MELO.jh005068.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh005068.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Protein Ycf2
Location	chr03: 3800996 .. 3801262 (+)
RNA-Seq Expression	MELO.jh005068.1
Synteny	MELO.jh005068.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTGAATAAGAAGCCTAAGGGTTTTCTTATTGATGATAGTGATGATATTGATGATAGTGACGATATTGATGATAGTGGTGATATTAATGATAGTGACGATATCGACCGTGACCTTGATATGGAGCTGGAGCTTCTAACTATTATGAATGCGCTAACTAAGGATATAATGTTGGAAATAGACCAATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTTTTTGTATAATATGGATTCTAAACATTCATGATCTATAT

mRNA sequence

TTGCTGAATAAGAAGCCTAAGGGTTTTCTTATTGATGATAGTGATGATATTGATGATAGTGACGATATTGATGATAGTGGTGATATTAATGATAGTGACGATATCGACCGTGACCTTGATATGGAGCTGGAGCTTCTAACTATTATGAATGCGCTAACTAAGGATATAATGTTGGAAATAGACCAATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTTTTTGTATAATATGGATTCTAAACATTCATGATCTATAT

Coding sequence (CDS)

ATGGAGCTGGAGCTTCTAACTATTATGAATGCGCTAACTAAGGATATAATGTTGGAAATAGACCAATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTTTTTGTATAATATGGATTCTAAACATTCATGATCTATAT

Protein sequence

MELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDLY

Homology

[Close]

BLAST of MELO.jh005068.1 vs. NCBI nr
Match: ASY96830.1 (Ycf2 [Cucumis melo var. momordica] >ASY97004.1 Ycf2 [Cucumis melo var. cantalupo] >ASY97352.1 Ycf2 [Cucumis melo var. flexuosus] >ASY96836.1 Ycf2 [Cucumis melo var. momordica] >ASY97010.1 Ycf2 [Cucumis melo var. cantalupo])

HSP 1 Score: 81.6 bits (200), Expect = 2.20e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDLY 49
            ELELLT+MNALTKD+MLEID+FYITLQFELAKAMS CIIWI NIH+LY
Sbjct: 1699 ELELLTMMNALTKDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHNLY 1746

[Close]

BLAST of MELO.jh005068.1 vs. NCBI nr
Match: YP_004841827.1 (hypothetical chloroplast RF21 [Cucumis melo subsp. melo] >YP_004841847.1 hypothetical chloroplast RF21 [Cucumis melo subsp. melo] >YP_009860117.1 hypothetical chloroplast RF21 [Cucumis melo subsp. agrestis] >YP_009860137.1 hypothetical chloroplast RF21 [Cucumis melo subsp. agrestis] >ASY96656.1 Ycf2 [Cucumis melo var. conomon] >ASY96743.1 Ycf2 [Cucumis melo var. makuwa] >ASY96917.1 Ycf2 [Cucumis melo var. dudaim] >ASY97178.1 Ycf2 [Cucumis melo var. inodorus] >QJF46428.1 Ycf2 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 2.20e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDLY 49
            ELELLT+MNALTKD+MLEID+FYITLQFELAKAMS CIIWI NIH+LY
Sbjct: 1699 ELELLTMMNALTKDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHNLY 1746

[Close]

BLAST of MELO.jh005068.1 vs. NCBI nr
Match: ASY96395.1 (Ycf2 [Cucumis melo subsp. agrestis] >ASY96401.1 Ycf2 [Cucumis melo subsp. agrestis])

HSP 1 Score: 81.6 bits (200), Expect = 2.20e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDLY 49
            ELELLT+MNALTKD+MLEID+FYITLQFELAKAMS CIIWI NIH+LY
Sbjct: 1697 ELELLTMMNALTKDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHNLY 1744

[Close]

BLAST of MELO.jh005068.1 vs. NCBI nr
Match: QRW36598.1 (hypothetical chloroplast RF21 [Cucumis melo] >QRW36618.1 hypothetical chloroplast RF21 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 2.20e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDLY 49
            ELELLT+MNALTKD+MLEID+FYITLQFELAKAMS CIIWI NIH+LY
Sbjct: 1699 ELELLTMMNALTKDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHNLY 1746

[Close]

BLAST of MELO.jh005068.1 vs. NCBI nr
Match: KAA0063018.1 (putative chloroplast RF21 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 2.20e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 2   ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDLY 49
           ELELLT+MNALTKD+MLEID+FYITLQFELAKAMS CIIWI NIH+LY
Sbjct: 386 ELELLTMMNALTKDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHNLY 433

[Close]

BLAST of MELO.jh005068.1 vs. ExPASy Swiss-Prot
Match: P56786 (Protein Ycf2 OS=Arabidopsis thaliana OX=3702 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-14
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDL 49
            ELELLT+MNALT D+MLEID+FYITLQFELAKAMS CIIWI NIHDL
Sbjct: 1711 ELELLTMMNALTMDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHDL 1757

[Close]

BLAST of MELO.jh005068.1 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.5e-14
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDLY 50
            ELELLT+MNALT ++ LEIDQFYITLQFEL KAMS CIIWI NIHDLY
Sbjct: 1405 ELELLTMMNALTMEMKLEIDQFYITLQFELIKAMSPCIIWIPNIHDLY 1452

[Close]

BLAST of MELO.jh005068.1 vs. ExPASy Swiss-Prot
Match: A4QKX4 (Protein Ycf2 A OS=Crucihimalaya wallichii OX=78192 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.5e-14
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDL 49
            ELELLT+MNALT D+M EID+FYITLQFELAKAMS CIIWI NIHDL
Sbjct: 1710 ELELLTMMNALTMDMMSEIDRFYITLQFELAKAMSPCIIWIPNIHDL 1756

[Close]

BLAST of MELO.jh005068.1 vs. ExPASy Swiss-Prot
Match: A4QKZ7 (Protein Ycf2 B OS=Crucihimalaya wallichii OX=78192 GN=ycf2-B PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.5e-14
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDL 49
            ELELLT+MNALT D+M EID+FYITLQFELAKAMS CIIWI NIHDL
Sbjct: 1710 ELELLTMMNALTMDMMSEIDRFYITLQFELAKAMSPCIIWIPNIHDL 1756

[Close]

BLAST of MELO.jh005068.1 vs. ExPASy Swiss-Prot
Match: A4QJF8 (Protein Ycf2 OS=Aethionema cordifolium OX=434059 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.5e-14
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDL 49
            ELELLT+MNALT D+M EID+FYITLQFELAKAMS CIIWI NIHDL
Sbjct: 1715 ELELLTMMNALTMDMMSEIDRFYITLQFELAKAMSPCIIWIPNIHDL 1761

[Close]

BLAST of MELO.jh005068.1 vs. ExPASy TrEMBL
Match: A0A249RYX8 (Protein Ycf2 OS=Cucumis melo var. momordica OX=2034244 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.07e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDLY 49
            ELELLT+MNALTKD+MLEID+FYITLQFELAKAMS CIIWI NIH+LY
Sbjct: 1699 ELELLTMMNALTKDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHNLY 1746

[Close]

BLAST of MELO.jh005068.1 vs. ExPASy TrEMBL
Match: G3ETW1 (Protein Ycf2 OS=Cucumis melo subsp. melo OX=412675 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.07e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDLY 49
            ELELLT+MNALTKD+MLEID+FYITLQFELAKAMS CIIWI NIH+LY
Sbjct: 1699 ELELLTMMNALTKDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHNLY 1746

[Close]

BLAST of MELO.jh005068.1 vs. ExPASy TrEMBL
Match: A0A249RZ46 (Protein Ycf2 OS=Cucumis melo var. dudaim OX=2034236 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.07e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDLY 49
            ELELLT+MNALTKD+MLEID+FYITLQFELAKAMS CIIWI NIH+LY
Sbjct: 1699 ELELLTMMNALTKDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHNLY 1746

[Close]

BLAST of MELO.jh005068.1 vs. ExPASy TrEMBL
Match: A0A1S4EU72 (Protein Ycf2 OS=Cucumis melo OX=3656 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.07e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDLY 49
            ELELLT+MNALTKD+MLEID+FYITLQFELAKAMS CIIWI NIH+LY
Sbjct: 1699 ELELLTMMNALTKDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHNLY 1746

