MELO.jh006978.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh006978.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Dynamin-like 120 kDa protein, putative isoform 1
Location	chr04: 258575 .. 260551 (+)
RNA-Seq Expression	MELO.jh006978.1
Synteny	MELO.jh006978.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCGAGAGATTGAAGGGTTGTTGAAAAATGGAAGCTACAAGTGTCTCAGGAAGTAAGGGTACCGTGATTTCTGAGAAAGGGCAATTTCGGGGAATCCGAATAGAGAATCCCTTTACTTTGCAGGTTGGTCAAATTTTTACAGGCTTCGGCGTCGGATGTGGCGTCGGTATCGGCGTTGGCCGCCCCATAAACATGGGTAAATTCTTTTTCTTCCATTGTCGACCTTCTTTTGTCTCTATCAGTTTCTTTCATTAGCTTTGTCTTTCCCAATGACGGATCAAGTATAAGCTGCTGAGAAGAGTTATTTTCTGCTTTCATTTCATTTCATTTAGATTTCTCATGGAAAGTTTTCTGTTCTGCTCATCTTGGTGACCATGGATTAGTGTGAAATTTGAAAATGGATTAGTGTGTATTTTGAATGGGTTAAAACTCACTTTTCTCCGGTTTAAAATCACTTCAAACACTACTTAATCATTCAAAATCAATTTAATATTTGATTTTACACTTCTCAACCCCATGTTTTTACCTTAAATTTGATTTTAGATTATTTAAAATTATGTTCTAGAGTGATTAACAAAAGTGATTTTTAAAATCACTTCTGAAACGTGCCGCTAGTGGTATCATGATATGAAGGTTGTTTATATACTTATTTTTAAGTCAGGAGTGAGAGCAGTGGGATATGAACTCTACCCAACTTTGTAGAATTGGGCCCTCGGCAAGTAGTTATAAATGTATTCTTGTAGTTAGTTAGGTTGACTAGGTGATTGAAGTTTAATTTGAAATTTATATCTCATCAAGTTTAACCTGAATCTTTTTTATATAAAAATGTTGGAATTAATACCATTTGAAGCTGAGGATTTCTTTTAAAAGAGTCGTGTTTAAATTCAAACTCGCTAGTAGCTACCTAGAATATCAAAATCCAATGAGTTTCTATTAGTGTGTCGGTGGTTATCCCATAATGTTAGTGGTTAGCTGTGATTGGAACTAAGTAAAGCCGTAAATGTATCCAATTGATGCTGTGTTTTAATTCAAACTCAAACTTATGATACTGATTGACACTGTTTTGGTTGAATTTAGGCATCTTGGTGCTCGTGTTTTGATCTTTTGTCAGATTTAGCTGTTTTTTGTTGTCGGGTTTAGGCTTTGCATGTATGGTTTTTTGTGTTTTGTTGGTTGGATTTTGAGTGGTTTAGCTTAGGGCCTGTTTGATGATGTTTTTTATCTTGATTTTTCTGTATTTAAAATTATAATATTTACGTCCTTTTCCGTTGCTTTCCAATCTAAACAATTTTCAATGCCAAAGTGAAGCTAAAGAAAAATAGTTTAAGTTTATATTATCAACCTAATTTTCAGAAGTAGAAAACTAAAAATGAAGTAGCAATCAAATGGCCTTATTAATTGGTTTTTGAACAATTTTCACTTTCCACTTTGTGCATTTTCAGTTTCTTGATTGAAATTGTTGTTATTCTCAATTTAGCCTGACCAGCAAGGGATTTCCAGGTAAAGATGATACTCTTGGTGACACTTTTAAATTGGTCTGCATGATATGTATAAGATTTTTCAGTCTTTATTATTATTATTTTTTCCTTATCGTGTTGAATATGTGCAAGTTGTGGATATCTGCATGGTCCTTGATTGATGAACATGTCTGCTGGGCAGTGCTGCTAGTATATGAACATATGAAATTTACATTCATTTTTTCAGGTGCAATTCCTGTCATGAACGAATTAATGAGTGCCACAAGAGGTGCAACCGATGTGTTTTCCGGCATAACGAGGCAAAAAGAATTTGCTAAAGGAAAAAGTGTAGATGAAGAAACAAAAAAACGTTCCTATCATTCTTTAAATTAAAAAAAAATGAATTTTGAGAGAGATTGAGTTGTGTGCAAAAGAAACCAATAGAAGATAAGTTTCAGAAAATGTCGTTAAGAAGATTCCATTGCAAAACTGCTAAAATTCCAAAAGTTTTGAAACCAA

