MELO.jh012955.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh012955.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Zinc finger, CCHC-type
Location	chr06: 9502008 .. 9502362 (-)
RNA-Seq Expression	MELO.jh012955.1
Synteny	MELO.jh012955.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATATATATATATATATATATATATATATATATATATATATAGTATAATCTTTCTTTACTAACTCAAGAAGTGTATAAGTGTGAAGGACCCATGTCAAACCCCAAATTACAGGTTGAACAGTGAAGCTCACACTAACTCAAATGAAGAGGAAAATGAAACACATGCTGGAAATTCATGGGAGAACATTCAAAGTCAAACCAATAAAGAAGCAATCATTATGACTCAAGGCTCAATTACAAAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAGATTTTCAGTCTTCAATAAAGAGTTGGAACTTCAAGAGTCACTTGGACACCCAAGGGTCATAA

mRNA sequence

ATATATATATATATATATATATATATATATATATATATATATAGTATAATCTTTCTTTACTAACTCAAGAAGTGTATAAGTGTGAAGGACCCATGTCAAACCCCAAATTACAGGTTGAACAGTGAAGCTCACACTAACTCAAATGAAGAGGAAAATGAAACACATGCTGGAAATTCATGGGAGAACATTCAAAGTCAAACCAATAAAGAAGCAATCATTATGACTCAAGGCTCAATTACAAAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAGATTTTCAGTCTTCAATAAAGAGTTGGAACTTCAAGAGTCACTTGGACACCCAAGGGTCATAA

Coding sequence (CDS)

ATGACTCAAGGCTCAATTACAAAAGCTAGAGCTAAAAGACTTCAAGATGGATTAAATGCTTGTTTACAAGCTAGATTTTCAGTCTTCAATAAAGAGTTGGAACTTCAAGAGTCACTTGGACACCCAAGGGTCATA

Protein sequence

MTQGSITKARAKRLQDGLNACLQARFSVFNKELELQESLGHPRVI

Homology

[Close]

BLAST of MELO.jh012955.1 vs. NCBI nr
Match: TYK15114.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 3.53e-17
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1   MTQGSITKARAKRLQDGLNACLQARFSVFNKELELQESLGHPRVI 45
           MTQGS+TKARAKR +D LNACLQARFSVFNKELELQESLGHPR+I
Sbjct: 405 MTQGSMTKARAKRFRDELNACLQARFSVFNKELELQESLGHPRLI 449

[Close]

BLAST of MELO.jh012955.1 vs. NCBI nr
Match: KAA0065903.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 3.72e-17
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1   MTQGSITKARAKRLQDGLNACLQARFSVFNKELELQESLGHPRVI 45
           MTQGS+TKARAKR +D LNACLQARFSVFNKELELQESLGHPR+I
Sbjct: 441 MTQGSMTKARAKRFRDELNACLQARFSVFNKELELQESLGHPRLI 485

[Close]

BLAST of MELO.jh012955.1 vs. ExPASy TrEMBL
Match: A0A5D3CW05 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00430 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.71e-17
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1   MTQGSITKARAKRLQDGLNACLQARFSVFNKELELQESLGHPRVI 45
           MTQGS+TKARAKR +D LNACLQARFSVFNKELELQESLGHPR+I
Sbjct: 405 MTQGSMTKARAKRFRDELNACLQARFSVFNKELELQESLGHPRLI 449

[Close]

BLAST of MELO.jh012955.1 vs. ExPASy TrEMBL
Match: A0A5A7VCL9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00820 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.80e-17
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1   MTQGSITKARAKRLQDGLNACLQARFSVFNKELELQESLGHPRVI 45
           MTQGS+TKARAKR +D LNACLQARFSVFNKELELQESLGHPR+I
Sbjct: 441 MTQGSMTKARAKRFRDELNACLQARFSVFNKELELQESLGHPRLI 485

The following BLAST results are available for this feature:

BLAST of MELO.jh012955.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15114.1	3.53e-17	88.89	Zinc finger, CCHC-type [Cucumis melo var. makuwa]	[more]
KAA0065903.1	3.72e-17	88.89	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh012955.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh012955.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CW05	1.71e-17	88.89	Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A5A7VCL9	1.80e-17	88.89	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold53...	[more]

BLAST of MELO.jh012955.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh012955.1.t1	MELO.jh012955.1.t1	mRNA