq ExpressionMELO.jh013688.1
SyntenyMELO.jh013688.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTCATTCATTCAGGTAAGAAGAGATTGTATTCATCTTCACTTAACCCTTTGTCTTGTCTTGGAAATTGGTGGGATATTTTGAATCTTTTTTGGAACACTTCTGGTTTGATGTTAAATGTGACTAAAATCTTGCTTATTGGTTTCAATATGAGTAAGGAGGGAGTTGAAGAATGGGCAGAGGAGTTTCAATATAAAATAGGAGTATTTCTGCTGTTTTTGTTCCTTCTTGGCGGTGGCGGCTGCAGCTACAAATGACTATATGAAGCTCTTCCTCTTGATTCTCTTCATATTCTCATAGTCTTGTTGTTTTTATGAGCTTTTGATGGCCATGAATTAGAATTCTTTCTGCTGTTTTTGTTCCTTCTTGGCAGCGGCGGCAGCAGCTACATATGCCTTGACACTGGAGGTTTTTAACATTCCTTTATGTTCAATGTGTAATCCTATTTCATCAACATCGGTTAAGAAACATTTCTCATGTATTAATTTAACAAATAAGAATGCTATCCTTAGGCTCACTTGTGGGTTAAAACTGTCAGTACACACGCATATATTGTTTTTCTTCTTCCAAAGATTTGGTTTACCTTTTCTAGTATGGATATGATTTTGGTTTCAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGCACTCAAAAGTATGTCCATAGATCAGTTTTCTCTCACTTCGTGTTTGCTTCTCTGTTCTTTATTCACACTCTTTAATTAATGGGGTTTTTGTTTAGGAGTGAATATTAGGTTTTCATAATGTGGGTGTTAATTGTTTGTGTATAATCACGTTTGTTGGTTGAAATTTTGTCTATTTAGGGTGAAATGGGTCTAGATTGCTGGCTTTTTGTTTATGTATTCGAGATAATTGTTGTTCTTTGGTTATTCTTTTTTGTTTATTGTAGTCCGATTTTTGGGACTTTTTTTTTATTTGAGACTATGTATATTGAGGAACTGAAGGAGGAAGGAGACTTACAGAGTGGGGAAGAGGGAAATTCGAATGACTACCACAACAGCTGAAAATAGGAACTTATACAAGAATAAGCTGGTGCCTTAGCTTAGTACTCAGTATTTGTTAATGCGAATTTACTTATATCATGCAATTTTTGGAGTGTTTTTCCCTTGGTTCTTTATTCTAGTTTCTGGTATTTTTAAATAATTTTTTATGATAATATTAATTCTCTTATTGATGAGATTAACGGTGATTGATTGGTTTCTAATAGAACACACACTTGCAATCCAAAATTCTTCAATCAGAAAGTACCCCAAAAACTAATCTTGGTATGACCAATTCTTTTTGCGTTTTTTTTCAAAATTCCTTCTCTGTACTAGTTATAAAAGTTTGCAAAATTTTATGATATTTTATGATTGACAGCTCTTGAGAAGATTAGAAGGCCTTTATATGAAAAACATCCCATGAGCAAATTTGCATGGACAATAGCTGAAGACACTGATACTGTAAGCATCCTTGTTAATCAGACCGTTGAAATAAAATTCCATCAACTCCACTGACTGACAGTTTAGAATTTTGAATGATTTCAAATCTTTTATGGTTTTTATATGAAGATGGAATGGTACAACATCTGCCAAGATGCCTTAAGAAAAGTCAATGAATCGTATCAAGGAAAAGAGACTGCTGACATCATTCAAAACAAAGTTTTGCAGGTACATATTATTCACATGTTTTTGTGGCTAAAATATCTTAGGCAATAGGTAAGAAGAGATTGTATTCATCTTCACTTAACCCTTTGTCTTGTCTTAGAAATTGGTGGGATATTTTAAATCTTTTTTCGAACACTTCTGGTTTGATGTTGAATGTGACTAAAATCTTGCTTATTGGTTTCAATATGAGTAAGGAGGGAGTTGAAGAATGGGCATAGGAGTTTCAATGTAAAATAGGAGCATTTCTGATTACGTTGAGAAATTTCCACGTCTGGTCGTACTTATGTTTGTACTTATTTTTTTTCCTAGCTTGAATTTCTTTTTAATTTATTAACATGAATCTATTAGGCTCGAGAGGAGGATGAGGAGATTAAATTCAATTGTGCTAATTACCAGCTTGAAATAATGAGATGCTTGAGAGAACTCAATGTTAACAACACTATTGGATGGTAAGCTTAGTTTTATGATACTGCATATTTATGGAAAACTTTAGCACTTTTACATATATGATCACAGGCTTGGTGATAGTGATTTAAGGGGCATGATTGTGATTTGTATCCAACTGTTATGTGGTCATAAATGGAATAAATAATTTGTCTGTAGTTTGATTATGAGATCTAATTGAAATTTTTTTGCACCTTGACTTCTACTTTTATTTTTTTAACTAACTCAGATTCCTGTTTATAGGATTGGAACATCAAATATTGGAGGCTGGAGCAGATATTTGGGTTACTTCATCTTACCAGGTTTGCAATGCCAATGGATTAATCTTTCTTTGTTTTTGTACTTTTCACTCTGTGATGGCTTTGGGGTGTCTTTCTTTTAAATGTTCTACTGTTGCTTTTTTAAAACTTGATGGTTTAAATCGAATATTTTCATGACAATGAATAGAACAAGTGAGGATCAAACTGATCACTCCTCTTGAATTGAAATCAAAAAGTTCAAAATGAGTGTTTCTGCTGATGGCTCAGAGTATAGGTGAATTTGAAACAATTAGTTACAAGGAGTTTGTAAATATTTGGTATTGACAATCTGATCTAAACCTATTTCCACCTCCCCTTTACATTGTTATCATCAACATAGCTGATCATTAATCCTATATTTGTTGTTGTGATGTTTTCTACTTCTTGTAGATTGGCTCTGCTATTGGTGGTACTTATTTTAGCTCATGAATTGGAGGTAGTAGAGGATGCAGAATGCAAGTTTATTTGAAGCCAAGTTTCATTCAAGGTCATTGAGTTCGGTTGATAGAAGTAATGTTTTGTATATGACAATATCGAACAAATATGTAAAGTTTTCGAAATGTTGATACATATATGGTAAAATGTTAATATATGTTAAAGTTTTGGAATTGTTCTAGTGCATATTTATGTTTGAGTTTTCAAACTATATTTGATGTATATTTGTCGTTTATATGTAGTTGAATTCTTGGACCAATGAGAGCATAATATAAGAACTAATAAATAAATTACAATTAAAAAATGAAAAATTGCTTGACGGTTCTGAAATGTCATGAACAATAAATTTCTTGACGGTTTGCAAATGTCATAAACAACGAAATTCTTGACGGTTCCAAAATGTCATAAACAATCACTTTCTTGACGGTTATTAAATGTCATGAAAATGCACTCTTGACGGTTTTAAAATGTCATGAATATTCATATTGTTGACGGTTTTTGTCATTCATAGTCACATTCTTGACGGTTCTAAACTGTCATTAAAACTTATAATCTCGACGGTTCTAAACTGTCATGAATAATTGAATACTTGACGGTTATAAACTGTCAACGTTAACAGTTCTTGACGTTTTTTACAACTGTCAAGAAAATTGCCTTTCTTGACACTGGATTCAATGACGGTTTTGAAACCGTCAAGAATAATCATTCTTGACAGTTTAAAACCGTCAAGAGAGGTAGTTTCTGTAGTAGTGATAACTCTTTACCTCCATGTGATTCCTTGTCTTGAAGGAAAGATGACCAAAAGATCTTTTACTGGAAAAAGTCTTAGAGCCAAAACACCTTTAGAGCTCGTACATTCGGACCTCTGTGGACCAATGAATGTCAAAGTTCGGGGAGGATATGAATATTTCATTAGTTTTATTGATGATTATTCAAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAATCTGATTCTTTTGAAAACTTCAAAGAACATAAGGTTGAAGTTGAAAATAAATCAGGTAAAACAATAAAGACACTTTGATCAGATCGAGGTGGAGAGTATATGGACTTGCGATTCCAGGACTATTTGATAGAACATGGAATCCAATCACAACTCTTTGCACCTAGTACACCTCAGCAAAATGATGTATCAGAAAGAAGAAACCAAACTTTGTTGGACATGGTTCGCTCTATGATGAGTTTTGCTCAGTTGCCAGATTCTTTTTGGGGATACGCTTTAGAAACAGTTATCTATATTTTAAACAACGTTCCCTCTAAAATTGTTTCTGAAACACCTTATGAGCTATGGAAAAGGTGTAAAGGTAGTTTACGTCACTTTAGAATTTGGGGATGTCCAGCACTTGCGTTGGTGCAAAACCCTAAAAAGTTGAAACGTCATTAAAAATTATGCCTATTTGTAGGTTATCCAAAAGAATCTAAAGGTGGTTTGTTTTATGACCCTCAAGAAAGTAAAGTATTTGTATCGACAAATGCTACGTTCTTAGAGGAAGACCACATAAGAAATTATCAAACTCGCAGTAAACTAGTATTAAAAGAAATTTCCAAGAATATAACAGATAGACCTAGTTTATCCACTAAAGTAGTTGATAAAACTAGGAGTGTTGGTCAAACACATCTTATCAAGAGTTGGGAGAACCTCGACGTAGTAGGAGGATTGTACGATAACCTGATCACTATTTGGGTTTAAGTGAAGCTCAAATCGTCATACCTGATAATGGAATAGAGGATCCATTGACCTATAAATAAGCAATGAATGATGTGGACTGTGACCAATGGATCAAAGCCATGGACCTCGAAATGAAATCTATATATTCCAATTCTGTCTGGACTCTAGTAGATCAATCAAATGATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCGACTAGTGGCAAAAGGTTATACACAAAAGGAGGGAGCGGATTATGAAGAAACTTTCTCTCATGTTGCCATGCTGAAGTCGATTAGAATACTCTTATCCATCGCTACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGATAGCTTTGAAATCTTGAGGAGAGTATCTATATGGTCCAACCAGAGGGGTCTATATAAAAGGGTCAAGAACAAATGGTTTGTAAGCTTCGAAAATCCATATATGGATTAAAACAAGCATCTAGATCCTAGAATATAAGGTTTGATAATGTGATCAAATCTTATAGTTTTGAACAAAATGTTGATGAACCTTGTGTTTCGATCATCAATTCCACTGTAGCATTCTTAATTCTGTATGTAGATGACATTCTACACATTGGGAATGATGTAGGTCATCTAACTAATATTAAGAGATGGCTAGCTACGCAATTCCGAATAAAAGATTTGGGAAATGCTCAATACGTTCTTGGAATCCAAATAGTTCGAAACCGAAAAAACAAAACACAAGCCATATCTCAAACATCTTATATAGACAAAATGTTGTCAAGATATAAGATGCAGAATTTTAAAAAAGGGTTGTTGTCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATAAGTAACATTCCCTATGCTTCTGTTTTTGGGAGCCTGATGTATGCAATGTTATGTATTAGACCTGACATTTGCTATTCAGTAGGGATGGTTAGTAGATATCAGTCAAATCCTGAACGTGATCATTGAACAGCCGTTAAGAATATTCTAAAATATCTTAGAAGAACAAAAGACTAAATACTTGTGTATGGTTCTAAGGATCTGATCCTTACTAGATACACAGACTCTGATTTTCAATCAGATAAAGATGCTAGAAAGTCTACATCGCACTAGAAGAAATCTGGCCTTTAATGTCGGTTAAAAAAATGAACACGGATCTTTAATGTCGGTTTTTAAAATGCGGATCTTTAATGTCGGTTTTAAACCGACATCAAAGATGAAGCTTTAATGTCGGTTTAAAACTGACATTAAAGATCCGTATTTTAAAAACCGACATTAAAGGTACATTCCAAACCTATATCCAAACACCCCAAAAAGGTAACCTATCAAACCTAACTCCCAATGACCCCACATATAAATACCTTCTATAGGGTTTTTTCATTTTCATTGCAGCTTCTTCAATAACACTAATCATGGTTGAGTGAGGAGGAGATCGCAGCGACTTTGGCAGAGGCTTCGGTGGTAGAGATCGTGGTGGCGATTGTGGATGTGGATGCCCTCGTGTTGGCCGCCATAACGAAGAGGACTGTTCTTCTATCGGCATTGTGTAGTTTCTCGCTTGAACATGGTGAGTTTTTGCTTAGACATGATCTGAAAAACGACGTGGTGGAAGAACAAGTGGAAATTTGGACGGATTTTGATTTTCTTTCTGAGTTTGGATCTTCAAAGACGGTGGTTGATGATACAGAGTTTTCTTATAATCCATGGCATGACAAGTAAGATTCACTATTTATATAATTTACATACGCTTATTCAATATTTTCCAGAATTATTTATTTATTTTAAGAGAACATAGGAAGTTTTTATCAATGTAAATTAAATAACCTAAATTTGAAGTATATTTTATAATTATCTATAAAATTATCATAAGATGGTCAACCCAAAGTAGCATTTCTTTGTTGTTGCAAACCCTTGAAATTCTTGCTCGTATTTTCTTGCAATTATAGGGTTCTATGTTCTTTGGTTATATATACCTGGACCATTTAACAAATACCCTTCATCTATGTTTCACAAATCTCAATTCATACAAGATTGTTATTTGATTTCAACCTTATATCACTATCCTTAAACTATATTATACTTGATTTAGACGGTCTTCTATTCTTTTTGTCCATACTTTCTAAGAACATTCTTATATCACCGTCCTTAAATTATCATTCATTAGAATTTAGAGGTCAGAAGGTCATTAGTTTCATAAACAATAGAAGTTAAAAATTCCTCTATCTTTATTAAAGAAATATTATTTCATAAAATTAGTATACTGTTGGAAAAGGACTTATGTTTATCAAATTAGTGTACTTATGTTTATCAATAATAACCTAGACCATTATGCTAAGTATTCGAACTAGACACTTATCACATTTGGATTTTCGGCTTGTTGAATCTGTTCTCGAATGATTCGGTTTGCTTTGAACCTTTTTTTGTGTTAAATAAGCTGGTTTCTATTTTTAACATTTTTGTTTTGTTTGTGATGTTTACTGAATTATGTAGGTTTCGACTGCGAGGACTTGCAATTGTATTTTTGTATATATTTTTTGCTTCAGCAAAGGCAGCGTGACATTGAGTTTAGGAAATCTTATAATGAACAGAGATAGAGGTAACAACATTTTCTAACGTTAATGTATTGTAGGACATTACCAAAGGCTTCAATTATGAGTAAATTTGTATGACTATGCTAAGAAATTTATGAAATTATGCTTTGTTTGGTTATCTTATGGATATTTAGTATGTCAGATATCGAAAAGTGATGCACTTGATGCATTGGGTTTGGTTCGCTCCTGTGGTAGGCGAATGTTGATGTTGACCTTATTGAGAAGCTTTTTAATTACAATACCTTATTGAAAAAGTATCCAAAAATAGATATGACTAATATTGCATTATACGACCAATTTTTGTTGCAATCCTTTAAGAAACAAACATCATTAATAAGCTTTATGATTTATGTATCACTTACCTATTCAAAGTTTATCATCAAACACATTTGTACAATTTGGTACTGGCCTTCTAAACTTGTACAGGCATAAACACCTAGTGGCTAACATTGTATTACAGATTTTGGCAAGCCAGTTGATGTAGATAACATTTTAGAGATTTGTGGATGTTATATTGCAGTTTGAACCTATTAAGTTTTTACTATTCTCGTGTGCAAAATGTATATAAGTGCCTCAATTTATTAGTTCATATCATGCTAACGATTATATCCTAACTAGCTACGTTTTCTTTCAACTTATGCTCTATCTTTTCTGAAGGAAAAAGGAATACTTGTGTGATTGTTATCTTGTTAATATGTTTTTCTAGAGTTGTGACTTTAGCAATATTTTTCTTCTCTCAGCCTTATACTCCCTCAACAATCATCTGCACGATGAGGTTCACAAGCTTGCTGCAAAATTCAAGAAAAGTTATGTGTGGTAACAAATCCTTTGCTTTATTAATTAGTAATCAAAGGAGGAAGGAAACCATAGAATAGTATCAACTTATTTGTGCACACAATGGTTTCACTTTGGTTGATTTAGTGACTTATAATAGTAGACATAATTTAGCAAATGGTGAAGACAACTTATTTATGCATCTCATGAGATCATCGTTGATGTGGTATTAAGATCATCTCACAAGTTCTTTACTTGTTAGTGAATTATTACCTAGTTGTGGCCATTTCCAATACGTATTCCTACCACATAGGCCAAGAAAAACCAATCCAAAATTCTACTTTTGGCCATCAATTATTTGCTCTTTAATTAGCTTTTTTCTACACTGGGAAGTAGATTACGCTCATTCTGAGAATGGGAAGATTGGATTTTTGTTTGTAAAAGTTGGATTGGAGTATTCTTTTTCAGGTTATAGATAGTGAACATATGAGAAATTAGATATTGATTATAGCTATATTGGTTATGGAGTTGTTTGCTGTTTTGCTTTATAATGTGGTTATGTTGTTCAAATCAGATTCTTGTTTTTGATGGCTCTATTGTAATAATTGTTGTTTAGCCATAAGAACACCCAAGAGATATATTGTTCTCTTATCTGTGTAATCAAGCAAATCACAAGCACCAAATAATATGTAGGAAATTGATGGTTCAAGTTCAAACTTCAGTCAACTGTTTGGAATTGAACGTATTATACAAAAAAGTTTATCTTACCATGTTTCCAAATTTTTTTTTAGGAAGACTTGAATGAACAAGTTCCAATATTATCTTGGTAAGACTGTTATGTGGTTGCACTTGGTTTAGAAATTTTTTTTGGTGGTGTTGTTTCAAATACTGTTTAACAATTTAGAAAAGCGGGAAGTTTAATTATGTGAGGAAAAAACTGTTTTGGTGGTGATTTTATGTTTGGTTCTTTTGTTTGGCAATGAAAAGACTATTATGGTGGTGACTATTTCTCAAAATTTGACTTGGTTTTTGAAAAACATGAATAGAAAGTTGATAACAAAACAAGAAATGTAGATGTGGTCACTTATTAGATGCTTGGATCTTTTTATGCACTTATATTTTTCAAGTAACTAAAAGAGAATTTGTTCATGGGAAGTTAACAAAATCTTGCCTTTGTTTGGAACTATCATATCATCCTCATTTTGATATTTTGATATTTCTACTAGCAACTAGGTCATAACATTGTTACTTATCAATTCAACCATCTTGATGTCTTTTACAGGGAGTTATCACTAAACAAATGACTGCAATAGAAGAAATGGTTGCAAGTGAGTACAATTAGCCAGACCCTCATCTTTGTGACAAGATCTTGAAGTTGGTCATTTGTGAAGCGTTCTAGTTTGCTATTAGTTGCAGTTTTAGTTATTGCTCTCTCAATATATTCTTTTTCTTTTTTTTTTTCTTTTTTTTTTCCAAAGGATGATCAGTGTAATAATTAAGCTTCATAATTTCTGTGTTTGGATCCAAGTTGTATGTACATTACATTATTAAGATTTCATTTTGTATATGTACAAGTAAAAGATTTCATTTTTAACTATTTGGTGTCATACAAAATGGACAATAATGCAAGGATTTAATAAAAATAAATTTGAAAAAACGACATTAAAGACATCGTTAATGTCGGTTTCAAAACGACATCAAAGACAGCTTTAATGTCGGTTAAAAAAAATTAAAGACATCTTTAATGTCGATTCAAAAAAATTAAAGACATCTTTAGTGTCAGTGAAAAAACGACATTAAAGATGTATCATAAGCGACAATAAAGACATATTTAATGTCGGTTATCCACCGACATTAAAGGCCTTCAATAACACCTTTAAAGATGTCGGTTTATAACCGACATTAAAGCCCAACCGACATTAAAGCCCAACCGACATGAAAGCCCTTTAATAACGCTCGCAAAGATGTCGGTCGCCAAGTGACATTAAAGGCCTTTAATATCGGTTTTAAACCGACATTAAAGGCCAGATTTCTTGTAGTGTCGGGATCAGTTTTCACCCTGAATGGTGGAGCAGTAGTATTGAGAAACATAAAACAATCATGTATTGCCGACTCCACTATGGAAGCTCAATATGTAGCAGCTTGTGAAGTAGCAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGTCAATCACCTTATACTATGACTAG

mRNA sequence

ATGACCTTCATTCATTCAGCGGCGGCAGCAGCTACATATGCCTTGACACTGGAGATTTGGTTTACCTTTTCTAGTATGGATATGATTTTGGTTTCAGGAGAAGATTTAATTGCTCCATGCCATTGCAAAGGCACTCAAAAGAGGAAGGAGACTTACAGAGTGGGGAAGAGGGAAATTCGAATGACTACCACAACAGCTGAAAATAGGAACTTATACAAGAATAAGCTGAACACACACTTGCAATCCAAAATTCTTCAATCAGAAAGTACCCCAAAAACTAATCTTGCTCTTGAGAAGATTAGAAGGCCTTTATATGAAAAACATCCCATGAGCAAATTTGCATGGACAATAGCTGAAGACACTGATACTATGGAATGGTACAACATCTGCCAAGATGCCTTAAGAAAAGTCAATGAATCGTATCAAGGAAAAGAGACTGCTGACATCATTCAAAACAAAGTTTTGCAGGCTCGAGAGGAGGATGAGGAGATTAAATTCAATTGTGCTAATTACCAGCTTGAAATAATGAGATGCTTGAGAGAACTCAATGTTAACAACACTATTGGATGGCTTGGTGATAGTGATTTAAGGGGCATGATTGTGATTTGTATCCAACTATTCCTGTTTATAGGATTGGAACATCAAATATTGGAGGCTGGAGCAGATATTTGGGTTACTTCATCTTACCAGGTTTGCAATGCCAATGGATTAATCTTTCTTTGTTTTTGTACTTTTCACTCTGTGATGGCTTTGGGGTATGGTCATGTTTACCTAATTCAGAACAAGTCTGATTCTTTTGAAAAATCTGATTCTTTTGAAAACTTCAAAGAACATAAGGTTGAAGTTGAAAATAAATCAGGTAAAACAATAAAGACACTTTGATCAGATCGAGGTGGAGAGTATATGGACTTGCGATTCCAGGACTATTTGATAGAACATGGAATCCAATCACAACTCTTTGCACCTAGTACACCTCAGCAAAATGATGTATCAGAAAGAAGAAACCAAACTTTGTTGGACATGGTTCGCTCTATGATGAGTTTTGCTCAGTTGCCAGATTCTTTTTGGGGATACGCTTTAGAAACAGTTATCTATATTTTAAACAACGTTCCCTCTAAAATTGTTTCTGAAACACCTTATGAGCTATGGAAAAGGTGTAAAGGTAGTTTACGTCACTTTAGAATTTGGGGATGTCCAGCACTTGCGTTGGTGCAAAACCCTAAAAAGTTGAAACGTCATTAAAAATTATGCCTATTTGTAGGTTATCCAAAAGAATCTAAAGGTGGTTTGTTTTATGACCCTCAAGAAAGTAAAGTATTTGTATCGACAAATGCTACGTTCTTAGAGGAAGACCACATAAGAAATTATCAAACTCGCAGTAAACTAGTATTAAAAGAAATTTCCAAGAATATAACAGATAGACCTAGTTTATCCACTAAAGTAGTTGATAAAACTAGGAGTGTTGGTCAAACACATCTTATCAAGAGTTGGGAGAACCTCGACGTAGTAGGAGGATTGTACGATAACCTGATCACTATTTGGGTTTAAGTGAAGCTCAAATCGTCATACCTGATAATGGAATAGAGGATCCATTGACCTATAAATAAGCAATGAATGATGTGGACTGTGACCAATGGATCAAAGCCATGGACCTCGAAATGAAATCTATATATTCCAATTCTGTCTGGACTCTAGTAGATCAATCAAATGATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCGACTAGTGGCAAAAGATGGATGTCAAGATAGCTTTGAAATCTTGAGGAGAGTATCTATATGGTCCAACCAGAGGGATGACATTCTACACATTGGGAATGATGTAGGTCATCTAACTAATATTAAGAGATGGCTAGCTACGCAATTCCGAATAAAAGATTTGGGAAATGCTCAATACGTTCTTGGAATCCAAATAGTTCGAAACCGAAAAAACAAAACACAAGCCATATCTCAAACATCTTATATAGACAAAATGTTGTCAAGATATAAGATGCAGAATTTTAAAAAAGGGTTGTTGTCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATAAGTAACATTCCCTATGCTTCTGTTTTTGGGAGCCTGATGTATGCAATGTTATGTATTAGACCTGACATTTGCTATTCAGTAGGGATGGAGGAGATCGCAGCGACTTTGGCAGAGGCTTCGGTGGTAGAGATCGTGGTGGCGATTGTGGATGTGGATGCCCTCGTGTTGGCCGCCATAACGAAGAGGACTGTTCTTCTATCGGCATTGTGTAGTTTCTCGCTTGAACATGGTGAGTTTTTGCTTAGACATGATCTGAAAAACGACGTGGTGGAAGAACAAGTGGAAATTTGGACGGATTTTGATTTTCTTTCTGAGTTTGGATCTTCAAAGACGGTGGTTGATGATACAGAGTTTTCTTATAATCCATGGCATGACAACAAAGGCAGCGTGACATTGAGTTTAGGAAATCTTATAATGAACAGAGATAGAGTATGTCAGATATCGAAAAGTGATGCACTTGATGCATTGGGTTTGGTTCGCTCCTGTGGTAGGCGAATGTTGATGTTGACCTTATTGAGAAGCTTTTTAATTACAATACCTTATTGAAAAAGTATCCAAAAATAGATATGACTAATATTGCATTATACGACCAATTTTTGTTGCAATCCTTTAAGAAACAAACATCATTAATAAGCTTTATGATTTATAGTTGTGACTTTAGCAATATTTTTCTTCTCTCAGCCTTATACTCCCTCAACAATCATCTGCACGATGAGGTTCACAAGCTTGCTGCAAAATTCAAGAAAAGTTATGGAGTTATCACTAAACAAATGACTGCAATAGAAGAAATGGTTGCAATGTCGGGATCAGTTTTCACCCTGAATGGTGGAGCAGTAGTATTGAGAAACATAAAACAATCATGTATTGCCGACTCCACTATGGAAGCTCAATATGTAGCAGCTTGTGAAGTAGCAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAACAGATTTGGAAGTTGTTCCAAATATGCATCTGTCAATCACCTTATACTATGACTAG

