MELO.jh013293.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh013293.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTranscription factor bHLH36
Locationchr06: 14775626 .. 14775927 (-)
RNA-Seq ExpressionMELO.jh013293.1
SyntenyMELO.jh013293.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAGGCGTTGTTGAGTTAGGGAGAGAAAGGGAGAGACAAAGAAGACAAGAAATCAGTGCTATTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGGACTGTGCACAGGGAAAGAGATAAATGGAGGAAGAAGAAACGAAAAAGTAAAGATCAAGAACTCACAAGCGATGCTATGGGTCTCCTCGCCGTGGGTCTCTGTCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCATCATGCGTCGTTCGTCGTTCGTGA

mRNA sequence

ATGGACAAAGGCGTTGTTGAGTTAGGGAGAGAAAGGGAGAGACAAAGAAGACAAGAAATCAGTGCTATTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGGACTGTGCACAGGGAAAGAGATAAATGGAGGAAGAAGAAACGAAAAAGTAAAGATCAAGAACTCACAAGCGATGCTATGGGTCTCCTCGCCGTGGGTCTCTGTCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTTTCATCATGCGTCGTTCGTCGTTCGTGA

Coding sequence (CDS)

ATGGACAAAGGCGTTGTTGAGTTAGGGAGAGAAAGGGAGAGACAAAGAAGACAAGAAATCAGTGCTATTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAATTTGTGGGACTGTGCACAGGGAAAGAGATAAATGGAGGAAGAAGAAACGAAAAAGTAAAGATCAAGAACTCACAAGCGATGCTATGGGTCTCCTCGCCGTGGGTCTCTGTCAAGAAGAAAGGACGTGGAGATGA

Protein sequence

MDKGVVELGRERERQRRQEISAIYMSLRTLLPLEFIKVICGTVHRERDKWRKKKRKSKDQELTSDAMGLLAVGLCQEERTWR
Homology
BLAST of MELO.jh013293.1 vs. NCBI nr
Match: TYK30150.1 (transcription factor bHLH36 [Cucumis melo var. makuwa])

HSP 1 Score: 135 bits (341), Expect = 1.22e-39
Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEISAIYMSLRTLLPLEFIKVICGTVHRERDKWRKKKRKSKDQ 60
          MDKG+VELGRERERQRRQEI A+YMSLRTLLPLEFIKVI GT+HR RDKWR+KKRK KDQ
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKKDQ 60

Query: 61 ELTSDAMGLLAVGLC-QEERTWR 82
          ELT DAMGLLAVGL  QEE TWR
Sbjct: 61 ELTGDAMGLLAVGLRHQEEMTWR 83

BLAST of MELO.jh013293.1 vs. NCBI nr
Match: KAA0033316.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (291), Expect = 1.01e-31
Identity = 61/74 (82.43%), Postives = 64/74 (86.49%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEISAIYMSLRTLLPLEFIKVICGTVHRERDKWRKKKRKSKDQ 60
          MDK VVELGRERERQRRQEISA+YM LR LLPLEFIKVICGTVHR RDK R+KKRK KDQ
Sbjct: 1  MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKKRKKKDQ 60

Query: 61 ELTSDAMGLLAVGL 74
          ELT D +GL  VGL
Sbjct: 61 ELTGDDIGLFVVGL 74

BLAST of MELO.jh013293.1 vs. NCBI nr
Match: KAA0065871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (299), Expect = 1.33e-29
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEISAIYMSLRTLLPLEFIKVICGTVHRERDKWRKKKRKSKDQ 60
          MDKGVV+L RERERQRRQEI A+YM++RTLL LEFIKVICG VHRERDKWR+KKRK KDQ
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKKKDQ 60

Query: 61 ELTSDAMGLLAVGLCQEER 79
          EL  D MGLLAV L  E++
Sbjct: 61 ELIGDDMGLLAVDLLTEKK 79

BLAST of MELO.jh013293.1 vs. NCBI nr
Match: KAA0044825.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.46e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEISAIYMSLRTLLPLEFIKV 38
          MDKGVVELGRERERQRRQEISA+YMSLRTLLPLEFIKV
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV 43

BLAST of MELO.jh013293.1 vs. NCBI nr
Match: XP_022967981.1 (transcription factor bHLH118-like [Cucurbita maxima])

HSP 1 Score: 51.6 bits (122), Expect = 2.50e-05
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 10  RERERQRRQEISAIYMSLRTLLPLEFIK 37
           RERERQRRQE+ A+YMSLRTLLPLEFIK
Sbjct: 79  RERERQRRQEMGALYMSLRTLLPLEFIK 106

