MELO.jh007461.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh007461.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Girdin-like
Location	chr04: 4023507 .. 4024580 (+)
RNA-Seq Expression	MELO.jh007461.1
Synteny	MELO.jh007461.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGTGTTAACTATAAACCATTGTTAGTTTTGCGTCACATGTGACTCAAACAATTTATACCACCAACTCATAATCTACAAGAGTCTGACTTTTCATACAATCTTGAAGATTGTCAAGGAAAAAAATGTTGAGCAGTACGCGTAGGGAGGAAGATAAAAGACGAAGGACACTACGAAGGAGTTACTAGTGGATACGAGGCATGACAGGCAAACAGAAGGAAGAATGTAATAGTTACCTTAAGGGACGTAGTTGAAAGGGTAAAAGAGACGATCTTTGAACAAGCAAATTAGTGGGTTGAGAAGAGCATAGAATTAGAAGAGAAAAATCGATTGTTAGAACAAAAGAACAAGAAACTTTGTAAAGAGATAAGTTAATGGATGGATCATGCGACTTATTTGCAAAAAGAACTCTAAAAGATCAAGAATTTCTTAAGAAAACAAGATAAGTTAGAAAAGAATCTTGAGGCGTTAGATAAGAAGATGAGGCGAATGAATAAAGCAAAAAAAATCTTGAAAAATGAAAGGACAACATTACAGGCAACAATGAAGTCGTAAGATGAATATATTAAAGATTTAAAAAGTGGGAATGAGTATTTTATCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAATGAGAAACATATATAATAGATTTGGAAGCATACAATCATTCTCTACATCAAACAGTTGATAGCCTACATGTGAAGATGGCCAAGAACTCTGAAGGGTATGAGATACTGAATAATTATGCTCATTCCTTACACTATTAACTTACTACATTTCAAAATTCAAATGAGAGGATAGTGTAGGAATATGAGTTATTGAAGACAGATTACATGCAAATGAAGGTTGATTATGATCTGCAAATGAGAGATTTCGAGGTGCTAGTGGAATGTGAAGATCAAATGGTTGAATTTCTCAGAATGGTGGTCAGAAGAGCAAATGGTTTTGAAAAATAGGCAACTAATTTTAGGGTTAATTGTTTCTCAATGCAACCTCATACAAATGATTTGAATAGATTCTTGAAGATGATATATAGAGAACTCAAAAATTTTGCTCGTTTTCATTAA

mRNA sequence

GGAGGTGTTAACTATAAACCATTGTTAGTTTTGCGTCACATGTGACTCAAACAATTTATACCACCAACTCATAATCTACAAGAGTCTGACTTTTCATACAATCTTGAAGATTGTCAAGGAAAAAAATGTTGAGCAGTACGCGTAGGGAGGAAGATAAAAGACGAAGGACACTACGAAGGAGTTACTAGTGGATACGAGGCATGACAGGCAAACAGAAGGAAGAATGTAATAGTTACCTTAAGGGACAAAGAACTCTAAAAGATCAAGAATTTCTTAAGAAAACAAGATAAGTTAGAAAAGAATCTTGAGGCGTTAGATAAGAAGATGAGGCGAATGAATAAAGCAAAAAAAATCTTGAAAAATGAAAGGACAACATTACAGGCAACAATGAAGTCGTAAGATGAATATATTAAAGATTTAAAAAGTGGGAATGAGTATTTTATCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAATGAGAAACATATATAATAGATTTGGAAGCATACAATCATTCTCTACATCAAACAGTTGATAGCCTACATGTGAAGATGGCCAAGAACTCTGAAGGGTATGAGATACTGAATAATTATGCTCATTCCTTACACTATTAACTTACTACATTTCAAAATTCAAATGAGAGGATAGTGTAGGAATATGAGTTATTGAAGACAGATTACATGCAAATGAAGGTTGATTATGATCTGCAAATGAGAGATTTCGAGGTGCTAGTGGAATGTGAAGATCAAATGGTTGAATTTCTCAGAATGGTGGTCAGAAGAGCAAATGGTTTTGAAAAATAGGCAACTAATTTTAGGGTTAATTGTTTCTCAATGCAACCTCATACAAATGATTTGAATAGATTCTTGAAGATGATATATAGAGAACTCAAAAATTTTGCTCGTTTTCATTAA

Coding sequence (CDS)

ATGCAAATGAAGGTTGATTATGATCTGCAAATGAGAGATTTCGAGGTGCTAGTGGAATGTGAAGATCAAATGGTTGAATTTCTCAGAATGGTGGTCAGAAGAGCAAATGGTTTTGAAAAATAG

Protein sequence

MQMKVDYDLQMRDFEVLVECEDQMVEFLRMVVRRANGFEK

Homology

[Close]

