MELO.jh008030.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh008030.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr04: 14830736 .. 14832025 (-)
RNA-Seq ExpressionMELO.jh008030.1
SyntenyMELO.jh008030.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTAAATCCTTTTGAAAGGTTTCCTATTTCTTCGGCCCATATCTCAGAGCTCTCTCATCGATCCACTCCCTCATGTCCCTCAGCACAATCTCCACATTCTCATCAGGCTCTCCTTGAATCAACGAATGGTACATCCCATCGTATAGCTTCAACGTCTTATCCACGCTCGCCGCCTTCTCATACAGTAATTGCGACGACGATGGGCACGTCACTCCGTCCGCCGTACCGTGCACCGTCAGGAACGGCGCTGTAACCTTAGAAAAATTATCCCTAATATACTGCGTTACCCTAACCAATTCCCTCATCGTCCCCACCCTAGGCGGTCCCGTGTACCTTCTAGGATTCGCCGCTATTATCTTCAATTTCTCCGGATCCTTAATCGCCTTTCCCACCATTTTATTGTCCGGCATGGCGGCCCAAGTGTCGGCGACGCCGAAGAGAAGGCCGTATAGGAAGAGTCGGAGCTTACTTGGTTTCATATTTTCTGGTATGACGAAGAGGGGAGCTGAAAAGATGAGGCCGGTCCAGGTGTCTGGATCTGACTGGAAGTACATGAGCATGGTGGCGGCGCCGCCCATGGATTCACCGAAGAGGAACGCTGGGAGGTGGCGGTAGGGCTCGCTACGGCGGGTGTGGAGGAAGAAGGAGAGGGATGCGGCGGCGATTTTGTCCATGTCGCCGAGGTAACAGCGGAGGCCATCGGAGCGGCCGTGGCCGAGGAGGTCAGCGGCGAAGACGGCATAGCCCCAGGAGGCGTAGGAGAGGCAAATTTTTTGGAACATCCAGCCGGTGTCGGAGCCGTAGCCGTGAGTCATGTAGACGGTGCCTTTGAGATCCGGTGAGTCAAGAGGGATGAAGCTTTGTGTGAAGAGCTTGCCATGGGGGGTTTCGAAGAAGGATTTGGTGTTGCGGACGCCTTGTGAAGCGTAGAATTCTTCCTCCGGTTGATCGCCCCAGAAGTTCAGTGGTGGCTCCGGTGGCATTTTCGCCGCTTGTGAGTTTGTGAGGGACGAAAGGGTAGTGGTTGTAATGTAATGTGGAGATGGGAAAGTGGTAGTAGGTGGGGAGGGCAAAATTGTAAATTCACGAACTTAATTTTATTGGGTTTGTTTTTTAATTTTCATTTTGTTGCTTTTTCTTAAAAAAAAAACTTTTTTTTTTTAAAGAAAATGGTAACTCAAAATATATACTTTATATTAGGCTCTTACGTTATCCTTTTATATCAATGTATCTATTTTCTTTTTAAGTTTTGAAAGTCTGAATCTTATTAAATATAGTTGTGATGTGTA

mRNA sequence

TCTTAAATCCTTTTGAAAGGTTTCCTATTTCTTCGGCCCATATCTCAGAGCTCTCTCATCGATCCACTCCCTCATGTCCCTCAGCACAATCTCCACATTCTCATCAGGCTCTCCTTGAATCAACGAATGGTACATCCCATCGTATAGCTTCAACGTCTTATCCACGCTCGCCGCCTTCTCATACAGTAATTGCGACGACGATGGGCACGTCACTCCGTCCGCCGTACCGTGCACCGTCAGGAACGGCGCTGTAACCTTAGAAAAATTATCCCTAATATACTGCGTTACCCTAACCAATTCCCTCATCGTCCCCACCCTAGGCGGTCCCGTGTACCTTCTAGGATTCGCCGCTATTATCTTCAATTTCTCCGGATCCTTAATCGCCTTTCCCACCATTTTATTGTCCGGCATGGCGGCCCAAGTGTCGGCGACGCCGAAGAGAAGGCCGTATAGGAAGAGTCGGAGCTTACTTGGTTTCATATTTTCTGGTATGACGAAGAGGGGAGCTGAAAAGATGAGGCCGGTCCAGGTGTCTGGATCTGACTGGAAGTACATGAGCATGGTGGCGGCGCCGCCCATGGATTCACCGAAGAGGAACGCTGGGAGGTGGCGGTAGGGCTCGCTACGGCGGGTGTGGAGGAAGAAGGAGAGGGATGCGGCGGCGATTTTGTCCATGTCGCCGAGGTAACAGCGGAGGCCATCGGAGCGGCCGTGGCCGAGGAGGTCAGCGGCGAAGACGGCATAGCCCCAGGAGGCGTAGGAGAGGCAAATTTTTTGGAACATCCAGCCGGTGTCGGAGCCGTAGCCGTGAGTCATGTAGACGGTGCCTTTGAGATCCGGTGAGTCAAGAGGGATGAAGCTTTGTGTGAAGAGCTTGCCATGGGGGGTTTCGAAGAAGGATTTGGTGTTGCGGACGCCTTGTGAAGCGTAGAATTCTTCCTCCGGTTGATCGCCCCAGAAGTTCAGTGGTGGCTCCGGTGGCATTTTCGCCGCTTGTGAGTTTGTGAGGGACGAAAGGGTAGTGGTTGTAATGTAATGTGGAGATGGGAAAGTGGTAGTAGGTGGGGAGGGCAAAATTGTAAATTCACGAACTTAATTTTATTGGGTTTGTTTTTTAATTTTCATTTTGTTGCTTTTTCTTAAAAAAAAAACTTTTTTTTTTTAAAGAAAATGGTAACTCAAAATATATACTTTATATTAGGCTCTTACGTTATCCTTTTATATCAATGTATCTATTTTCTTTTTAAGTTTTGAAAGTCTGAATCTTATTAAATATAGTTGTGATGTGTA

Coding sequence (CDS)

ATGGCGGCCCAAGTGTCGGCGACGCCGAAGAGAAGGCCGTATAGGAAGAGTCGGAGCTTACTTGGTTTCATATTTTCTGGTATGACGAAGAGGGGAGCTGAAAAGATGAGGCCGGTCCAGGTGTCTGGATCTGACTGGAAGTACATGAGCATGGTGGCGGCGCCGCCCATGGATTCACCGAAGAGGAACGCTGGGAGGTGGCGGTAG

Protein sequence

MAAQVSATPKRRPYRKSRSLLGFIFSGMTKRGAEKMRPVQVSGSDWKYMSMVAAPPMDSPKRNAGRWR
Homology
[Close]
BLAST of MELO.jh008030.1 vs. NCBI nr
Match: ONI21277.1 (hypothetical protein PRUPE_2G057400 [Prunus persica])

HSP 1 Score: 75.9 bits (185), Expect = 4.38e-16
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 28 MTKRGAEKMRPVQVSGSDWKYMSMVAAPPMDSPKRNAGRWR 68
          MTK GAEK+RPVQVSG DWKYMSMVAAPPMDSPKR AGR R
Sbjct: 1  MTKSGAEKIRPVQVSGWDWKYMSMVAAPPMDSPKRKAGRRR 41

[Close]
BLAST of MELO.jh008030.1 vs. NCBI nr
Match: CAA2627048.1 (unnamed protein product [Spirodela intermedia] >CAA7403117.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 67.0 bits (162), Expect = 9.21e-13
Identity = 34/43 (79.07%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 28 MTKRGAEKMRPVQVS----GSDWKYMSMVAAPPMDSPKRNAGR 66
          MTKRGAEKMRPVQ        DWKYMSMVAAPPMDSPKR AGR
Sbjct: 1  MTKRGAEKMRPVQGQPPGRSLDWKYMSMVAAPPMDSPKRKAGR 43

[Close]
BLAST of MELO.jh008030.1 vs. NCBI nr
Match: KAF1002818.1 (hypothetical protein AG4045_023679 [Apium graveolens])

HSP 1 Score: 55.5 bits (132), Expect = 6.39e-08
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 30 KRGAEKMRPVQVSGSDWKYMSMVAAPPMDSPKRNAGRWR 68
          K  AE + PV VSG DWKY+S+V APP+DSP + AGR R
Sbjct: 4  KSAAENISPVHVSGGDWKYISIVTAPPIDSPNKKAGRSR 42

[Close]
BLAST of MELO.jh008030.1 vs. NCBI nr
Match: KAF5776940.1 (hypothetical protein HanXRQr2_Chr12g0529861 [Helianthus annuus])

HSP 1 Score: 55.1 bits (131), Expect = 1.11e-07
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 19 SLLGFIFSGMTKRGAEKMRPVQVSGSDWKYMSMVAAPPMDSPKRNAG 65
          +L G I SG+TK G E ++P Q S SD KY+S+V APP+DSP +NAG
Sbjct: 30 TLDGTIASGITKSGDENIKPDQTSLSDCKYISIVIAPPIDSPNKNAG 76

[Close]
BLAST of MELO.jh008030.1 vs. ExPASy TrEMBL
Match: A0A251QBU7 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G057400 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.12e-16
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 28 MTKRGAEKMRPVQVSGSDWKYMSMVAAPPMDSPKRNAGRWR 68
          MTK GAEK+RPVQVSG DWKYMSMVAAPPMDSPKR AGR R
Sbjct: 1  MTKSGAEKIRPVQVSGWDWKYMSMVAAPPMDSPKRKAGRRR 41

[Close]
BLAST of MELO.jh008030.1 vs. ExPASy TrEMBL
Match: A0A7I8J7X5 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_09012727 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.46e-13
Identity = 34/43 (79.07%), Postives = 34/43 (79.07%), Query Frame = 0 

Query: 28 MTKRGAEKMRPVQVS----GSDWKYMSMVAAPPMDSPKRNAGR 66
          MTKRGAEKMRPVQ        DWKYMSMVAAPPMDSPKR AGR
Sbjct: 1  MTKRGAEKMRPVQGQPPGRSLDWKYMSMVAAPPMDSPKRKAGR 43

[Close]
BLAST of MELO.jh008030.1 vs. ExPASy TrEMBL
Match: A0A6L5BBE8 (Uncharacterized protein OS=Apium graveolens OX=4045 GN=AG4045_023679 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.10e-08
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 30 KRGAEKMRPVQVSGSDWKYMSMVAAPPMDSPKRNAGRWR 68
          K  AE + PV VSG DWKY+S+V APP+DSP + AGR R
Sbjct: 4  KSAAENISPVHVSGGDWKYISIVTAPPIDSPNKKAGRSR 42

The following BLAST results are available for this feature:
BLAST of MELO.jh008030.1 vs. NCBI nr
Match NameE-valueIdentityDescription
ONI21277.14.38e-1687.80hypothetical protein PRUPE_2G057400 [Prunus persica][more]
CAA2627048.19.21e-1379.07unnamed protein product [Spirodela intermedia] >CAA7403117.1 unnamed protein pro... [more]
KAF1002818.16.39e-0861.54hypothetical protein AG4045_023679 [Apium graveolens][more]
KAF5776940.11.11e-0757.45hypothetical protein HanXRQr2_Chr12g0529861 [Helianthus annuus][more]
BLAST of MELO.jh008030.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh008030.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A251QBU72.12e-1687.80Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G057400 PE=4 SV=1[more]
A0A7I8J7X54.46e-1379.07Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_09012727 PE=4 SV... [more]
A0A6L5BBE83.10e-0861.54Uncharacterized protein OS=Apium graveolens OX=4045 GN=AG4045_023679 PE=4 SV=1[more]
BLAST of MELO.jh008030.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh008030.1.t1MELO.jh008030.1.t1mRNA