MELO.jh007620.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh007620.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionABC transporter F family member 4
Locationchr04: 7263779 .. 7267553 (-)
RNA-Seq ExpressionMELO.jh007620.1
SyntenyMELO.jh007620.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAAAGCATAACTAAAATGTTATTAAAAAGAAAAAGAAAAGAAAAGCGGGAAAGATATATTTGGCAAAAAAACAATTTGGAGCCAAAACCTAGCTAAAAGCAGTACTCGATCATCTCTTCTCCTGTTGGCTCTCTTCTCTCCATCGTCTTCTCCATCATCTTCTCTTCTCTTCTCTTCTCGATAACTTAAATCTCCTACTTTGTCTTCTCTGTTCTCTTCAGTACATCACCTTCGTTTCCAAGCTCCATCTATTTCTTGATTTTGTCTTCTCTCTAGCTAGGTGTTCTCCCTTCTCCGGCTTCATCTACTTCCCAGCTAGACATTCTCTATTCTTCAGCTTCGTCTTCTCTCTGATTTCGTCTTATGTACAACTCTGTTCCTCTTCTCGCTTCTTCGTTCCTATCCGGCTTTCTGTTCCTTTGCTCTTCTCCGACTGCATCTCCCTTCTCTAGCTAGGCGTTCCTTTTCGACTCTTCGTTCTTCTTCTCCCTTCTCCAGCGCCCTGTTCCTCTTTCACCTTTGTTCTCTGGCTAAAGGTATGTATTTTTTTCTCTATTTATTGATGATTCTCCAGCAAGTCAAAATATGGCTCTGTCTCCTATCGATCTCCATCTCCCTTAAAATTAGGGTTTTCATCACCTGCTTATTGTTTTTGTTGATGCGTTTTTTTCTTTTCTTTTTTTCTTTTTGTTGCTGATGGATTGATTTAAAGAAAATCTAAAGGTTACCCACCCTCTTGAATTAGAGGTATAATTGACTCAGGTGAGTGTAGGTGAAGAAATTTATGCTTATTTGTTATTTTCTCTTTTTCTATTGAACATTAAAGGTATATTGACTTGGAGTTTTTCATTGAAACATCACAGATGCAAAGCTAGCTTGAACAGATGAAATTTGTCTATAGTATATTGTTTTCACTAGTGAATTGTCTGCTAAAACTTCATCATTTTGTACTGTGTTTGGTATTGCGAAGCATCTACCATTTCTTTCTATAGTGTGGTGCTAAATTGTTGTTGTCAATTCAATGGCTTCATTCATTGTTTGTTAAGCTTAGTTTGTTTATGTAAATTTAATGGCTTTCTTGACATCCTTACAATAGCTAAATTGAGATGTTAACTGTTCAAAGTATGACTTGGAGTGATGAAAGTTTGATCTAAAATTTATGATGTGATTAAAGTATTCCTTCATGATCTTTTTCTTCACTGAATTGTTACTTAGATGATTCGATGGTTAAAGTTTAGTGAGGTAGGTATATCTCCTTTCGATAGTTAAAATGATTTTAAACCTTATTCTTGTTGCAATATTCTTCGCATCAGATCGTGCAAATTACCGTGAAACCCAAAAACAAGAGACAAGTGGTAAAAGAAAGCAGAAGAAGATTGAAAATAGAAATTTCAAGGGAGGTTAAGAACAAGAAATTGGGTTGTCAAAAGAGGATTTGAATGAAAGAGTTGAAGCTTTCATTGTAATGTTAAAAAAGGGGGAAACAGGGGAATTAAATGAGGATGTTGTTCTGTTTGTTTTTCTTTTATTTGTTTGGTGACTTTCAAGAGTTTTAAAAATGTAATCTTGAACCATGAATTTTGGAATATGCGGCCATGATTTTTGTATAAATTCAAATTTTAACTTTCTTTATGCTCTCTTGTTCTTTTATATATAAAACTGAAGGTGGTGTTAAGTATTTTTTTTTTTTTTTTGTATAAATATAATTGTAAGGACTATATCGGATGAAGATTGATTAAAGATCTTTTACAAATTTTTTAGGAAGTTTCATTCTTCCAATTCCAATCTCATATTCAAGGTAATGTGTAAAATGTTTAGAACAAGAACTTATATACAAATGACAAAATATCGTTAAAGTCAATAGATGATTTACTGTTGGTAAATATCGTTAAAGTTAGTGAGTAGGTTTTAGAGAAAGGAGTGTTTAACTATACACATATATTCTTGTTTAATGTTTAATTGAATTAGATGTTAGTCGACATATGTAATGTAGGACATTATTGATACTATCGACATATGATACTTTTGTTGTGTTTTGATTGTAGCCATGTCCCTCAATTATAACTTGCATCGACTTGGATCTAGAAACTGAATCTCTTATCATTGGTCGCGCTGGATTGGTGACATTGAAGTTTGGGTTGAAGAATCTTTATCTTTTTCAAGCTCCTAGTTAAGGTAAGTTCTCAATTTCTCCAGCATTATTATTTTTTAAGGTTTATGGATTTTTATTTGTCCATAAATGTGAATATTTGCATATTATTGATTAAGATAATTTTTCTTTAGTCTTTGCTTATTTGCCATTGTTATGTTAGTTTTTTTTTAATGGTGATGGTGACTATTACTCTGTTGGTGTTAATGGTGATTATTACTTGGTTGGTTAATCTTTTGTATTCTTTATAGTGGTTACCATATTCTATAGTTTCTGTCATATTTTATAGTTGCTGTCATATTCTATAGATGGGTAACTACATCTTGTTGTGAATGTTGTTGTGAATGTCAACATCTTGATGTGAATGTTGTTGCTGCCATCTTTTATAGTTGCTGTCATTTTTATGTTTTGATCTCTTGTTAGGTTGCTGCCCCTTGAGTAGTGAGATTTAGTTGAAGTAGGTTTTAAATGTTGTGACATTCTTTAATGTCTTCTCCCCCCTAATGATCTTTTTTATATCCCATGCTTGTTTACTGTTGAGTATTGATTTGTAGTTGGGTTGTTGCCATTTGAGTATTGATTTCTTCAATTAAATGAGTTGGTTGATGAAATATGCTTAGATGCCACTTGTTTCGAGTATTGATTTGTAGTTGGATTTTAAATGACTGCCCATTATTGCTGCCCATGTTTTTAAATGCAGTTGGATTGTTTCCTTCAACTAAATGACTTGTTGTGACTGTTTCATGCCCCTCCACCCACCCACCCACCATGACTTTTGAATAGTTACTATGATTTTTTGTTAGGAGCGTATTGAACAAAATCGTATGGCTTCTTCGAGTAGTATAATTGATGATGCAATTAGTAAAGTTCTCAGTCCTAATCATGGCTATGCAAAAGGATTAGGATTTAGTGTGACTCTATCGAAGGTGTCTACATCCATTAACAAAGATAAAACCATTGCATCTCTTGAAAAAAAAATATGACAACCTAACGTCGGATGTACATGAGTTGAAAAGTGTGGTAGTTTCCTTACTAAAATACAAGGTAAATTTGTCTTAACACTCTTAAAAGTTCTTAAACTATGGTTATAGTACATTTTGACATTGTTTGTTTATATAGGAAAAAACAAGTTATGACAATTTTAATCATCTTGTTAGAAGAGTACCATCATCGACACATATTCGTACTCCTACTCCAATCATAAATGACCCACCGATAAATTCTAATCATCTTTGTTATTTTAAATTATTATTGTTTGAGATTTTTCTAACCATATTATTATTGAAAAAGAGTGTTACTACCAAGACTCCCCATAAGTGCTTGCTACTAGATTGGGTGTTCAGGAGAAGTCATTGTTGAAGGTAGATGGTCTTCCAATGATCCATCTGTTATTGATGATGTTGTGGGTACTATTGTAGCATGACCAATGGATAAAGTCAAACTATGTAAGAAATTTAATCCACTTTGTGAATTAGGTATTTATTAGTTCTTTAACTAATTTATTGTTAAAGTTAGATAATGATATTTCTTTTTATTTTTTTGTTAGGTGATTGATGTGTGGAGAAAACATTGGAGCAACACATATAGTTGGATAATAGAACTATTGCTACAATTTGAACA