BLAST of MELO.jh007461.1 vs. NCBI nr
Match: TYK04062.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 2.86e-10
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 2   QMKVDYDLQMRDFEVLVECEDQMVEFLRMVVRRANGF 38
           QMKVDYDLQ RDF+VLVE  DQ +EFLRMV +RANGF
Sbjct: 65  QMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGF 101

[Close]

BLAST of MELO.jh007461.1 vs. NCBI nr
Match: KAA0036956.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.61e-09
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 2   QMKVDYDLQMRDFEVLVECEDQMVEFLRMVVRRANGF 38
           QMKVDYDL  RDF+VLVE  DQ +EFLRMV +RANGF
Sbjct: 65  QMKVDYDLHTRDFQVLVERVDQTIEFLRMVSKRANGF 101

[Close]

BLAST of MELO.jh007461.1 vs. NCBI nr
Match: KAA0037619.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.61e-09
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 2   QMKVDYDLQMRDFEVLVECEDQMVEFLRMVVRRANGF 38
           QMK+DYDL+ RDF+VLVE  DQ +EFLRMV +RANGF
Sbjct: 65  QMKIDYDLRTRDFQVLVERVDQTIEFLRMVSKRANGF 101

[Close]

BLAST of MELO.jh007461.1 vs. NCBI nr
Match: KAA0037780.1 (girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 2.01e-09
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 2   QMKVDYDLQMRDFEVLVECEDQMVEFLRMVVRRANGF 38
           QMKVDYDLQ RDF+VLVE  DQ +EFLRMV +RANGF
Sbjct: 257 QMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGF 293

[Close]

BLAST of MELO.jh007461.1 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 2.03e-09
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 2   QMKVDYDLQMRDFEVLVECEDQMVEFLRMVVRRANGF 38
           QMKVDYDLQ RDF+VLVE  DQ +EFLRMV +RANGF
Sbjct: 250 QMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGF 286

[Close]

BLAST of MELO.jh007461.1 vs. ExPASy TrEMBL
Match: A0A5D3BYW3 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.39e-10
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 2   QMKVDYDLQMRDFEVLVECEDQMVEFLRMVVRRANGF 38
           QMKVDYDLQ RDF+VLVE  DQ +EFLRMV +RANGF
Sbjct: 65  QMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGF 101

[Close]

BLAST of MELO.jh007461.1 vs. ExPASy TrEMBL
Match: A0A5A7T4A6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00360 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.78e-10
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 0


Query: 2   QMKVDYDLQMRDFEVLVECEDQMVEFLRMVVRRANGF 38
           QMKVDYDL  RDF+VLVE  DQ +EFLRMV +RANGF
Sbjct: 65  QMKVDYDLHTRDFQVLVERVDQTIEFLRMVSKRANGF 101

[Close]

BLAST of MELO.jh007461.1 vs. ExPASy TrEMBL
Match: A0A5A7T8J1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002800 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.78e-10
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 2   QMKVDYDLQMRDFEVLVECEDQMVEFLRMVVRRANGF 38
           QMK+DYDL+ RDF+VLVE  DQ +EFLRMV +RANGF
Sbjct: 65  QMKIDYDLRTRDFQVLVERVDQTIEFLRMVSKRANGF 101

[Close]

BLAST of MELO.jh007461.1 vs. ExPASy TrEMBL
Match: A0A5D3DUG2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.71e-10
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 2   QMKVDYDLQMRDFEVLVECEDQMVEFLRMVVRRANGF 38
           QMKVDYDLQ RDF+VLVE  DQ +EFLRMV +RANGF
Sbjct: 257 QMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGF 293

[Close]

BLAST of MELO.jh007461.1 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.82e-10
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 2   QMKVDYDLQMRDFEVLVECEDQMVEFLRMVVRRANGF 38
           QMKVDYDLQ RDF+VLVE  DQ +EFLRMV +RANGF
Sbjct: 250 QMKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGF 286

The following BLAST results are available for this feature:

BLAST of MELO.jh007461.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04062.1	2.86e-10	78.38	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0036956.1	1.61e-09	75.68	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0037619.1	1.61e-09	72.97	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0037780.1	2.01e-09	78.38	girdin-like [Cucumis melo var. makuwa] >TYK27303.1 girdin-like [Cucumis melo var...	[more]
TYK23632.1	2.03e-09	78.38	girdin-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh007461.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh007461.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYW3	1.39e-10	78.38	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 P...	[more]
A0A5A7T4A6	7.78e-10	75.68	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00360 PE=...	[more]
A0A5A7T8J1	7.78e-10	72.97	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002800 P...	[more]
A0A5D3DUG2	9.71e-10	78.38	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00160 P...	[more]
A0A5D3DJ95	9.82e-10	78.38	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P...	[more]

BLAST of MELO.jh007461.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh007461.1.t1	MELO.jh007461.1.t1	mRNA