Coding sequence (CDS)

ATGAATGATGTGGACTGTGACCAATGGATCAAAGCCATGGACCTCGAAATGAAATCTATATATTCCAATTCTGTCTGGACTCTAGTAGATCAATCAAATGATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTTCAAAGCTCGACTAGTGGCAAAAGATGGATGTCAAGATAGCTTTGAAATCTTGAGGAGAGTATCTATATGGTCCAACCAGAGGGATGACATTCTACACATTGGGAATGATGTAGGTCATCTAACTAATATTAAGAGATGGCTAGCTACGCAATTCCGAATAAAAGATTTGGGAAATGCTCAATACGTTCTTGGAATCCAAATAGTTCGAAACCGAAAAAACAAAACACAAGCCATATCTCAAACATCTTATATAGACAAAATGTTGTCAAGATATAAGATGCAGAATTTTAAAAAAGGGTTGTTGTCGTACAGATATGGAATTCATTTATCAAAAGAACAATGTCCAAAGACACCTCAAGAAGTTGAGGATATAAGTAACATTCCCTATGCTTCTGTTTTTGGGAGCCTGATGTATGCAATGTTATGTATTAGACCTGACATTTGCTATTCAGTAGGGATGGAGGAGATCGCAGCGACTTTGGCAGAGGCTTCGGTGGTAGAGATCGTGGTGGCGATTGTGGATGTGGATGCCCTCGTGTTGGCCGCCATAACGAAGAGGACTGTTCTTCTATCGGCATTGTGTAGTTTCTCGCTTGAACATGGTGAGTTTTTGCTTAGACATGATCTGAAAAACGACGTGGTGGAAGAACAAGTGGAAATTTGGACGGATTTTGATTTTCTTTCTGAGTTTGGATCTTCAAAGACGGTGGTTGATGATACAGAGTTTTCTTATAATCCATGGCATGACAACAAAGGCAGCGTGACATTGAGTTTAGGAAATCTTATAATGAACAGAGATAGAGTATGTCAGATATCGAAAAGTGATGCACTTGATGCATTGGGTTTGGTTCGCTCCTGTGGTAGGCGAATGTTGATGTTGACCTTATTGAGAAGCTTTTTAATTACAATACCTTATTGA

Protein sequence

MNDVDCDQWIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKDGCQDSFEILRRVSIWSNQRDDILHIGNDVGHLTNIKRWLATQFRIKDLGNAQYVLGIQIVRNRKNKTQAISQTSYIDKMLSRYKMQNFKKGLLSYRYGIHLSKEQCPKTPQEVEDISNIPYASVFGSLMYAMLCIRPDICYSVGMEEIAATLAEASVVEIVVAIVDVDALVLAAITKRTVLLSALCSFSLEHGEFLLRHDLKNDVVEEQVEIWTDFDFLSEFGSSKTVVDDTEFSYNPWHDNKGSVTLSLGNLIMNRDRVCQISKSDALDALGLVRSCGRRMLMLTLLRSFLITIPY
Homology
[Close]
BLAST of MELO.jh013688.1 vs. NCBI nr
Match: KAA0067819.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 320 bits (820), Expect = 1.35e-98
Identity = 167/242 (69.01%), Postives = 179/242 (73.97%), Query Frame = 0 

Query: 1   MNDVDCDQWIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           +NDVDCDQWIK +DLEM+S+YSNSVWTLVDQ NDVKPIGCKWIYKRKRDQAGKVQTFKAR
Sbjct: 454 INDVDCDQWIKVIDLEMESMYSNSVWTLVDQQNDVKPIGCKWIYKRKRDQAGKVQTFKAR 513

Query: 61  LV---------------------------------AKDGCQDSFEILRRVSIWSNQRDDI 120
           LV                                   + C     I   V+      DDI
Sbjct: 514 LVMDVKTAFLNRSLEESIYMVQPEGFIQKGQEQNNVDEPCVYKRIINSTVAFLVMYVDDI 573

Query: 121 LHIGNDVGHLTNIKRWLATQFRIKDLGNAQYVLGIQIVRNRKNKTQAISQTSYIDKMLSR 180
           L IGNDVGHLT+IK+WLATQF++KDLGNAQYVLGIQIVRNRKNKT A+SQTSYIDKMLSR
Sbjct: 574 LLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSR 633

Query: 181 YKMQNFKKGLLSYRYGIHLSKEQCPKTPQEVEDISNIPYASVFGSLMYAMLCIRPDICYS 209
           YKMQN KKGLL Y YGIHLSKEQCPKTPQEVED+SNI YA   GSLMYAMLC  PDICYS
Sbjct: 634 YKMQNSKKGLLPYIYGIHLSKEQCPKTPQEVEDMSNISYAFAIGSLMYAMLCTIPDICYS 693

[Close]
BLAST of MELO.jh013688.1 vs. NCBI nr
Match: TYK23767.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 313 bits (802), Expect = 2.51e-98
Identity = 169/255 (66.27%), Postives = 184/255 (72.16%), Query Frame = 0 

Query: 1   MNDVDCDQWIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKAMDLEM+S+YSNSVWTLVDQ ++V+PIGCKWIYKRKRDQAGKVQTFKAR
Sbjct: 131 MNDVDCDQWIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKAR 190

Query: 61  LVAKDGC------------QDSFEILRRVSIWSNQR------------------------ 120
           LVAK+G             Q S   L++ S   + R                        
Sbjct: 191 LVAKEGIIQKGQEQKVCKLQKSIYGLKQASRSWDIRFDTAIKSYGLEQNVDESCVYKRIF 250

Query: 121 -----------DDILHIGNDVGHLTNIKRWLATQFRIKDLGNAQYVLGIQIVRNRKNKTQ 180
                      DDIL I NDVGHLT+IK+WLA QF++K LGNA YVL IQIVRNRKNKT 
Sbjct: 251 NSTVAFLVPYVDDILLIWNDVGHLTDIKQWLAMQFQMKYLGNAPYVLDIQIVRNRKNKTL 310