BLAST of MELO.jh013293.1 vs. ExPASy TrEMBL
Match: A0A5D3E3K5 (Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001340 PE=4 SV=1)

HSP 1 Score: 135 bits (341), Expect = 5.93e-40
Identity = 71/83 (85.54%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEISAIYMSLRTLLPLEFIKVICGTVHRERDKWRKKKRKSKDQ 60
          MDKG+VELGRERERQRRQEI A+YMSLRTLLPLEFIKVI GT+HR RDKWR+KKRK KDQ
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKKDQ 60

Query: 61 ELTSDAMGLLAVGLC-QEERTWR 82
          ELT DAMGLLAVGL  QEE TWR
Sbjct: 61 ELTGDAMGLLAVGLRHQEEMTWR 83

BLAST of MELO.jh013293.1 vs. ExPASy TrEMBL
Match: A0A5A7STJ5 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00940 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 4.89e-32
Identity = 61/74 (82.43%), Postives = 64/74 (86.49%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEISAIYMSLRTLLPLEFIKVICGTVHRERDKWRKKKRKSKDQ 60
          MDK VVELGRERERQRRQEISA+YM LR LLPLEFIKVICGTVHR RDK R+KKRK KDQ
Sbjct: 1  MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKKRKKKDQ 60

Query: 61 ELTSDAMGLLAVGL 74
          ELT D +GL  VGL
Sbjct: 61 ELTGDDIGLFVVGL 74

BLAST of MELO.jh013293.1 vs. ExPASy TrEMBL
Match: A0A5A7VJK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00020 PE=3 SV=1)

HSP 1 Score: 119 bits (299), Expect = 6.46e-30
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEISAIYMSLRTLLPLEFIKVICGTVHRERDKWRKKKRKSKDQ 60
          MDKGVV+L RERERQRRQEI A+YM++RTLL LEFIKVICG VHRERDKWR+KKRK KDQ
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKKKDQ 60

Query: 61 ELTSDAMGLLAVGLCQEER 79
          EL  D MGLLAV L  E++
Sbjct: 61 ELIGDDMGLLAVDLLTEKK 79

BLAST of MELO.jh013293.1 vs. ExPASy TrEMBL
Match: A0A5A7TTV0 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004670 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.08e-15
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MDKGVVELGRERERQRRQEISAIYMSLRTLLPLEFIKV 38
          MDKGVVELGRERERQRRQEISA+YMSLRTLLPLEFIKV
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV 43

BLAST of MELO.jh013293.1 vs. ExPASy TrEMBL
Match: A0A6J1HTL2 (transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111467355 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.21e-05
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 10  RERERQRRQEISAIYMSLRTLLPLEFIK 37
           RERERQRRQE+ A+YMSLRTLLPLEFIK
Sbjct: 79  RERERQRRQEMGALYMSLRTLLPLEFIK 106

BLAST of MELO.jh013293.1 vs. TAIR 10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.2e-04
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 10 RERERQRRQEISAIYMSLRTLLPLEFIKVICGT---VHRERDKWRKKKRKSKDQELTSDA 69
          RE ERQRRQE++++Y SLR+LLPL FIK    T   V+   +  +  +RK K+  +  D 
Sbjct: 7  RETERQRRQEMASLYASLRSLLPLHFIKGKRSTSDQVNEAVNYIKYLQRKIKELSVRRDD 66

Query: 70 MGLLAVG 74
          + +L+ G
Sbjct: 67 LMVLSRG 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK30150.11.22e-3985.54transcription factor bHLH36 [Cucumis melo var. makuwa][more]
KAA0033316.11.01e-3182.43transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcri... [more]
KAA0065871.11.33e-2977.22retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon p... [more]
KAA0044825.11.46e-1497.37transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcri... [more]
XP_022967981.12.50e-0589.29transcription factor bHLH118-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E3K55.93e-4085.54Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7STJ54.89e-3282.43Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7VJK96.46e-3077.22Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TTV07.08e-1597.37Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A6J1HTL21.21e-0589.29transcription factor bHLH118-like OS=Cucurbita maxima OX=3661 GN=LOC111467355 PE... [more]
Match NameE-valueIdentityDescription
AT5G51780.11.2e-0441.79basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 11..58
e-value: 4.6E-5
score: 23.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh013293.1.t1MELO.jh013293.1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity