MELO.jh009797.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh009797.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionarabinogalactan peptide 13-like
Locationchr05: 282471 .. 283054 (+)
RNA-Seq ExpressionMELO.jh009797.1
SyntenyMELO.jh009797.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTCTTCATCTTCTTCAATTCAATTGAATTCAACAAGACAAGAGCTGTATCATTCAGCAATGGAGGCAATCAAGTTGAAGCTGTTCCTGGTGCTGCTGCTGCTGGCCTTCGCTGCCACCAATGCCCAGCCTGCTGCTCCTGCTCCTGCTCCTGCCTCTGATGCTCCTCTCTTTTATCCTACTTTCCTTGCTTCTCTTTCTGCTCTTTTTTTTTCCTTCTTCCTTTAAACTTCTTCGCATTGCTTCTCTGATTGTATATCGTCTGCCATTTCATTATTTCTTCTAATGAACCTATATTCTTTCTTATAAATGCTGATGTGATTGTCTTAGCCTGAAAATAAACACCTTACCAATATTTTATTGTCGAATCGCCAAATCAAACATGAACTATTTACATTAGAAGATCAGGAGCATCCTCCATATGTTAGTTTCTAATCATTCAAATGCCTCGATGAAAATGGAGTGGTTGGGACAGAGTTTAACCTTTAAAGAACTCTTTACAAGGCTTATTATGTATGTATTCTATGTTTCTTCCCAGTGAGAATCTGGTACATTCAAATTTCAGAAGCAATTCGATACCCTCA

mRNA sequence

AACTCTTCATCTTCTTCAATTCAATTGAATTCAACAAGACAAGAGCTGTATCATTCAGCAATGGAGGCAATCAAGTTGAAGCTGTTCCTGGTGCTGCTGCTGCTGGCCTTCGCTGCCACCAATGCCCAGCCTGCTGCTCCTGCTCCTGCTCCTGCCTCTGATGCTCCTCTCTTTTATCCTACTTTCCTTGCTTCTCTTTCTGCTCTTTTTTTTTCCTTCTTCCTTTAAACTTCTTCGCATTGCTTCTCTGATTGTATATCGTCTGCCATTTCATTATTTCTTCTAATGAACCTATATTCTTTCTTATAAATGCTGATGTGATTGTCTTAGCCTGAAAATAAACACCTTACCAATATTTTATTGTCGAATCGCCAAATCAAACATGAACTATTTACATTAGAAGATCAGGAGCATCCTCCATATGTTAGTTTCTAATCATTCAAATGCCTCGATGAAAATGGAGTGGTTGGGACAGAGTTTAACCTTTAAAGAACTCTTTACAAGGCTTATTATGTATGTATTCTATGTTTCTTCCCAGTGAGAATCTGGTACATTCAAATTTCAGAAGCAATTCGATACCCTCA

Coding sequence (CDS)

ATGGAGGCAATCAAGTTGAAGCTGTTCCTGGTGCTGCTGCTGCTGGCCTTCGCTGCCACCAATGCCCAGCCTGCTGCTCCTGCTCCTGCTCCTGCCTCTGATGCTCCTCTCTTTTATCCTACTTTCCTTGCTTCTCTTTCTGCTCTTTTTTTTTCCTTCTTCCTTTAA

Protein sequence

MEAIKLKLFLVLLLLAFAATNAQPAAPAPAPASDAPLFYPTFLASLSALFFSFFL
Homology
BLAST of MELO.jh009797.1 vs. NCBI nr
Match: XP_022944304.1 (arabinogalactan peptide 13-like [Cucurbita moschata] >XP_022985687.1 arabinogalactan peptide 13-like [Cucurbita maxima])

HSP 1 Score: 79.3 bits (194), Expect = 5.55e-18
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 1  MEAIKLKLFLVLLLLAFAATNAQPAAP----APAPASDAPLFYPTFLASLSALFFSFFL 55
          MEAIKLKLFLV+LL+AFAAT AQPAAP    APAPASDAPLFYPTF ASLSAL F+FFL
Sbjct: 1  MEAIKLKLFLVMLLVAFAATTAQPAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL 59