[Close]

BLAST of MELO.jh005068.1 vs. ExPASy TrEMBL
Match: A0A249RZN4 (Protein Ycf2 OS=Cucumis melo var. cantalupensis OX=3658 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.07e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDLY 49
            ELELLT+MNALTKD+MLEID+FYITLQFELAKAMS CIIWI NIH+LY
Sbjct: 1699 ELELLTMMNALTKDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHNLY 1746

[Close]

BLAST of MELO.jh005068.1 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-15
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDL 49
            ELELLT+MNALT D+MLEID+FYITLQFELAKAMS CIIWI NIHDL
Sbjct: 1711 ELELLTMMNALTMDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHDL 1757

[Close]

BLAST of MELO.jh005068.1 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 79.0 bits (193), Expect = 1.2e-15
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 2    ELELLTIMNALTKDIMLEIDQFYITLQFELAKAMSFCIIWILNIHDL 49
            ELELLT+MNALT D+MLEID+FYITLQFELAKAMS CIIWI NIHDL
Sbjct: 1711 ELELLTMMNALTMDMMLEIDRFYITLQFELAKAMSPCIIWIPNIHDL 1757

The following BLAST results are available for this feature:

BLAST of MELO.jh005068.1 vs. NCBI nr


Match Name	E-value	Identity	Description
ASY96830.1	2.20e-16	87.50	Ycf2 [Cucumis melo var. momordica] >ASY97004.1 Ycf2 [Cucumis melo var. cantalupo...	[more]
YP_004841827.1	2.20e-16	87.50	hypothetical chloroplast RF21 [Cucumis melo subsp. melo] >YP_004841847.1 hypothe...	[more]
ASY96395.1	2.20e-16	87.50	Ycf2 [Cucumis melo subsp. agrestis] >ASY96401.1 Ycf2 [Cucumis melo subsp. agrest...	[more]
QRW36598.1	2.20e-16	87.50	hypothetical chloroplast RF21 [Cucumis melo] >QRW36618.1 hypothetical chloroplas...	[more]
KAA0063018.1	2.20e-16	87.50	putative chloroplast RF21 [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh005068.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56786	1.7e-14	87.23	Protein Ycf2 OS=Arabidopsis thaliana OX=3702 GN=ycf2-A PE=3 SV=1	[more]
Q2QD30	6.5e-14	83.33	Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1	[more]
A4QKX4	8.5e-14	85.11	Protein Ycf2 A OS=Crucihimalaya wallichii OX=78192 GN=ycf2-A PE=3 SV=1	[more]
A4QKZ7	8.5e-14	85.11	Protein Ycf2 B OS=Crucihimalaya wallichii OX=78192 GN=ycf2-B PE=3 SV=1	[more]
A4QJF8	8.5e-14	85.11	Protein Ycf2 OS=Aethionema cordifolium OX=434059 GN=ycf2-A PE=3 SV=1	[more]

BLAST of MELO.jh005068.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A249RYX8	1.07e-16	87.50	Protein Ycf2 OS=Cucumis melo var. momordica OX=2034244 GN=ycf2 PE=3 SV=1	[more]
G3ETW1	1.07e-16	87.50	Protein Ycf2 OS=Cucumis melo subsp. melo OX=412675 GN=ycf2 PE=3 SV=1	[more]
A0A249RZ46	1.07e-16	87.50	Protein Ycf2 OS=Cucumis melo var. dudaim OX=2034236 GN=ycf2 PE=3 SV=1	[more]
A0A1S4EU72	1.07e-16	87.50	Protein Ycf2 OS=Cucumis melo OX=3656 GN=ycf2 PE=3 SV=1	[more]
A0A249RZN4	1.07e-16	87.50	Protein Ycf2 OS=Cucumis melo var. cantalupensis OX=3658 GN=ycf2 PE=3 SV=1	[more]

BLAST of MELO.jh005068.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	1.2e-15	87.23	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	1.2e-15	87.23	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33078:SF55	PROTEIN YCF2	coord: 2..48
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 2..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh005068.1.t1	MELO.jh005068.1.t1	mRNA