mRNA sequence

AGTCGAGAGATTGAAGGGTTGTTGAAAAATGGAAGCTACAAGTGTCTCAGGAAGTAAGGGTACCGTGATTTCTGAGAAAGGGCAATTTCGGGGAATCCGAATAGAGAATCCCTTTACTTTGCAGGTTGGTCAAATTTTTACAGGCTTCGGCGTCGGATGTGGCGTCGGTATCGGCGTTGGCCGCCCCATAAACATGGGTGCAATTCCTGTCATGAACGAATTAATGAGTGCCACAAGAGGTGCAACCGATGTGTTTTCCGGCATAACGAGGCAAAAAGAATTTGCTAAAGGAAAAAGTGTAGATGAAGAAACAAAAAAACGTTCCTATCATTCTTTAAATTAAAAAAAAATGAATTTTGAGAGAGATTGAGTTGTGTGCAAAAGAAACCAATAGAAGATAAGTTTCAGAAAATGTCGTTAAGAAGATTCCATTGCAAAACTGCTAAAATTCCAAAAGTTTTGAAACCAA

Coding sequence (CDS)

ATGGAAGCTACAAGTGTCTCAGGAAGTAAGGGTACCGTGATTTCTGAGAAAGGGCAATTTCGGGGAATCCGAATAGAGAATCCCTTTACTTTGCAGGTTGGTCAAATTTTTACAGGCTTCGGCGTCGGATGTGGCGTCGGTATCGGCGTTGGCCGCCCCATAAACATGGGTGCAATTCCTGTCATGAACGAATTAATGAGTGCCACAAGAGGTGCAACCGATGTGTTTTCCGGCATAACGAGGCAAAAAGAATTTGCTAAAGGAAAAAGTGTAGATGAAGAAACAAAAAAACGTTCCTATCATTCTTTAAATTAA

Protein sequence

MEATSVSGSKGTVISEKGQFRGIRIENPFTLQVGQIFTGFGVGCGVGIGVGRPINMGAIPVMNELMSATRGATDVFSGITRQKEFAKGKSVDEETKKRSYHSLN

Homology

[Close]

BLAST of MELO.jh006978.1 vs. NCBI nr
Match: XP_008465884.1 (PREDICTED: uncharacterized protein LOC103503467 isoform X3 [Cucumis melo])

HSP 1 Score: 158 bits (400), Expect = 2.13e-45
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLQVGQIFTGFGVGCGVGIGVGRPINMGAIP 60
          MEATSVSGSKGTVISEKGQFRGIRIENPFTL+VGQIFTGFGVGCGVGIGVGRPINMGAIP
Sbjct: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLKVGQIFTGFGVGCGVGIGVGRPINMGAIP 60

Query: 61 VMNELMSATRGATDVFSGITR 81
          VMNELMSATRGATD FSGITR
Sbjct: 61 VMNELMSATRGATDAFSGITR 81

[Close]

BLAST of MELO.jh006978.1 vs. NCBI nr
Match: XP_008465882.1 (PREDICTED: uncharacterized protein LOC103503467 isoform X1 [Cucumis melo])

HSP 1 Score: 158 bits (400), Expect = 2.30e-45
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLQVGQIFTGFGVGCGVGIGVGRPINMGAIP 60
          MEATSVSGSKGTVISEKGQFRGIRIENPFTL+VGQIFTGFGVGCGVGIGVGRPINMGAIP
Sbjct: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLKVGQIFTGFGVGCGVGIGVGRPINMGAIP 60

Query: 61 VMNELMSATRGATDVFSGITR 81
          VMNELMSATRGATD FSGITR
Sbjct: 61 VMNELMSATRGATDAFSGITR 81

[Close]

BLAST of MELO.jh006978.1 vs. NCBI nr
Match: XP_008465883.1 (PREDICTED: uncharacterized protein LOC103503467 isoform X2 [Cucumis melo])