Query: 181 AISQTSYIDKMLSRYKMQNFKKGLLSYRYGIHLSKEQCPKTPQEVEDISNIPYASVFGSL 208
           A+SQTSYIDKMLSRYKMQN KK LL YRYGIHLSKEQCPKTPQEVED+SNIPYA   GSL
Sbjct: 311 AMSQTSYIDKMLSRYKMQNSKKCLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYAFAIGSL 370

[Close]
BLAST of MELO.jh013688.1 vs. NCBI nr
Match: TYJ97443.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 310 bits (794), Expect = 5.09e-98
Identity = 156/209 (74.64%), Postives = 173/209 (82.78%), Query Frame = 0 

Query: 1   MNDVDCDQWIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           M+DVD DQWIKAM+LEM+S+YSNSVWTLVDQ NDV+PIGCKWIYKRKRDQA KVQTFKAR
Sbjct: 220 MSDVDSDQWIKAMNLEMESMYSNSVWTLVDQPNDVRPIGCKWIYKRKRDQACKVQTFKAR 279

Query: 61  LVAKDGCQDSFEILRRVSIWSNQRDDILHIGNDVGHLTNIKRWLATQFRIKDLGNAQYVL 120
           LVAKD                    D L  GNDVG LT+IK+WLATQF++KDLGNAQYVL
Sbjct: 280 LVAKD--------------------DNLLTGNDVGRLTDIKKWLATQFQMKDLGNAQYVL 339

Query: 121 GIQIVRNRKNKTQAISQTSYIDKMLSRYKMQNFKKGLLSYRYGIHLSKEQCPKTPQEVED 180
            IQIVR+RKNKT A+SQTSYIDKMLSRYKMQN KKG+L YRYGIHLSKEQCPKTPQEV+D
Sbjct: 340 SIQIVRDRKNKTLAMSQTSYIDKMLSRYKMQNSKKGVLPYRYGIHLSKEQCPKTPQEVKD 399

Query: 181 ISNIPYASVFGSLMYAMLCIRPDICYSVG 209
           +SNIPYAS   SL+YAMLC R D+CYS+G
Sbjct: 400 MSNIPYASTVESLIYAMLCTRLDLCYSMG 408

[Close]
BLAST of MELO.jh013688.1 vs. NCBI nr
Match: KAA0058854.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 313 bits (802), Expect = 5.96e-97
Identity = 169/255 (66.27%), Postives = 184/255 (72.16%), Query Frame = 0 

Query: 1   MNDVDCDQWIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKAMDLEM+S+YSNSVWTLVDQ ++V+PIGCKWIYKRKRDQAGKVQTFKAR
Sbjct: 257 MNDVDCDQWIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKAR 316

Query: 61  LVAKDGC------------QDSFEILRRVSIWSNQR------------------------ 120
           LVAK+G             Q S   L++ S   + R                        
Sbjct: 317 LVAKEGIIQKGQEQKVCKLQKSIYGLKQASRSWDIRFDTAIKSYGLEQNVDESCVYKRIF 376

Query: 121 -----------DDILHIGNDVGHLTNIKRWLATQFRIKDLGNAQYVLGIQIVRNRKNKTQ 180
                      DDIL I NDVGHLT+IK+WLA QF++K LGNA YVL IQIVRNRKNKT 
Sbjct: 377 NSTVAFLVPYVDDILLIWNDVGHLTDIKQWLAMQFQMKYLGNAPYVLDIQIVRNRKNKTL 436

Query: 181 AISQTSYIDKMLSRYKMQNFKKGLLSYRYGIHLSKEQCPKTPQEVEDISNIPYASVFGSL 208
           A+SQTSYIDKMLSRYKMQN KK LL YRYGIHLSKEQCPKTPQEVED+SNIPYA   GSL
Sbjct: 437 AMSQTSYIDKMLSRYKMQNSKKCLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYAFAIGSL 496

[Close]
BLAST of MELO.jh013688.1 vs. NCBI nr
Match: KAA0064270.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK18638.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 314 bits (804), Expect = 1.18e-96
Identity = 169/248 (68.15%), Postives = 184/248 (74.19%), Query Frame = 0 

Query: 1   MNDVDCDQWIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKA+DL+M+ +YSN  WTLVDQ NDV PIGCKWIYKRKRDQAGKVQTFKA+
Sbjct: 450 MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 509

Query: 61  LVAKDGCQD----------------SFEILRRVS------IWS----NQR---------- 120
           LVAK   Q                 S  IL  ++      IW     N+R          
Sbjct: 510 LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKNKRIINSTVAFLV 569

Query: 121 ---DDILHIGNDVGHLTNIKRWLATQFRIKDLGNAQYVLGIQIVRNRKNKTQAISQTSYI 180
              DDIL IGNDVGHLT+IK+WLATQF++KDLGNAQYVLGIQIVRNRKNKT A+SQTSYI
Sbjct: 570 LYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYI 629

Query: 181 DKMLSRYKMQNFKKGLLSYRYGIHLSKEQCPKTPQEVEDISNIPYASVFGSLMYAMLCIR 209
           DKMLSRYKM N KKGLLSYRYGIHLSKEQC KTPQEVED+SNIPYAS  GSLMYAML  R
Sbjct: 630 DKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAMLYTR 689

[Close]
BLAST of MELO.jh013688.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.0e-23
Identity = 54/126 (42.86%), Postives = 83/126 (65.87%), Query Frame = 0 

Query: 85   DDILHIGNDVGHLTNIKRWLATQFRIKDLGNAQYVLGIQIVRNRKNKTQAISQTSYIDKM 144
            DD+L +G D G +  +K  L+  F +KDLG AQ +LG++IVR R ++   +SQ  YI+++
Sbjct: 1010 DDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERV 1069

Query: 145  LSRYKMQNFKKGLLSYRYGIHLSKEQCPKTPQEVEDISNIPYASVFGSLMYAMLCIRPDI 204
            L R+ M+N K         + LSK+ CP T +E  +++ +PY+S  GSLMYAM+C RPDI
Sbjct: 1070 LERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDI 1129

Query: 205  CYSVGM 211
             ++VG+
Sbjct: 1130 AHAVGV 1135


HSP 2 Score: 52.8 bits (125), Expect = 9.7e-06
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 0 

Query: 7   DQWIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAK 65
           +Q +KAM  EM+S+  N  + LV+     +P+ CKW++K K+D   K+  +KARLV K
Sbjct: 824 NQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVK 881

