MELO.jh010085.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh010085.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	60S ribosomal export protein NMD3
Location	chr05: 2360771 .. 2362361 (-)
RNA-Seq Expression	MELO.jh010085.1
Synteny	MELO.jh010085.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGTTCACCCACCCCTCCCTTTACCGGCCACCGCACCCCGTTACCGCCCTGGGCCGTTTCGGCGGCTGCCGCAATCCCAGCCTTCCGACGAGATATCCGCACCTCCCTCTCACACTCTCTCCGAGCAATCAGAGGTACTTATCTCTGATTTTTATTCTGAAGAACACATTCGTTCATCCCCTAACTCGTCGCTGCCGCTGCTCATTTTTCAGCTCCCAAGGTTTTATTCTTCATTCTGTTTCGTTGGGTTGTGTTTGTTCATTATCTGCACTGGTAGAAAACCAATAGTTTTTTCTTGTTGATTTCTTCTTCAACCAAGGTTCAACTAGTCTTCTTAATGAAGACATAAAACTAATCATATAGACCTCACAAATTAGGAAAAATGGAAACCAGATTAAATCAATGAAAATTATTTTATCTGAGCTGAGATTTCAAAAATTCGAAACTGCCTCCTTGTGGCGAGCTTACAGCCCAAAGTTTAAATTTTTGCCTAGATTTTCTTTTTTTCACTTTTTCTGGAAAGCTTTAGAATTCAACTTCTAGTGTTGGTTTGTTCATCTTTAGTATAAACTATGGCTGGAGGAGCAGGATTGTTTATGATTCAGCAGACTATTGGCAGTGTCTTATGTTGCAAATGTGGAATTCCCATTGCACCAAATGCTGCCAATATGTGTGTCAAGTACTTGTGTTCTGAAGTTGATATCACAGAAGGTTTGCAGAAACAATTATGAATAACTATTATGCATTTTCCACATTGTAAGAGTTACTCGCAGCCACCTCGAACTTGGATTAAAGCACGATTAGAATCAAAAGAACTATTAACACTGTATCAAAAGGTTAAAGAATCTGAATAAGTTAAAGCTGGTACTTGCTGAATTTGTTTGCACCAAACCCATTCCAACAGGATCGAGGTCAAATTGAAGGTTTAAAGAAGTTCGTCATGGAAATATTTTTGGAACAATGTTACATTGTTGAGTATATTACACCGGTTCACTTGTGTGAGTCCTGCTCAAGGGTCTAGGTTAACCCTGACCGAAGGCCGAAAGGTGGCTTGTGTTCTACTCAGGCAACGTCTCATGCCGATGTACTTCTTTCTTCATGGAGCAGTTGATACTCAAGCATGGTGCTGCTGCTCGTTCCACAAGAATCAAACAGATGAGTCAAGGTATTCGCTTCTTTTTCTGTAATAGGAGTGACGGTGTTAAGTTTGTGAAATTTATTGGCAAAGTTGCTCTGATTGAAAGTCGCCATGATAAACAATTTGTTTCTCATGATCTTAAGAGTAACATTCACAACCATAGGCATACCTTCTCTATTAAAATATCCCCAATATGTCTCGAGGATTTGATATGCTTGCCTCCAAAAGTTGCTTTTAATTTGGGAAATTCTGGTCCTCTTGTAATTTGCACTAAACTAATGAATGTGATTGCTTTACTTTGATCCATTCACCTTGAGGCACTGTTCTTGGATGCTGATCAGTAATGGAGGACGTCCTTTAAGTATACTTACTAGCAGTCAGCTTGTGGAATAAAGTTTTGTACCCTTATCCAAACGTTTTATAGTCTTTTTACTTCATCTCCTTTTACCTTTA

mRNA sequence

ACGTTCACCCACCCCTCCCTTTACCGGCCACCGCACCCCGTTACCGCCCTGGGCCGTTTCGGCGGCTGCCGCAATCCCAGCCTTCCGACGAGATATCCGCACCTCCCTCTCACACTCTCTCCGAGCAATCAGAGGTACTTATCTCTGATTTTTATTCTGAAGAACACATTCGTTCATCCCCTAACTCGTCGCTGCCGCTGCTCATTTTTCAGCTCCCAAGGTTTTATTCTTCATTCTGTTTCGTTGGGTTGTGTTTGTTCATTATCTGCACTGGTAGAAAACCAATAGTTTTTTCTTGTTGATTTCTTCTTCAACCAAGGTTCAACTAGTCTTCTTAATGAAGACATAAAACTAATCATATAGACCTCACAAATTAGGAAAAATGGAAACCAGATTAAATCAATGAAAATTATTTTATCTGAGCTGAGATTTCAAAAATTCGAAACTGCCTCCTTGTGGCGAGCTTACAGCCCAAAGTTTAAATTTTTGCCTAGATTTTCTTTTTTTCACTTTTTCTGGAAAGCTTTAGAATTCAACTTCTAGTGTTGGTTTGTTCATCTTTAGTATAAACTATGGCTGGAGGAGCAGGATTGTTTATGATTCAGCAGACTATTGGCAGTGTCTTATGTTGCAAATGTGGAATTCCCATTGCACCAAATGCTGCCAATATGTGTGTCAAGTACTTGTGTTCTGAAGTTGATATCACAGAAGGTTTGCAGAAACAATTATGAATAACTATTATGCATTTTCCACATTGTAAGAGTTACTCGCAGCCACCTCGAACTTGGATTAAAGCACGATTAGAATCAAAAGAACTATTAACACTGTATCAAAAGGTTAAAGAATCTGAATAAGTTAAAGCTGGTACTTGCTGAATTTGTTTGCACCAAACCCATTCCAACAGGATCGAGGTCAAATTGAAGGTTTAAAGAAGTTCGTCATGGAAATATTTTTGGAACAATGTTACATTGTTGAGTATATTACACCGGTTCACTTGTGTGAGTCCTGCTCAAGGGTCTAGGTTAACCCTGACCGAAGGCCGAAAGGTGGCTTGTGTTCTACTCAGGCAACGTCTCATGCCGATGTACTTCTTTCTTCATGGAGCAGTTGATACTCAAGCATGGTGCTGCTGCTCGTTCCACAAGAATCAAACAGATGAGTCAAGGTATTCGCTTCTTTTTCTGTAATAGGAGTGACGGTGTTAAGTTTGTGAAATTTATTGGCAAAGTTGCTCTGATTGAAAGTCGCCATGATAAACAATTTGTTTCTCATGATCTTAAGAGTAACATTCACAACCATAGGCATACCTTCTCTATTAAAATATCCCCAATATGTCTCGAGGATTTGATATGCTTGCCTCCAAAAGTTGCTTTTAATTTGGGAAATTCTGGTCCTCTTGTAATTTGCACTAAACTAATGAATGTGATTGCTTTACTTTGATCCATTCACCTTGAGGCACTGTTCTTGGATGCTGATCAGTAATGGAGGACGTCCTTTAAGTATACTTACTAGCAGTCAGCTTGTGGAATAAAGTTTTGTACCCTTATCCAAACGTTTTATAGTCTTTTTACTTCATCTCCTTTTACCTTTA

Coding sequence (CDS)

ATGGAGCAGTTGATACTCAAGCATGGTGCTGCTGCTCGTTCCACAAGAATCAAACAGATGAGTCAAGGTATTCGCTTCTTTTTCTGTAATAGGAGTGACGGTGTTAAGTTTGTGAAATTTATTGGCAAAGTTGCTCTGATTGAAAGTCGCCATGATAAACAATTTGTTTCTCATGATCTTAAGAGTAACATTCACAACCATAGGCATACCTTCTCTATTAAAATATCCCCAATATGTCTCGAGGATTTGATATGCTTGCCTCCAAAAGTTGCTTTTAATTTGGGAAATTCTGGTCCTCTTGTAATTTGCACTAAACTAATGAATGTGATTGCTTTACTTTGA