HSP 1 Score: 158 bits (400), Expect = 2.30e-45
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLQVGQIFTGFGVGCGVGIGVGRPINMGAIP 60
          MEATSVSGSKGTVISEKGQFRGIRIENPFTL+VGQIFTGFGVGCGVGIGVGRPINMGAIP
Sbjct: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLKVGQIFTGFGVGCGVGIGVGRPINMGAIP 60

Query: 61 VMNELMSATRGATDVFSGITR 81
          VMNELMSATRGATD FSGITR
Sbjct: 61 VMNELMSATRGATDAFSGITR 81

[Close]

BLAST of MELO.jh006978.1 vs. NCBI nr
Match: XP_038888208.1 (uncharacterized protein LOC120078076 [Benincasa hispida])

HSP 1 Score: 150 bits (378), Expect = 4.59e-42
Identity = 73/81 (90.12%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLQVGQIFTGFGVGCGVGIGVGRPINMGAIP 60
          MEAT+VS SKGTVIS++GQFRGIRIENPFTL+VGQIFTGFGVGCG+GIGVGRPINMGAIP
Sbjct: 1  MEATNVSESKGTVISQEGQFRGIRIENPFTLKVGQIFTGFGVGCGIGIGVGRPINMGAIP 60

Query: 61 VMNELMSATRGATDVFSGITR 81
          VMNE+MSATRGATD FSGITR
Sbjct: 61 VMNEVMSATRGATDAFSGITR 81

[Close]

BLAST of MELO.jh006978.1 vs. NCBI nr
Match: XP_011652693.1 (uncharacterized protein LOC101209798 isoform X3 [Cucumis sativus])

HSP 1 Score: 148 bits (374), Expect = 1.70e-41
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLQVGQIFTGFGVGCGVGIGVGRPINMGAIP 60
          MEATSVS SKGTVIS+KG FRGIRIENPFTL+VGQIFTGFGVGCGVGIGVGRP+NMGAIP
Sbjct: 1  MEATSVSESKGTVISQKGHFRGIRIENPFTLKVGQIFTGFGVGCGVGIGVGRPMNMGAIP 60

Query: 61 VMNELMSATRGATDVFSGITR 81
           MNELMSATRGATD FSGITR
Sbjct: 61 GMNELMSATRGATDAFSGITR 81

[Close]

BLAST of MELO.jh006978.1 vs. ExPASy TrEMBL
Match: A0A1S3CPY7 (uncharacterized protein LOC103503467 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103503467 PE=4 SV=1)

HSP 1 Score: 158 bits (400), Expect = 1.03e-45
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLQVGQIFTGFGVGCGVGIGVGRPINMGAIP 60
          MEATSVSGSKGTVISEKGQFRGIRIENPFTL+VGQIFTGFGVGCGVGIGVGRPINMGAIP
Sbjct: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLKVGQIFTGFGVGCGVGIGVGRPINMGAIP 60

Query: 61 VMNELMSATRGATDVFSGITR 81
          VMNELMSATRGATD FSGITR
Sbjct: 61 VMNELMSATRGATDAFSGITR 81

[Close]

BLAST of MELO.jh006978.1 vs. ExPASy TrEMBL
Match: A0A1S3CPX8 (uncharacterized protein LOC103503467 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503467 PE=4 SV=1)

HSP 1 Score: 158 bits (400), Expect = 1.11e-45
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLQVGQIFTGFGVGCGVGIGVGRPINMGAIP 60
          MEATSVSGSKGTVISEKGQFRGIRIENPFTL+VGQIFTGFGVGCGVGIGVGRPINMGAIP
Sbjct: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLKVGQIFTGFGVGCGVGIGVGRPINMGAIP 60

Query: 61 VMNELMSATRGATDVFSGITR 81
          VMNELMSATRGATD FSGITR
Sbjct: 61 VMNELMSATRGATDAFSGITR 81

[Close]

BLAST of MELO.jh006978.1 vs. ExPASy TrEMBL
Match: A0A1S3CRB7 (uncharacterized protein LOC103503467 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503467 PE=4 SV=1)

HSP 1 Score: 158 bits (400), Expect = 1.11e-45
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLQVGQIFTGFGVGCGVGIGVGRPINMGAIP 60
          MEATSVSGSKGTVISEKGQFRGIRIENPFTL+VGQIFTGFGVGCGVGIGVGRPINMGAIP
Sbjct: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLKVGQIFTGFGVGCGVGIGVGRPINMGAIP 60

Query: 61 VMNELMSATRGATDVFSGITR 81
          VMNELMSATRGATD FSGITR
Sbjct: 61 VMNELMSATRGATDAFSGITR 81

[Close]

BLAST of MELO.jh006978.1 vs. ExPASy TrEMBL
Match: A0A0A0LHI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912960 PE=4 SV=1)

HSP 1 Score: 148 bits (374), Expect = 2.87e-41
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1   MEATSVSGSKGTVISEKGQFRGIRIENPFTLQVGQIFTGFGVGCGVGIGVGRPINMGAIP 60
           MEATSVS SKGTVIS+KG FRGIRIENPFTL+VGQIFTGFGVGCGVGIGVGRP+NMGAIP
Sbjct: 53  MEATSVSESKGTVISQKGHFRGIRIENPFTLKVGQIFTGFGVGCGVGIGVGRPMNMGAIP 112

Query: 61  VMNELMSATRGATDVFSGITR 81
            MNELMSATRGATD FSGITR
Sbjct: 113 GMNELMSATRGATDAFSGITR 133

[Close]

BLAST of MELO.jh006978.1 vs. ExPASy TrEMBL
Match: A0A6J1JY43 (uncharacterized protein LOC111490807 OS=Cucurbita maxima OX=3661 GN=LOC111490807 PE=4 SV=1)

HSP 1 Score: 142 bits (359), Expect = 1.06e-39
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 0


Query: 1  MEATSVSGSKGTVISEKGQFRGIRIENPFTLQVGQIFTGFGVGCGVGIGVGRPINMGAIP 60
          MEA  VS SKGTV SE+GQFRGIR+ENPFTL+VGQIFTGFGVGCGVGIGVGRPINMGAIP
Sbjct: 1  MEARIVSESKGTVTSERGQFRGIRMENPFTLKVGQIFTGFGVGCGVGIGVGRPINMGAIP 60

Query: 61 VMNELMSATRGATDVFSGITR 81
          VMNE+MSATRGATD  SG+TR
Sbjct: 61 VMNEVMSATRGATDALSGVTR 81

[Close]

BLAST of MELO.jh006978.1 vs. TAIR 10
Match: AT4G17540.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19
Identity = 43/75 (57.33%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 9  SKGTVISEKG---QFRGIRIENPFTLQVGQIFTGFGVGCGVGIGVGRPINMGAIPVMNEL 68
          S G V+ ++G     RGI+IENPF  +  Q+FTGFGVGCGVGIG G P+N+G+IP++ E+
Sbjct: 11 SNGVVMKKEGLGFSKRGIKIENPFAFKALQVFTGFGVGCGVGIGSGAPLNLGSIPMVGEI 70

Query: 69 MSATRGATDVFSGIT 81
          M++ RGAT+VFSG T
Sbjct: 71 MNSARGATNVFSGAT 85

The following BLAST results are available for this feature:

BLAST of MELO.jh006978.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465884.1	2.13e-45	97.53	PREDICTED: uncharacterized protein LOC103503467 isoform X3 [Cucumis melo]	[more]
XP_008465882.1	2.30e-45	97.53	PREDICTED: uncharacterized protein LOC103503467 isoform X1 [Cucumis melo]	[more]
XP_008465883.1	2.30e-45	97.53	PREDICTED: uncharacterized protein LOC103503467 isoform X2 [Cucumis melo]	[more]
XP_038888208.1	4.59e-42	90.12	uncharacterized protein LOC120078076 [Benincasa hispida]	[more]
XP_011652693.1	1.70e-41	91.36	uncharacterized protein LOC101209798 isoform X3 [Cucumis sativus]	[more]

BLAST of MELO.jh006978.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh006978.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CPY7	1.03e-45	97.53	uncharacterized protein LOC103503467 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CPX8	1.11e-45	97.53	uncharacterized protein LOC103503467 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CRB7	1.11e-45	97.53	uncharacterized protein LOC103503467 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LHI5	2.87e-41	91.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G912960 PE=4 SV=1	[more]
A0A6J1JY43	1.06e-39	86.42	uncharacterized protein LOC111490807 OS=Cucurbita maxima OX=3661 GN=LOC111490807...	[more]

BLAST of MELO.jh006978.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G17540.1	2.3e-19	57.33	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36051	DYNAMIN	coord: 16..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh006978.1.t1	MELO.jh006978.1.t1	mRNA