MELO.jh003957.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh003957.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr02: 16459281 .. 16459985 (+)
RNA-Seq ExpressionMELO.jh003957.1
SyntenyMELO.jh003957.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTATTTCTCCACACGCCGTTCGCTTCAGCCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTCCCATCCGCTGTCTTAAGTGGGCGGACGTTGGGAGAGAATACATTGAGGTCGTCTAGGGCGACCTCCAAGTAATTAAATGCACTACACATTTATATATGATTTCATTTGAAACATATCTAACTTTAACCAATCTAATGTGTTATGTTTGTAATGTGCAGCGATTGTTTGTGCTTGATTTCAATGATCAAACAATGAACAGGTTTGTTGAGCATCAGATGCTCACAACCTTTAAAGAGTTCCAGGCCGACTGTCATAGACATTTCAAAAAGTACAGCGACTCGGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTGATGAGGATTGGCACTTCCTCTGCAACCATTATATCAGTCGTGCATTCCAGGTATTTGTCATGATTAATTATGATAACAAGTTTTTATATGTATAAGAAATAAACAATATAATTGTTTTAATGCAGGAGCAATCACGGACAAACAAGGTTGCTAGACAGAAGCAGCCTTACAATCATAGTAGTGGGTCCAAGTCGTTTCTACAATGACAGTATGAGCTCGCTGAAAGAAGAGGGCAGCCGGTCGATCGTGTGGAATTGTTCCGGGAAACACACGTTCGAGCTGGGACATTCGTGTCACAGGCCGCCGAGGATGCGTAT

mRNA sequence

CCTATTTCTCCACACGCCGTTCGCTTCAGCCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTCCCATCCGCTGTCTTAAGTGGGCGGACGTTGGGAGAGAATACATTGAGGTCGTCTAGGGCGACCTCCAAGTAATTAAATGCACTACACATTTATATATGATTTCATTTGAAACATATCTAACTTTAACCAATCTAATGTGTTATGTTTGTAATGTGCAGCGATTGTTTGTGCTTGATTTCAATGATCAAACAATGAACAGGTTTGTTGAGCATCAGATGCTCACAACCTTTAAAGAGTTCCAGGCCGACTGTCATAGACATTTCAAAAAGTACAGCGACTCGGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTGATGAGGATTGGCACTTCCTCTGCAACCATTATATCAGTCGTGCATTCCAGTGGGTCCAAGTCGTTTCTACAATGACAGTATGAGCTCGCTGAAAGAAGAGGGCAGCCGGTCGATCGTGTGGAATTGTTCCGGGAAACACACGTTCGAGCTGGGACATTCGTGTCACAGGCCGCCGAGGATGCGTAT

Coding sequence (CDS)

ATGATTTCATTTGAAACATATCTAACTTTAACCAATCTAATGTGTTATGTTTGTAATGTGCAGCGATTGTTTGTGCTTGATTTCAATGATCAAACAATGAACAGGTTTGTTGAGCATCAGATGCTCACAACCTTTAAAGAGTTCCAGGCCGACTGTCATAGACATTTCAAAAAGTACAGCGACTCGGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTGATGAGGATTGGCACTTCCTCTGCAACCATTATATCAGTCGTGCATTCCAGTGGGTCCAAGTCGTTTCTACAATGACAGTATGA

Protein sequence

MISFETYLTLTNLMCYVCNVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDEDWHFLCNHYISRAFQWVQVVSTMTV
Homology
BLAST of MELO.jh003957.1 vs. NCBI nr
Match: KAA0050757.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (422), Expect = 4.83e-51
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0

Query: 14 MCYVCNVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNAL 73
          MCYVCNVQR FVLDFNDQ MNRFVEHQMLTTFKEFQADCHRHFKKYSD EEARANPPNAL
Sbjct: 1  MCYVCNVQRFFVLDFNDQAMNRFVEHQMLTTFKEFQADCHRHFKKYSDPEEARANPPNAL 60

Query: 74 VGRDEDWHFLCNHYISRAFQ 93
          VGRDEDWHFLC+HYISRAFQ
Sbjct: 61 VGRDEDWHFLCDHYISRAFQ 80

BLAST of MELO.jh003957.1 vs. NCBI nr
Match: KAA0043385.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (399), Expect = 5.23e-45
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 20  VQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDED 79
           ++RLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDED
Sbjct: 106 IERLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDED 165

Query: 80  WHFLCNHYISRAFQW 94
           WHFLCNHYISRAFQ+
Sbjct: 166 WHFLCNHYISRAFQY 180

BLAST of MELO.jh003957.1 vs. NCBI nr
Match: KAA0048673.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK18171.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (381), Expect = 1.32e-43
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 0

Query: 19  NVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDE 78
           ++QRLFVLDFNDQ MNRFVEHQMLTTFKEF+ADCHRHFKKYSD EEARANPPNALVGRDE
Sbjct: 114 DLQRLFVLDFNDQAMNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALVGRDE 173

Query: 79  DWHFLCNHYISRAFQ 93
           DWHFLC+HYISRAFQ
Sbjct: 174 DWHFLCDHYISRAFQ 188

BLAST of MELO.jh003957.1 vs. NCBI nr
Match: KAA0037900.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 154 bits (390), Expect = 2.64e-43
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0

Query: 19  NVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDE 78
           ++QRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSD EEARANPPNALVGRDE
Sbjct: 114 DLQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDPEEARANPPNALVGRDE 173

Query: 79  DWHFLCNHYISRAFQ 93
           DWHFLC+HYISRAFQ
Sbjct: 174 DWHFLCDHYISRAFQ 188

BLAST of MELO.jh003957.1 vs. NCBI nr
Match: TYK11881.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (375), Expect = 4.61e-43
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0

Query: 20  VQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDED 79
           V RLFVLDFNDQ MNRFVEHQMLTTFKEF+ADCHRHFKKYSD EEARANPPNALVGRDED
Sbjct: 81  VCRLFVLDFNDQAMNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALVGRDED 140

Query: 80  WHFLCNHYISRAFQ 93
           WHFLC+HYISRAFQ
Sbjct: 141 WHFLCDHYISRAFQ 154

BLAST of MELO.jh003957.1 vs. ExPASy TrEMBL
Match: A0A5A7U8P0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00050 PE=4 SV=1)

HSP 1 Score: 167 bits (422), Expect = 2.34e-51
Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0

Query: 14 MCYVCNVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNAL 73
          MCYVCNVQR FVLDFNDQ MNRFVEHQMLTTFKEFQADCHRHFKKYSD EEARANPPNAL
Sbjct: 1  MCYVCNVQRFFVLDFNDQAMNRFVEHQMLTTFKEFQADCHRHFKKYSDPEEARANPPNAL 60

Query: 74 VGRDEDWHFLCNHYISRAFQ 93
          VGRDEDWHFLC+HYISRAFQ
Sbjct: 61 VGRDEDWHFLCDHYISRAFQ 80

BLAST of MELO.jh003957.1 vs. ExPASy TrEMBL
Match: A0A5A7TPP3 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00560 PE=4 SV=1)

HSP 1 Score: 158 bits (399), Expect = 2.53e-45
Identity = 72/75 (96.00%), Postives = 75/75 (100.00%), Query Frame = 0

Query: 20  VQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDED 79
           ++RLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDED
Sbjct: 106 IERLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDED 165

Query: 80  WHFLCNHYISRAFQW 94
           WHFLCNHYISRAFQ+
Sbjct: 166 WHFLCNHYISRAFQY 180

BLAST of MELO.jh003957.1 vs. ExPASy TrEMBL
Match: A0A5D3D1Q1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001030 PE=4 SV=1)

HSP 1 Score: 151 bits (381), Expect = 6.40e-44
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 0

Query: 19  NVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDE 78
           ++QRLFVLDFNDQ MNRFVEHQMLTTFKEF+ADCHRHFKKYSD EEARANPPNALVGRDE
Sbjct: 114 DLQRLFVLDFNDQAMNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALVGRDE 173

Query: 79  DWHFLCNHYISRAFQ 93
           DWHFLC+HYISRAFQ
Sbjct: 174 DWHFLCDHYISRAFQ 188

BLAST of MELO.jh003957.1 vs. ExPASy TrEMBL
Match: A0A5A7T3I9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00700 PE=4 SV=1)

HSP 1 Score: 154 bits (390), Expect = 1.28e-43
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0

Query: 19  NVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDE 78
           ++QRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSD EEARANPPNALVGRDE
Sbjct: 114 DLQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDPEEARANPPNALVGRDE 173

Query: 79  DWHFLCNHYISRAFQ 93
           DWHFLC+HYISRAFQ
Sbjct: 174 DWHFLCDHYISRAFQ 188

BLAST of MELO.jh003957.1 vs. ExPASy TrEMBL
Match: A0A5D3CJ98 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00320 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 2.23e-43
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0

Query: 20  VQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDED 79
           V RLFVLDFNDQ MNRFVEHQMLTTFKEF+ADCHRHFKKYSD EEARANPPNALVGRDED
Sbjct: 81  VCRLFVLDFNDQAMNRFVEHQMLTTFKEFRADCHRHFKKYSDPEEARANPPNALVGRDED 140

Query: 80  WHFLCNHYISRAFQ 93
           WHFLC+HYISRAFQ
Sbjct: 141 WHFLCDHYISRAFQ 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050757.14.83e-5195.00CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0043385.15.23e-4596.00CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0048673.11.32e-4392.00CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK18171.1 CACTA en-... [more]
KAA0037900.12.64e-4394.67CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
TYK11881.14.61e-4393.24CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U8P02.34e-5195.00CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7TPP32.53e-4596.00CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3D1Q16.40e-4492.00CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7T3I91.28e-4394.67CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3CJ982.23e-4393.24CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh003957.1.t1MELO.jh003957.1.t1mRNA