[Close]
BLAST of MELO.jh013688.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-09
Identity = 40/130 (30.77%), Postives = 65/130 (50.00%), Query Frame = 0 

Query: 85   DDILHIGNDVGHLTNIKRWLATQFRIKDLGNAQYVLGIQIVRNRKNKTQAISQTSYIDKM 144
            DD++    D+  + N KR+L  +FR+ DL   ++ +GI+I    +     +SQ++Y+ K+
Sbjct: 1089 DDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKI 1148

Query: 145  LSRYKMQNFKKGLL----SYRYGIHLSKEQCPKTPQEVEDISNIPYASVFGSLMYAMLCI 204
            LS++ M+N             Y +  S E C           N P  S+ G LMY MLC 
Sbjct: 1149 LSKFNMENCNAVSTPLPSKINYELLNSDEDC-----------NTPCRSLIGCLMYIMLCT 1205

Query: 205  RPDICYSVGM 211
            RPD+  +V +
Sbjct: 1209 RPDLTTAVNI 1205

[Close]
BLAST of MELO.jh013688.1 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.1e-04
Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = 0 

Query: 9  WIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAK 65
          W +AM  E+ ++  N  W LV    +   +GCKW++K K    G +   KARLVAK
Sbjct: 40 WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAK 95

[Close]
BLAST of MELO.jh013688.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 4.1e-04
Identity = 23/59 (38.98%), Postives = 34/59 (57.63%), Query Frame = 0 

Query: 7    DQWIKAMDLEMKSIYSNSVWTLV-DQSNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAK 65
            D+W +AM  E+ +   N  W LV      V  +GC+WI+ +K +  G +  +KARLVAK
Sbjct: 949  DRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAK 1007

[Close]
BLAST of MELO.jh013688.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 6.9e-04
Identity = 22/59 (37.29%), Postives = 34/59 (57.63%), Query Frame = 0 

Query: 7    DQWIKAMDLEMKSIYSNSVWTLV-DQSNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAK 65
            ++W  AM  E+ +   N  W LV    + V  +GC+WI+ +K +  G +  +KARLVAK
Sbjct: 966  ERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAK 1024

[Close]
BLAST of MELO.jh013688.1 vs. ExPASy TrEMBL
Match: A0A5A7VRN6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00230 PE=4 SV=1)

HSP 1 Score: 320 bits (820), Expect = 6.55e-99
Identity = 167/242 (69.01%), Postives = 179/242 (73.97%), Query Frame = 0 

Query: 1   MNDVDCDQWIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           +NDVDCDQWIK +DLEM+S+YSNSVWTLVDQ NDVKPIGCKWIYKRKRDQAGKVQTFKAR
Sbjct: 454 INDVDCDQWIKVIDLEMESMYSNSVWTLVDQQNDVKPIGCKWIYKRKRDQAGKVQTFKAR 513

Query: 61  LV---------------------------------AKDGCQDSFEILRRVSIWSNQRDDI 120
           LV                                   + C     I   V+      DDI
Sbjct: 514 LVMDVKTAFLNRSLEESIYMVQPEGFIQKGQEQNNVDEPCVYKRIINSTVAFLVMYVDDI 573

Query: 121 LHIGNDVGHLTNIKRWLATQFRIKDLGNAQYVLGIQIVRNRKNKTQAISQTSYIDKMLSR 180
           L IGNDVGHLT+IK+WLATQF++KDLGNAQYVLGIQIVRNRKNKT A+SQTSYIDKMLSR
Sbjct: 574 LLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYIDKMLSR 633

Query: 181 YKMQNFKKGLLSYRYGIHLSKEQCPKTPQEVEDISNIPYASVFGSLMYAMLCIRPDICYS 209
           YKMQN KKGLL Y YGIHLSKEQCPKTPQEVED+SNI YA   GSLMYAMLC  PDICYS
Sbjct: 634 YKMQNSKKGLLPYIYGIHLSKEQCPKTPQEVEDMSNISYAFAIGSLMYAMLCTIPDICYS 693

[Close]
BLAST of MELO.jh013688.1 vs. ExPASy TrEMBL
Match: A0A5D3DJL5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00880 PE=4 SV=1)

HSP 1 Score: 313 bits (802), Expect = 1.21e-98
Identity = 169/255 (66.27%), Postives = 184/255 (72.16%), Query Frame = 0 

Query: 1   MNDVDCDQWIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKAMDLEM+S+YSNSVWTLVDQ ++V+PIGCKWIYKRKRDQAGKVQTFKAR
Sbjct: 131 MNDVDCDQWIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKAR 190

Query: 61  LVAKDGC------------QDSFEILRRVSIWSNQR------------------------ 120
           LVAK+G             Q S   L++ S   + R                        
Sbjct: 191 LVAKEGIIQKGQEQKVCKLQKSIYGLKQASRSWDIRFDTAIKSYGLEQNVDESCVYKRIF 250

Query: 121 -----------DDILHIGNDVGHLTNIKRWLATQFRIKDLGNAQYVLGIQIVRNRKNKTQ 180
                      DDIL I NDVGHLT+IK+WLA QF++K LGNA YVL IQIVRNRKNKT 
Sbjct: 251 NSTVAFLVPYVDDILLIWNDVGHLTDIKQWLAMQFQMKYLGNAPYVLDIQIVRNRKNKTL 310

Query: 181 AISQTSYIDKMLSRYKMQNFKKGLLSYRYGIHLSKEQCPKTPQEVEDISNIPYASVFGSL 208
           A+SQTSYIDKMLSRYKMQN KK LL YRYGIHLSKEQCPKTPQEVED+SNIPYA   GSL
Sbjct: 311 AMSQTSYIDKMLSRYKMQNSKKCLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYAFAIGSL 370

[Close]
BLAST of MELO.jh013688.1 vs. ExPASy TrEMBL
Match: A0A5D3BDQ7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold939G00170 PE=4 SV=1)

HSP 1 Score: 310 bits (794), Expect = 2.47e-98
Identity = 156/209 (74.64%), Postives = 173/209 (82.78%), Query Frame = 0 

Query: 1   MNDVDCDQWIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           M+DVD DQWIKAM+LEM+S+YSNSVWTLVDQ NDV+PIGCKWIYKRKRDQA KVQTFKAR
Sbjct: 220 MSDVDSDQWIKAMNLEMESMYSNSVWTLVDQPNDVRPIGCKWIYKRKRDQACKVQTFKAR 279

Query: 61  LVAKDGCQDSFEILRRVSIWSNQRDDILHIGNDVGHLTNIKRWLATQFRIKDLGNAQYVL 120
           LVAKD                    D L  GNDVG LT+IK+WLATQF++KDLGNAQYVL
Sbjct: 280 LVAKD--------------------DNLLTGNDVGRLTDIKKWLATQFQMKDLGNAQYVL 339