Protein sequence

MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDLKSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL

Homology

[Close]

BLAST of MELO.jh010085.1 vs. NCBI nr
Match: KAA0061671.1 (60S ribosomal export protein NMD3 [Cucumis melo var. makuwa] >TYK21146.1 60S ribosomal export protein NMD3 [Cucumis melo var. makuwa])

HSP 1 Score: 220 bits (561), Expect = 5.37e-71
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           MEQLILKHGAAARSTRIKQMSQGIRFFFCNRS GVKFVKFIGKVALIESRHDKQFVSHDL
Sbjct: 58  MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSYGVKFVKFIGKVALIESRHDKQFVSHDL 117

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 113
           KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGN GPLVICTKLMNVIALL
Sbjct: 118 KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNFGPLVICTKLMNVIALL 170

[Close]

BLAST of MELO.jh010085.1 vs. NCBI nr
Match: KAA0036240.1 (60S ribosomal export protein NMD3 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (455), Expect = 1.52e-51
Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQLILKHGAAA + RIKQM QGI FFF NRS GVKFV+F+GKVA I SRHDKQ VSHD 
Sbjct: 174 LEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDP 233

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 113
           KSNIHNH+HTFS++ISPIC EDLICLPPKVA +LGN GPLVICTK+ N IALL
Sbjct: 234 KSNIHNHKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL 286

[Close]

BLAST of MELO.jh010085.1 vs. NCBI nr
Match: XP_004143504.1 (60S ribosomal export protein NMD3 [Cucumis sativus] >KGN48818.1 hypothetical protein Csa_003669 [Cucumis sativus])

HSP 1 Score: 179 bits (455), Expect = 1.52e-51
Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQLILKHGAAA + RIKQM QGI FFF NRS GVKFV+F+GKVA I SRHDKQ VSHD 
Sbjct: 174 LEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDP 233

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 113
           KSNIHNH+HTFS++ISPIC EDLICLPPKVA +LGN GPLVICTK+ N IALL
Sbjct: 234 KSNIHNHKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL 286

[Close]

BLAST of MELO.jh010085.1 vs. NCBI nr
Match: XP_008440695.1 (PREDICTED: 60S ribosomal export protein NMD3 [Cucumis melo] >TYK12635.1 60S ribosomal export protein NMD3 [Cucumis melo var. makuwa])

HSP 1 Score: 179 bits (455), Expect = 1.52e-51
Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQLILKHGAAA + RIKQM QGI FFF NRS GVKFV+F+GKVA I SRHDKQ VSHD 
Sbjct: 174 LEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDP 233

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 113
           KSNIHNH+HTFS++ISPIC EDLICLPPKVA +LGN GPLVICTK+ N IALL
Sbjct: 234 KSNIHNHKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL 286

[Close]

BLAST of MELO.jh010085.1 vs. NCBI nr
Match: XP_038883908.1 (60S ribosomal export protein NMD3 isoform X2 [Benincasa hispida] >XP_038883909.1 60S ribosomal export protein NMD3 isoform X2 [Benincasa hispida])

HSP 1 Score: 179 bits (453), Expect = 3.00e-51
Identity = 89/113 (78.76%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQLILKHGAAA + RIKQM QGI FFF NRS GVKFV+FIGKV  I SRHDKQ VSHD 
Sbjct: 174 LEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFIGKVVSIRSRHDKQLVSHDP 233

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 113
           KSNIHNH+HTFS++ISPIC EDLICLPPKVA +LGN GPLVICTK+ N IALL
Sbjct: 234 KSNIHNHKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL 286

[Close]

BLAST of MELO.jh010085.1 vs. ExPASy Swiss-Prot
Match: Q55BF2 (60S ribosomal export protein NMD3 OS=Dictyostelium discoideum OX=44689 GN=nmd3 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-24
Identity = 49/110 (44.55%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQLILKH A +++  IK+   G+ FFF NR+  +KFV+FI  +  ++++  +Q +S D 
Sbjct: 168 IEQLILKHNAHSQTLNIKEKPDGLDFFFSNRNHAMKFVEFISAITPVKTKKSEQLISSDE 227

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVI 111
           ++N  N+++TFS++I P+  +D++CLPPK+A  LGN GPLV+ TK+ N+I
Sbjct: 228 QNNAANYKYTFSVEIVPLSKDDIVCLPPKIAHQLGNMGPLVVVTKVSNLI 277

[Close]

BLAST of MELO.jh010085.1 vs. ExPASy Swiss-Prot
Match: Q09817 (60S ribosomal export protein nmd3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nmd3 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-19
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQ+ILKH A   +  IK+   GI F+F  R+  +K V+F+  V  I  +  ++ +S D 
Sbjct: 178 LEQIILKHKAHMNTVNIKETKDGIDFYFGQRAHAIKMVEFLSAVVPIRYKGSEELISEDF 237

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 114
           KSN  N++ T+SI+I PIC +DL+CLP  VA   GN   LV+CTK+   I  L
Sbjct: 238 KSNTANYKFTYSIEIVPICKDDLVCLPKTVAKAHGNIAQLVVCTKVGPTIRFL 290

[Close]

BLAST of MELO.jh010085.1 vs. ExPASy Swiss-Prot
Match: Q5BLF0 (60S ribosomal export protein NMD3 OS=Danio rerio OX=7955 GN=nmd3 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-18
Identity = 40/113 (35.40%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQLILKH     + RIK++ +GI F++  +    K V F+       S+  ++ +SHD+
Sbjct: 172 LEQLILKHKLHQNTVRIKEIHEGIDFYYATKQHAQKMVDFLQCTVPCRSKASQRLISHDV 231

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 114
            SN +N++ TFS++I P+C ++++CL P++A +LGN G + +C ++ + I L+
Sbjct: 232 HSNTYNYKSTFSVEIVPVCKDNVVCLSPRLAQSLGNMGQVCVCVRVTSSIHLI 284

[Close]

BLAST of MELO.jh010085.1 vs. ExPASy Swiss-Prot
Match: Q6GNS3 (60S ribosomal export protein NMD3 OS=Xenopus laevis OX=8355 GN=nmd3 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-17
Identity = 38/113 (33.63%), Postives = 72/113 (63.72%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQ ILKH     + R+K++  G+ F++ ++  G K V+F+        +  ++ +SHD+
Sbjct: 172 LEQTILKHRLHQNTLRVKEIHDGLDFYYASKQHGQKMVEFLQCTVPCRFKASQRLISHDI 231

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 114
            +N +N++ TFS++I P+C ++L+CL PK+A +LGN   + IC ++ + I L+
Sbjct: 232 HTNAYNYKSTFSVEIVPVCKDNLVCLSPKLAQSLGNMNQICICARVTSTIHLI 284

[Close]

BLAST of MELO.jh010085.1 vs. ExPASy Swiss-Prot
Match: Q99L48 (60S ribosomal export protein NMD3 OS=Mus musculus OX=10090 GN=Nmd3 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-17
Identity = 39/113 (34.51%), Postives = 73/113 (64.60%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQLILK+G    + RIK++  G+ F++ ++    K V+F+  +     +  ++ +S D+
Sbjct: 172 LEQLILKYGMHQNTLRIKEIHDGLDFYYSSKQHAQKMVEFLQGIVPCRYKASQRLISQDI 231

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 114
            SN +N++ TFS++I PIC ++++CL PK+A +LGN   + IC ++ + I L+
Sbjct: 232 HSNTYNYKSTFSVEIVPICKDNVVCLSPKLAQSLGNMSQICICIRVTSAIHLI 284

[Close]

BLAST of MELO.jh010085.1 vs. ExPASy TrEMBL
Match: A0A5D3DC61 (60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00140 PE=3 SV=1)

HSP 1 Score: 220 bits (561), Expect = 2.60e-71
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           MEQLILKHGAAARSTRIKQMSQGIRFFFCNRS GVKFVKFIGKVALIESRHDKQFVSHDL
Sbjct: 58  MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSYGVKFVKFIGKVALIESRHDKQFVSHDL 117

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 113
           KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGN GPLVICTKLMNVIALL
Sbjct: 118 KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNFGPLVICTKLMNVIALL 170

[Close]

BLAST of MELO.jh010085.1 vs. ExPASy TrEMBL
Match: A0A5D3CM67 (60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002220 PE=3 SV=1)

HSP 1 Score: 179 bits (455), Expect = 7.37e-52
Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQLILKHGAAA + RIKQM QGI FFF NRS GVKFV+F+GKVA I SRHDKQ VSHD 
Sbjct: 174 LEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDP 233

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 113
           KSNIHNH+HTFS++ISPIC EDLICLPPKVA +LGN GPLVICTK+ N IALL
Sbjct: 234 KSNIHNHKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL 286

[Close]

BLAST of MELO.jh010085.1 vs. ExPASy TrEMBL
Match: A0A5A7SYS9 (60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18G00380 PE=3 SV=1)

HSP 1 Score: 179 bits (455), Expect = 7.37e-52
Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQLILKHGAAA + RIKQM QGI FFF NRS GVKFV+F+GKVA I SRHDKQ VSHD 
Sbjct: 174 LEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDP 233

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 113
           KSNIHNH+HTFS++ISPIC EDLICLPPKVA +LGN GPLVICTK+ N IALL
Sbjct: 234 KSNIHNHKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL 286

[Close]

BLAST of MELO.jh010085.1 vs. ExPASy TrEMBL
Match: A0A0A0KGY6 (60S ribosomal export protein NMD3 OS=Cucumis sativus OX=3659 GN=Csa_6G502070 PE=3 SV=1)

HSP 1 Score: 179 bits (455), Expect = 7.37e-52
Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQLILKHGAAA + RIKQM QGI FFF NRS GVKFV+F+GKVA I SRHDKQ VSHD 
Sbjct: 174 LEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDP 233

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 113
           KSNIHNH+HTFS++ISPIC EDLICLPPKVA +LGN GPLVICTK+ N IALL
Sbjct: 234 KSNIHNHKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL 286

[Close]

BLAST of MELO.jh010085.1 vs. ExPASy TrEMBL
Match: A0A1S3B197 (60S ribosomal export protein NMD3 OS=Cucumis melo OX=3656 GN=LOC103485035 PE=3 SV=1)

HSP 1 Score: 179 bits (455), Expect = 7.37e-52
Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQLILKHGAAA + RIKQM QGI FFF NRS GVKFV+F+GKVA I SRHDKQ VSHD 
Sbjct: 174 LEQLILKHGAAASAIRIKQMDQGIDFFFSNRSHGVKFVEFVGKVAPIRSRHDKQLVSHDP 233

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 113
           KSNIHNH+HTFS++ISPIC EDLICLPPKVA +LGN GPLVICTK+ N IALL
Sbjct: 234 KSNIHNHKHTFSVEISPICREDLICLPPKVAVSLGNLGPLVICTKVTNAIALL 286

[Close]

BLAST of MELO.jh010085.1 vs. TAIR 10
Match: AT2G03820.1 (nonsense-mediated mRNA decay NMD3 family protein )

HSP 1 Score: 137.9 bits (346), Expect = 5.1e-33
Identity = 65/113 (57.52%), Postives = 89/113 (78.76%), Query Frame = 0