mRNA sequence

ATGAAAAAAAGCATAACTAAAATGTTATTAAAAAGAAAAAGAAAAGAAAAGCGGGAAAGATATATTTGGCAAAAAAACAATTTGGAGCCAAAACCTAGCTAAAAGCAGTACTCGATCATCTCTTCTCCTGTTGGCTCTCTTCTCTCCATCGTCTTCTCCATCATCTTCTCTTCTCTTCTCTTCTCGATAACTTAAATCTCCTACTTTGTCTTCTCTGTTCTCTTCAGTACATCACCTTCGTTTCCAAGCTCCATCTATTTCTTGATTTTGTCTTCTCTCTAGCTAGGTGTTCTCCCTTCTCCGGCTTCATCTACTTCCCAGCTAGACATTCTCTATTCTTCAGCTTCGTCTTCTCTCTGATTTCGTCTTATGTACAACTCTGTTCCTCTTCTCGCTTCTTCGTTCCTATCCGGCTTTCTGTTCCTTTGCTCTTCTCCGACTGCATCTCCCTTCTCTAGCTAGGCGTTCCTTTTCGACTCTTCGTTCTTCTTCTCCCTTCTCCAGCGCCCTGTTCCTCTTTCACCTTTGTTCTCTGGCTAAAGGTATATCTCCTTTCGATAGTTAAAATGATTTTAAACCTTATTCTTGTTGCAATATTCTTCGCATCAGATCGTGCAAATTACCGTGAAACCCAAAAACAAGAGACAAGTGGTAAAAGAAAGCAGAAGAAGATTGAAAATAGAAATTTCAAGGGAGATTAACAAAGATAAAACCATTGCATCTCTTGAAAAAAAAATATGACAACCTAACGTCGGATGTACATGAGTTGAAAAGTGTGGTAGTTTCCTTACTAAAATACAAGTGCTTGCTACTAGATTGGGTGTTCAGGAGAAGTCATTGTTGAAGGTAGATGGTCTTCCAATGATCCATCTGTTATTGATGATGTTGTGGGTGATTGATGTGTGGAGAAAACATTGGAGCAACACATATAGTTGGATAATAGAACTATTGCTACAATTTGAACA

Coding sequence (CDS)

ATGATTTTAAACCTTATTCTTGTTGCAATATTCTTCGCATCAGATCGTGCAAATTACCGTGAAACCCAAAAACAAGAGACAAGTGGTAAAAGAAAGCAGAAGAAGATTGAAAATAGAAATTTCAAGGGAGATTAA

Protein sequence

MILNLILVAIFFASDRANYRETQKQETSGKRKQKKIENRNFKGD
Homology
[Close]
BLAST of MELO.jh007620.1 vs. NCBI nr
Match: XP_008458709.1 (PREDICTED: ABC transporter F family member 4 [Cucumis melo])

HSP 1 Score: 55.8 bits (133), Expect = 8.77e-08
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 3  LNLILVAIFFASDRANYRETQKQETSGKRKQKKIEN 38
          LNLILVAIFF S+ ANY ETQKQETSGK KQKK EN
Sbjct: 60 LNLILVAIFFTSNPANYSETQKQETSGKTKQKKTEN 95

[Close]
BLAST of MELO.jh007620.1 vs. NCBI nr
Match: XP_011655979.1 (uncharacterized protein LOC105435604 [Cucumis sativus] >KGN52422.1 hypothetical protein Csa_008314 [Cucumis sativus])

HSP 1 Score: 50.4 bits (119), Expect = 1.04e-05
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 1   MILNLILVAIFFASDRAN---YRETQKQETSGKRKQKKIENR 39
           ++LNLILVAIFF S+ AN   Y ETQKQETSGK K KKIE R
Sbjct: 59  LVLNLILVAIFFTSNPANPANYSETQKQETSGKTKLKKIEKR 100

[Close]
BLAST of MELO.jh007620.1 vs. ExPASy TrEMBL
Match: A0A1S3C9Q4 (ABC transporter F family member 4 OS=Cucumis melo OX=3656 GN=LOC103498035 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.25e-08
Identity = 30/36 (83.33%), Postives = 31/36 (86.11%), Query Frame = 0 

Query: 3  LNLILVAIFFASDRANYRETQKQETSGKRKQKKIEN 38
          LNLILVAIFF S+ ANY ETQKQETSGK KQKK EN
Sbjct: 60 LNLILVAIFFTSNPANYSETQKQETSGKTKQKKTEN 95

[Close]
BLAST of MELO.jh007620.1 vs. ExPASy TrEMBL
Match: A0A0A0KVE3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633200 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.02e-06
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 1   MILNLILVAIFFASDRAN---YRETQKQETSGKRKQKKIENR 39
           ++LNLILVAIFF S+ AN   Y ETQKQETSGK K KKIE R
Sbjct: 59  LVLNLILVAIFFTSNPANPANYSETQKQETSGKTKLKKIEKR 100

The following BLAST results are available for this feature:
BLAST of MELO.jh007620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008458709.18.77e-0883.33PREDICTED: ABC transporter F family member 4 [Cucumis melo][more]
XP_011655979.11.04e-0571.43uncharacterized protein LOC105435604 [Cucumis sativus] >KGN52422.1 hypothetical ... [more]
BLAST of MELO.jh007620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh007620.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C9Q44.25e-0883.33ABC transporter F family member 4 OS=Cucumis melo OX=3656 GN=LOC103498035 PE=4 S... [more]
A0A0A0KVE35.02e-0671.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G633200 PE=4 SV=1[more]
BLAST of MELO.jh007620.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh007620.1.t1MELO.jh007620.1.t1mRNA