Query: 121 GIQIVRNRKNKTQAISQTSYIDKMLSRYKMQNFKKGLLSYRYGIHLSKEQCPKTPQEVED 180
            IQIVR+RKNKT A+SQTSYIDKMLSRYKMQN KKG+L YRYGIHLSKEQCPKTPQEV+D
Sbjct: 340 SIQIVRDRKNKTLAMSQTSYIDKMLSRYKMQNSKKGVLPYRYGIHLSKEQCPKTPQEVKD 399

Query: 181 ISNIPYASVFGSLMYAMLCIRPDICYSVG 209
           +SNIPYAS   SL+YAMLC R D+CYS+G
Sbjct: 400 MSNIPYASTVESLIYAMLCTRLDLCYSMG 408

[Close]
BLAST of MELO.jh013688.1 vs. ExPASy TrEMBL
Match: A0A5A7UUR4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00140 PE=4 SV=1)

HSP 1 Score: 313 bits (802), Expect = 2.89e-97
Identity = 169/255 (66.27%), Postives = 184/255 (72.16%), Query Frame = 0 

Query: 1   MNDVDCDQWIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKAMDLEM+S+YSNSVWTLVDQ ++V+PIGCKWIYKRKRDQAGKVQTFKAR
Sbjct: 257 MNDVDCDQWIKAMDLEMESMYSNSVWTLVDQPSEVRPIGCKWIYKRKRDQAGKVQTFKAR 316

Query: 61  LVAKDGC------------QDSFEILRRVSIWSNQR------------------------ 120
           LVAK+G             Q S   L++ S   + R                        
Sbjct: 317 LVAKEGIIQKGQEQKVCKLQKSIYGLKQASRSWDIRFDTAIKSYGLEQNVDESCVYKRIF 376

Query: 121 -----------DDILHIGNDVGHLTNIKRWLATQFRIKDLGNAQYVLGIQIVRNRKNKTQ 180
                      DDIL I NDVGHLT+IK+WLA QF++K LGNA YVL IQIVRNRKNKT 
Sbjct: 377 NSTVAFLVPYVDDILLIWNDVGHLTDIKQWLAMQFQMKYLGNAPYVLDIQIVRNRKNKTL 436

Query: 181 AISQTSYIDKMLSRYKMQNFKKGLLSYRYGIHLSKEQCPKTPQEVEDISNIPYASVFGSL 208
           A+SQTSYIDKMLSRYKMQN KK LL YRYGIHLSKEQCPKTPQEVED+SNIPYA   GSL
Sbjct: 437 AMSQTSYIDKMLSRYKMQNSKKCLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYAFAIGSL 496

[Close]
BLAST of MELO.jh013688.1 vs. ExPASy TrEMBL
Match: A0A5D3D523 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001800 PE=4 SV=1)

HSP 1 Score: 314 bits (804), Expect = 5.70e-97
Identity = 169/248 (68.15%), Postives = 184/248 (74.19%), Query Frame = 0 

Query: 1   MNDVDCDQWIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKAR 60
           MNDVDCDQWIKA+DL+M+ +YSN  WTLVDQ NDV PIGCKWIYKRKRDQAGKVQTFKA+
Sbjct: 450 MNDVDCDQWIKAIDLKMELMYSNIFWTLVDQQNDVNPIGCKWIYKRKRDQAGKVQTFKAQ 509

Query: 61  LVAKDGCQD----------------SFEILRRVS------IWS----NQR---------- 120
           LVAK   Q                 S  IL  ++      IW     N+R          
Sbjct: 510 LVAKGYTQKEGIYYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKNKRIINSTVAFLV 569

Query: 121 ---DDILHIGNDVGHLTNIKRWLATQFRIKDLGNAQYVLGIQIVRNRKNKTQAISQTSYI 180
              DDIL IGNDVGHLT+IK+WLATQF++KDLGNAQYVLGIQIVRNRKNKT A+SQTSYI
Sbjct: 570 LYVDDILLIGNDVGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVRNRKNKTLAMSQTSYI 629

Query: 181 DKMLSRYKMQNFKKGLLSYRYGIHLSKEQCPKTPQEVEDISNIPYASVFGSLMYAMLCIR 209
           DKMLSRYKM N KKGLLSYRYGIHLSKEQC KTPQEVED+SNIPYAS  GSLMYAML  R
Sbjct: 630 DKMLSRYKMHNSKKGLLSYRYGIHLSKEQCSKTPQEVEDMSNIPYASTVGSLMYAMLYTR 689

[Close]
BLAST of MELO.jh013688.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-07
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 0 

Query: 9   WIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAK 65
           W  AMD E+ ++ +   W +     + KPIGCKW+YK K +  G ++ +KARLVAK
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAK 153

[Close]
BLAST of MELO.jh013688.1 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 49.3 bits (116), Expect = 7.6e-06
Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = 0 

Query: 9  WIKAMDLEMKSIYSNSVWTLVDQSNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAK 65
          W +AM  E+ ++  N  W LV    +   +GCKW++K K    G +   KARLVAK
Sbjct: 40 WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAK 95

The following BLAST results are available for this feature:
BLAST of MELO.jh013688.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067819.11.35e-9869.01gag/pol protein [Cucumis melo var. makuwa][more]
TYK23767.12.51e-9866.27gag/pol protein [Cucumis melo var. makuwa][more]
TYJ97443.15.09e-9874.64gag/pol protein [Cucumis melo var. makuwa][more]
KAA0058854.15.96e-9766.27gag/pol protein [Cucumis melo var. makuwa][more]
KAA0064270.11.18e-9668.15gag/pol protein [Cucumis melo var. makuwa] >TYK18638.1 gag/pol protein [Cucumis ... [more]
BLAST of MELO.jh013688.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109783.0e-2342.86Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041462.5e-0930.77Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P925201.1e-0439.29Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9ZT944.1e-0438.98Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Q94HW26.9e-0437.29Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
BLAST of MELO.jh013688.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VRN66.55e-9969.01Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G002... [more]
A0A5D3DJL51.21e-9866.27Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G008... [more]
A0A5D3BDQ72.47e-9874.64Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold939G0017... [more]
A0A5A7UUR42.89e-9766.27Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00140... [more]
A0A5D3D5235.70e-9768.15Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0018... [more]
BLAST of MELO.jh013688.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G23160.11.4e-0742.86cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00820.17.6e-0639.29Reverse transcriptase (RNA-dependent DNA polymerase) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 23..67
e-value: 1.1E-8
score: 35.0
coord: 85..152
e-value: 5.7E-8
score: 32.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh013688.1.t1MELO.jh013688.1.t1mRNA