BLAST of MELO.jh009797.1 vs. NCBI nr
Match: XP_023513159.1 (arabinogalactan peptide 14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.8 bits (190), Expect = 2.16e-17
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 0

Query: 1  MEAIKLKLFLVLLLLAFAATNAQPAAP--APAPASDAPLFYPTFLASLSALFFSFFL 55
          MEAIKLKL LV+LL+AFAAT AQPAAP  APAPASDAPLFYPTF ASLSAL F+FFL
Sbjct: 1  MEAIKLKLLLVMLLVAFAATTAQPAAPSEAPAPASDAPLFYPTFFASLSALVFAFFL 57

BLAST of MELO.jh009797.1 vs. NCBI nr
Match: KAG6570311.1 (hypothetical protein SDJN03_29226, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.9 bits (185), Expect = 1.06e-15
Identity = 48/59 (81.36%), Postives = 51/59 (86.44%), Query Frame = 0

Query: 1   MEAIKLKLFLVLLLLAFAATNAQPAAP----APAPASDAPLFYPTFLASLSALFFSFFL 55
           MEAIKLKLFLV+LL+AFAAT AQPAAP    APAPASDAPLF PTF ASLSAL F+FFL
Sbjct: 83  MEAIKLKLFLVMLLVAFAATTAQPAAPSEAPAPAPASDAPLFNPTFFASLSALVFAFFL 141

BLAST of MELO.jh009797.1 vs. NCBI nr
Match: XP_038902540.1 (arabinogalactan protein 13-like [Benincasa hispida])

HSP 1 Score: 72.0 bits (175), Expect = 4.40e-15
Identity = 47/59 (79.66%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 1  MEAIKLKLFLVLLLLAFAATNAQPA----APAPAPASDAPLFYPTFLASLSALFFSFFL 55
          MEAIKLKLFLVLLL+AFA T AQ A    APAPAPASDA LFYPTF ASLSAL F+FFL
Sbjct: 1  MEAIKLKLFLVLLLMAFAGTIAQSATPSEAPAPAPASDASLFYPTFFASLSALLFAFFL 59

BLAST of MELO.jh009797.1 vs. NCBI nr
Match: KAG6605834.1 (Arabinogalactan protein 14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 1.50e-09
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 0

Query: 1   MEAIKLKLFLVLLLL-AFAATNAQPAAP----APAPASDAPLFYPTFLASLSALFFSFFL 55
           MEA+KLKLFLVLL+L AFA T AQ AAP    APAPASDAPL Y +F ASLS L F++FL
Sbjct: 48  MEAMKLKLFLVLLVLVAFAGTMAQAAAPSEAPAPAPASDAPLIYSSFFASLSGLVFAYFL 107

BLAST of MELO.jh009797.1 vs. ExPASy TrEMBL
Match: A0A6J1J5K6 (arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111483668 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.69e-18
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 1  MEAIKLKLFLVLLLLAFAATNAQPAAP----APAPASDAPLFYPTFLASLSALFFSFFL 55
          MEAIKLKLFLV+LL+AFAAT AQPAAP    APAPASDAPLFYPTF ASLSAL F+FFL
Sbjct: 1  MEAIKLKLFLVMLLVAFAATTAQPAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL 59

BLAST of MELO.jh009797.1 vs. ExPASy TrEMBL
Match: A0A6J1FWG8 (arabinogalactan peptide 13-like OS=Cucurbita moschata OX=3662 GN=LOC111448787 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.69e-18
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 1  MEAIKLKLFLVLLLLAFAATNAQPAAP----APAPASDAPLFYPTFLASLSALFFSFFL 55
          MEAIKLKLFLV+LL+AFAAT AQPAAP    APAPASDAPLFYPTF ASLSAL F+FFL
Sbjct: 1  MEAIKLKLFLVMLLVAFAATTAQPAAPSEAPAPAPASDAPLFYPTFFASLSALVFAFFL 59

BLAST of MELO.jh009797.1 vs. ExPASy TrEMBL
Match: A0A438JV44 (Arabinogalactan peptide 14 OS=Vitis vinifera OX=29760 GN=AGP14_0 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.33e-08
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0

