MELO.jh012999.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh012999.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCore-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative isoform 2
Locationchr06: 10037760 .. 10037997 (+)
RNA-Seq ExpressionMELO.jh012999.1
SyntenyMELO.jh012999.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAAAAGGGAAGAAAACATACTTGATTGTGAGTGAAGAGCGCGAAAACAAGGAAAATGAGAAAGACGATCAAGAGAAGGAGGCATCGTGGTTGATACAACAAAGAGAAGTGGGCGGACGTCGTTGACTCGGTCGGACGTCGAAGCTTCAGCGGATGTTGAAGACGACGGCAGCGTTTTCGGATGTTGAAGATGACGACGACAGCAAATTGGAGAGGCATGGAAGACTTCGAGAAATTA

mRNA sequence

TCAAAAGGGAAGAAAACATACTTGATTGTGAGTGAAGAGCGCGAAAACAAGGAAAATGAGAAAGACGATCAAGAGAAGGAGGCATCGTGGTTGATACAACAAAGAGAAGTGGGCGGACGTCGTTGACTCGGTCGGACGTCGAAGCTTCAGCGGATGTTGAAGACGACGGCAGCGTTTTCGGATGTTGAAGATGACGACGACAGCAAATTGGAGAGGCATGGAAGACTTCGAGAAATTA

Coding sequence (CDS)

ATGTTGAAGACGACGGCAGCGTTTTCGGATGTTGAAGATGACGACGACAGCAAATTGGAGAGGCATGGAAGACTTCGAGAAATT

Protein sequence

MLKTTAAFSDVEDDDDSKLERHGRLREI
Homology
[Close]
BLAST of MELO.jh012999.1 vs. NCBI nr
Match: KAA0038930.1 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative isoform 2 [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 1.25e-08
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MLKTTAAFSDVEDDDDSKLERHGRLREI 28
          MLKTTAAFSDVEDDDDSKLERHGRLREI
Sbjct: 1  MLKTTAAFSDVEDDDDSKLERHGRLREI 28

[Close]
BLAST of MELO.jh012999.1 vs. ExPASy TrEMBL
Match: A0A5A7T6Q5 (Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, putative isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00010 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.06e-09
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 0 

Query: 1  MLKTTAAFSDVEDDDDSKLERHGRLREI 28
          MLKTTAAFSDVEDDDDSKLERHGRLREI
Sbjct: 1  MLKTTAAFSDVEDDDDSKLERHGRLREI 28

The following BLAST results are available for this feature:
BLAST of MELO.jh012999.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038930.11.25e-08100.00Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, puta... [more]
BLAST of MELO.jh012999.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh012999.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T6Q56.06e-09100.00Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein, puta... [more]
BLAST of MELO.jh012999.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 25..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh012999.1.t1MELO.jh012999.1.t1mRNA