MELO.jh009053.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh009053.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr04: 29351852 .. 29352726 (+)
RNA-Seq ExpressionMELO.jh009053.1
SyntenyMELO.jh009053.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCACCCCCTTCAACTTCATGTTTCCTTTTCCATACCCAAACTAAATACCCACCAAAAAGAAAAAACACCCCTTTCAATGGCAGCAACAATGGCGAATCTTGACGAGTCCTGACACCAGTTGTGTTGGCCACGGGTGGTGGTTCGATCCTTTTCTCCCGTCTCTTTCCATGGTGCAAACGATCGAGTGCGAAACGCTGTTTCAGACGTTTCCACTCTTATCGTTCCTTACAATAAAGAGGTTTTGTTTTTTCCTTCAAGAATTTTCTTCGATGTCTGCCCACAAAAAAACGTCGATGGAGGGCTTTGCCCATGTTTTTCTTAAGACCAAAATTCTCGTAGTTTGTTGGTTACGTAAATTTCACTATCGTTTTTCTAATTTGGTCAGATCTTCCGACGACGGTTTTGACGTAAGAGACAAGATTGAGAAGAGGCCGACGACATCATCTATATTTGATGGTAAATTATTGCGGTCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCACTGGTGGTGCCGCCGCTTCCTCCACCACCGTTGGCAGTTCTCGGGCTGCCGGTTTTGATATTGGGTGTTTTGTTGTTCTTGGCTTTCTCTTCTTCTCATCGGGTCCCTAACACTGTCATGATTATTTGCTGCTGAAGACGACGTTGTAATTAATCTGTAAATTTTGAATACTATACAGTGTTGATATATATATATATATCATATATTAACCATGCAGAGAGAACTATTGTACGTATCATCAAAAACTCTCTCTCTCTCTCTCTTTTTAATATGTTTGTGTTTTTGTGGATACAAATTTCGAAAATTTGGATGAATAGGTTTATTATGGGTATGATATTTGATTATGTTA

mRNA sequence

TTCACCCCCTTCAACTTCATGTTTCCTTTTCCATACCCAAACTAAATACCCACCAAAAAGAAAAAACACCCCTTTCAATGGCAGCAACAATGGCGAATCTTGACGAGTCCTGACACCAGTTGTGTTGGCCACGGGTGGTGGTTCGATCCTTTTCTCCCGTCTCTTTCCATGGTGCAAACGATCGAGTGCGAAACGCTGTTTCAGACGTTTCCACTCTTATCGTTCCTTACAATAAAGAGATCTTCCGACGACGGTTTTGACGTAAGAGACAAGATTGAGAAGAGGCCGACGACATCATCTATATTTGATGGTAAATTATTGCGGTCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCACTGGTGGTGCCGCCGCTTCCTCCACCACCGTTGGCAGTTCTCGGGCTGCCGGTTTTGATATTGGGTGTTTTGTTGTTCTTGGCTTTCTCTTCTTCTCATCGGGTCCCTAACACTGTCATGATTATTTGCTGCTGAAGACGACGTTGTAATTAATCTGTAAATTTTGAATACTATACAGTGTTGATATATATATATATATCATATATTAACCATGCAGAGAGAACTATTGTACGTATCATCAAAAACTCTCTCTCTCTCTCTCTTTTTAATATGTTTGTGTTTTTGTGGATACAAATTTCGAAAATTTGGATGAATAGGTTTATTATGGGTATGATATTTGATTATGTTA

Coding sequence (CDS)

ATGGTGCAAACGATCGAGTGCGAAACGCTGTTTCAGACGTTTCCACTCTTATCGTTCCTTACAATAAAGAGATCTTCCGACGACGGTTTTGACGTAAGAGACAAGATTGAGAAGAGGCCGACGACATCATCTATATTTGATGGTAAATTATTGCGGTCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCACTGGTGGTGCCGCCGCTTCCTCCACCACCGTTGGCAGTTCTCGGGCTGCCGGTTTTGATATTGGGTGTTTTGTTGTTCTTGGCTTTCTCTTCTTCTCATCGGGTCCCTAA

Protein sequence

MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFTCVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP
Homology
[Close]
BLAST of MELO.jh009053.1 vs. NCBI nr
Match: XP_008443266.1 (PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 uncharacterized protein E6C27_scaffold135G002710 [Cucumis melo var. makuwa] >TYK25526.1 uncharacterized protein E5676_scaffold352G006780 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (519), Expect = 4.68e-66
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60
           MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT
Sbjct: 1   MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60

Query: 61  CVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106
           CVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP
Sbjct: 61  CVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106

[Close]
BLAST of MELO.jh009053.1 vs. NCBI nr
Match: KAE8651183.1 (hypothetical protein Csa_002001, partial [Cucumis sativus])

HSP 1 Score: 103 bits (257), Expect = 1.66e-26
Identity = 63/87 (72.41%), Postives = 64/87 (73.56%), Query Frame = 0 

Query: 1  MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60
          MVQTIEC TLFQTFPL SFLT KRS DDGFDV  K         I+D     SKFSDGFT
Sbjct: 1  MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGK------RRGIYD-----SKFSDGFT 60

Query: 61 CVDSFFASVATGGAAASSTTVGSSRAA 87
           VDSFFASVATGGAAASS TVG SRAA
Sbjct: 61 SVDSFFASVATGGAAASSATVGDSRAA 76

[Close]
BLAST of MELO.jh009053.1 vs. ExPASy TrEMBL
Match: A0A5D3DPE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006780 PE=4 SV=1)

HSP 1 Score: 204 bits (519), Expect = 2.26e-66
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60
           MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT
Sbjct: 1   MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60

Query: 61  CVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106
           CVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP
Sbjct: 61  CVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106

[Close]
BLAST of MELO.jh009053.1 vs. ExPASy TrEMBL
Match: A0A1S3B754 (uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=4 SV=1)

HSP 1 Score: 204 bits (519), Expect = 2.26e-66
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60
           MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT
Sbjct: 1   MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60

Query: 61  CVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106
           CVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP
Sbjct: 61  CVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106

[Close]
BLAST of MELO.jh009053.1 vs. ExPASy TrEMBL
Match: A0A0A0LBQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 3.87e-40
Identity = 80/106 (75.47%), Postives = 82/106 (77.36%), Query Frame = 0 

Query: 1   MVQTIECETLFQTFPLLSFLTIKRSSDDGFDVRDKIEKRPTTSSIFDGKLLRSKFSDGFT 60
           MVQTIEC TLFQTFPL SFLT KRS DDGFDV  K         I+D     SKFSDGFT
Sbjct: 1   MVQTIECGTLFQTFPLSSFLTTKRSFDDGFDVGGK------RRGIYD-----SKFSDGFT 60

Query: 61  CVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSSGP 106
            VDSFFASVATGGAAASS TVG SRAAGFDIGCFVVLGFLFFS+ P
Sbjct: 61  SVDSFFASVATGGAAASSATVGDSRAAGFDIGCFVVLGFLFFSTDP 95

The following BLAST results are available for this feature:
BLAST of MELO.jh009053.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008443266.14.68e-66100.00PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 unc... [more]
KAE8651183.11.66e-2672.41hypothetical protein Csa_002001, partial [Cucumis sativus][more]
BLAST of MELO.jh009053.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh009053.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DPE02.26e-66100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B7542.26e-66100.00uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=... [more]
A0A0A0LBQ93.87e-4075.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1[more]
BLAST of MELO.jh009053.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh009053.1.t1MELO.jh009053.1.t1mRNA