Query: 1  MEAIKLKLFLVLLLLAFAATNAQPAA----PAPAPASDAPLFYPTFLASLSALFFSFFL 55
          MEA+K+KLFL ++++  A +  QPAA    PAPAPASDA +F PTF ASL+AL F F L
Sbjct: 1  MEAMKMKLFLAVVMMILAVSAVQPAAAATAPAPAPASDAAIFVPTFFASLTALAFGFLL 59

BLAST of MELO.jh009797.1 vs. ExPASy TrEMBL
Match: F6GUN4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00440 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.33e-08
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 0

Query: 1  MEAIKLKLFLVLLLLAFAATNAQPAA----PAPAPASDAPLFYPTFLASLSALFFSFFL 55
          MEA+K+KLFL ++++  A +  QPAA    PAPAPASDA +F PTF ASL+AL F F L
Sbjct: 1  MEAMKMKLFLAVVMMILAVSAVQPAAAATAPAPAPASDAAIFVPTFFASLTALAFGFLL 59

BLAST of MELO.jh009797.1 vs. ExPASy TrEMBL
Match: A0A3N7EXB5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G220901 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.22e-05
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 1  MEAIKLKLFLVLLLLAFAATNAQPA----APAPAPASDAPLFYPTFLASLSALFFSFFL 55
          MEA+K+K+F VL+++  A +  Q A    APAP+P SDA +F PTFLAS  AL F FFL
Sbjct: 1  MEAMKMKVFAVLMVVLMAFSTMQKATAANAPAPSPTSDATIFVPTFLASFVALAFGFFL 59

BLAST of MELO.jh009797.1 vs. TAIR 10
Match: AT5G56540.1 (arabinogalactan protein 14 )

HSP 1 Score: 42.4 bits (98), Expect = 1.4e-04
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 0

Query: 1  MEAIKLKLFLVLLLLAFA-----ATNAQPAAPAPAPASDAPLFYPTFLASLSALFFSFF 55
          MEA+K+KL++V+L+   A      T A   APAP+P SDA  F PTF AS++ + F FF
Sbjct: 1  MEAMKMKLYVVVLVAVIAFSTVHQTVAAVDAPAPSPTSDASSFIPTFFASVAVMAFGFF 59

BLAST of MELO.jh009797.1 vs. TAIR 10
Match: AT4G26320.1 (arabinogalactan protein 13 )

HSP 1 Score: 41.2 bits (95), Expect = 3.1e-04
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 1  MEAIKLKLFLVLLLLAFAATNAQPA----APAPAPASDAPLFYPTFLASLSALFFSF 54
          MEA+K++LF+ +L+ A A +  Q A    APAP+P SDA L  P F AS++ L F F
Sbjct: 1  MEAMKMRLFVAVLVAAMAFSAVQQAAAVEAPAPSPTSDASLAIPAFFASVATLAFGF 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022944304.15.55e-1883.05arabinogalactan peptide 13-like [Cucurbita moschata] >XP_022985687.1 arabinogala... [more]
XP_023513159.12.16e-1784.21arabinogalactan peptide 14-like [Cucurbita pepo subsp. pepo][more]
KAG6570311.11.06e-1581.36hypothetical protein SDJN03_29226, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038902540.14.40e-1579.66arabinogalactan protein 13-like [Benincasa hispida][more]
KAG6605834.11.50e-0970.00Arabinogalactan protein 14, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1J5K62.69e-1883.05arabinogalactan peptide 13-like OS=Cucurbita maxima OX=3661 GN=LOC111483668 PE=3... [more]
A0A6J1FWG82.69e-1883.05arabinogalactan peptide 13-like OS=Cucurbita moschata OX=3662 GN=LOC111448787 PE... [more]
A0A438JV446.33e-0857.63Arabinogalactan peptide 14 OS=Vitis vinifera OX=29760 GN=AGP14_0 PE=3 SV=1[more]
F6GUN46.33e-0857.63Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00440 PE=3 SV=... [more]
A0A3N7EXB51.22e-0554.24Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G220901 PE=3 ... [more]
Match NameE-valueIdentityDescription
AT5G56540.11.4e-0447.46arabinogalactan protein 14 [more]
AT4G26320.13.1e-0447.37arabinogalactan protein 13 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh009797.1.t1MELO.jh009797.1.t1mRNA