Query: 1   MEQLILKHGAAARSTRIKQMSQGIRFFFCNRSDGVKFVKFIGKVALIESRHDKQFVSHDL 60
           +EQLIL+H AA+R+ RI+Q+ QGI FFF N+S    FV+F+ KV  IE R D+Q VSHD+
Sbjct: 176 LEQLILRHDAASRAIRIQQVDQGIDFFFGNKSHANSFVEFLRKVVPIEYRQDQQLVSHDV 235

Query: 61  KSNIHNHRHTFSIKISPICLEDLICLPPKVAFNLGNSGPLVICTKLMNVIALL 114
           KS+++N+++T+S+KI P+C EDL+CLP KVA  LGN GPLV+CTK+ + I LL
Sbjct: 236 KSSLYNYKYTYSVKICPVCREDLVCLPSKVASGLGNLGPLVVCTKVSDNITLL 288

The following BLAST results are available for this feature:

BLAST of MELO.jh010085.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061671.1	5.37e-71	98.23	60S ribosomal export protein NMD3 [Cucumis melo var. makuwa] >TYK21146.1 60S rib...	[more]
KAA0036240.1	1.52e-51	78.76	60S ribosomal export protein NMD3 [Cucumis melo var. makuwa]	[more]
XP_004143504.1	1.52e-51	78.76	60S ribosomal export protein NMD3 [Cucumis sativus] >KGN48818.1 hypothetical pro...	[more]
XP_008440695.1	1.52e-51	78.76	PREDICTED: 60S ribosomal export protein NMD3 [Cucumis melo] >TYK12635.1 60S ribo...	[more]
XP_038883908.1	3.00e-51	78.76	60S ribosomal export protein NMD3 isoform X2 [Benincasa hispida] >XP_038883909.1...	[more]

BLAST of MELO.jh010085.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55BF2	1.9e-24	44.55	60S ribosomal export protein NMD3 OS=Dictyostelium discoideum OX=44689 GN=nmd3 P...	[more]
Q09817	2.4e-19	42.48	60S ribosomal export protein nmd3 OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]
Q5BLF0	2.6e-18	35.40	60S ribosomal export protein NMD3 OS=Danio rerio OX=7955 GN=nmd3 PE=2 SV=1	[more]
Q6GNS3	1.3e-17	33.63	60S ribosomal export protein NMD3 OS=Xenopus laevis OX=8355 GN=nmd3 PE=2 SV=1	[more]
Q99L48	2.9e-17	34.51	60S ribosomal export protein NMD3 OS=Mus musculus OX=10090 GN=Nmd3 PE=1 SV=1	[more]

BLAST of MELO.jh010085.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DC61	2.60e-71	98.23	60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CM67	7.37e-52	78.76	60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SYS9	7.37e-52	78.76	60S ribosomal export protein NMD3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A0A0KGY6	7.37e-52	78.76	60S ribosomal export protein NMD3 OS=Cucumis sativus OX=3659 GN=Csa_6G502070 PE=...	[more]
A0A1S3B197	7.37e-52	78.76	60S ribosomal export protein NMD3 OS=Cucumis melo OX=3656 GN=LOC103485035 PE=3 S...	[more]

BLAST of MELO.jh010085.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03820.1	5.1e-33	57.52	nonsense-mediated mRNA decay NMD3 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007064	Nmd3, N-terminal	PFAM	PF04981	NMD3	coord: 1..75 e-value: 7.9E-13 score: 48.4
IPR039768	Ribosomal export protein Nmd3	PANTHER	PTHR12746	NONSENSE-MEDIATED MRNA DECAY PROTEIN 3	coord: 1..113
None	No IPR available	PANTHER	PTHR12746:SF4	60S RIBOSOMAL EXPORT PROTEIN NMD3	coord: 1..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh010085.1.t1	MELO.jh010085.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0043023	ribosomal large subunit binding