MELO.jh001838.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh001838.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Locationchr01: 27373489 .. 27373729 (+)
RNA-Seq ExpressionMELO.jh001838.1
SyntenyMELO.jh001838.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGACTCAGTTTTCTCGTCTTGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCTGTTTGCTCTGTATTCGTCATAAGTCTTTCGATCTTTGGTGATCTACTCCAAAGACTTCAACCCACACTCCTGGCATGCTCCTTGACACGTTTTCCCAAGGTATAGGTCGAGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTTCAAAAGATGGCCGAAGCTTCCAACGAGTGG

mRNA sequence

CGGACTCAGTTTTCTCGTCTTGGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCTGTTTGCTCTGTATTCGTCATAAGTCTTTCGATCTTTGGTGATCTACTCCAAAGACTTCAACCCACACTCCTGGCATGCTCCTTGACACGTTTTCCCAAGGTATAGGTCGAGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTTCAAAAGATGGCCGAAGCTTCCAACGAGTGG

Coding sequence (CDS)

ATGCTCCTTGACACGTTTTCCCAAGGTATAGGTCGAGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTTCAAAAGATGGCCGAAGCTTCCAACGAGT

Protein sequence

MLLDTFSQGIGREASSLEGELWCDPKRFKRWPKLPTS
Homology
BLAST of MELO.jh001838.1 vs. NCBI nr
Match: KAA0066117.1 (mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 3.81e-15
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 1   MLLDTFSQGIGREASSLEGELWCDPKRFKRWPKLPTS 37
           ML DTFS GIGREASSLEGELWCDPKR KRWPKLPTS
Sbjct: 179 MLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTS 215

BLAST of MELO.jh001838.1 vs. NCBI nr
Match: KAA0026022.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 2.24e-13
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 1  MLLDTFSQGIGREASSLEGELWCDPKRFKRWPKLPTS 37
          ML D FS GIGREA+SLEGELWCDPKR KRWP LPTS
Sbjct: 1  MLPDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTS 37

BLAST of MELO.jh001838.1 vs. NCBI nr
Match: KAA0059489.1 (ribosomal protein L5 [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 1.30e-12
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 1  MLLDTFSQGIGREASSLEGELWCDPKRFKRWPKLPTS 37
          MLL TFSQGIGRE SSLEG+LWC+PK  KRWP LPT+
Sbjct: 46 MLLHTFSQGIGREESSLEGQLWCNPKGSKRWPMLPTA 82

BLAST of MELO.jh001838.1 vs. NCBI nr
Match: KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.11e-11
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 1  MLLDTFSQGIGREASSLEGELWCDPKRFKRWPKLPTS 37
          ML   F+QGIGREASSLEGELW DPKRFKRWP L TS
Sbjct: 46 MLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATS 82

BLAST of MELO.jh001838.1 vs. NCBI nr
Match: TYK15439.1 (uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.39e-11
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 1   MLLDTFSQGIGREASSLEGELWCDPKRFKRWPKLPTS 37
           ML D FS GI REA SLEGELWCDPKR +RWP LPTS
Sbjct: 164 MLPDMFSGGIDREARSLEGELWCDPKRSERWPMLPTS 200

BLAST of MELO.jh001838.1 vs. ExPASy TrEMBL
Match: A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.84e-15
Identity = 34/37 (91.89%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 1   MLLDTFSQGIGREASSLEGELWCDPKRFKRWPKLPTS 37
           ML DTFS GIGREASSLEGELWCDPKR KRWPKLPTS
Sbjct: 179 MLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTS 215

BLAST of MELO.jh001838.1 vs. ExPASy TrEMBL
Match: A0A5A7SLK2 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29721G00010 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.09e-13
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 1  MLLDTFSQGIGREASSLEGELWCDPKRFKRWPKLPTS 37
          ML D FS GIGREA+SLEGELWCDPKR KRWP LPTS
Sbjct: 1  MLPDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTS 37

BLAST of MELO.jh001838.1 vs. ExPASy TrEMBL
Match: A0A5A7V129 (Ribosomal protein L5 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold242G002350 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.31e-13
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 1  MLLDTFSQGIGREASSLEGELWCDPKRFKRWPKLPTS 37
          MLL TFSQGIGRE SSLEG+LWC+PK  KRWP LPT+
Sbjct: 46 MLLHTFSQGIGREESSLEGQLWCNPKGSKRWPMLPTA 82

BLAST of MELO.jh001838.1 vs. ExPASy TrEMBL
Match: A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.37e-12
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = 0

Query: 1  MLLDTFSQGIGREASSLEGELWCDPKRFKRWPKLPTS 37
          ML   F+QGIGREASSLEGELW DPKRFKRWP L TS
Sbjct: 46 MLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATS 82

BLAST of MELO.jh001838.1 vs. ExPASy TrEMBL
Match: A0A5D3CZ27 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00010 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.75e-12
Identity = 29/37 (78.38%), Postives = 30/37 (81.08%), Query Frame = 0

Query: 1   MLLDTFSQGIGREASSLEGELWCDPKRFKRWPKLPTS 37
           ML D FS GI REA SLEGELWCDPKR +RWP LPTS
Sbjct: 164 MLPDMFSGGIDREARSLEGELWCDPKRSERWPMLPTS 200

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0066117.13.81e-1591.89mitochondrial intermembrane space import and assembly protein 40 [Cucumis melo v... [more]
KAA0026022.12.24e-1383.78Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
KAA0059489.11.30e-1278.38ribosomal protein L5 [Cucumis melo var. makuwa][more]
KAA0061317.11.11e-1181.08hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142... [more]
TYK15439.11.39e-1178.38uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VGB11.84e-1591.89Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo... [more]
A0A5A7SLK21.09e-1383.78Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... [more]
A0A5A7V1296.31e-1378.38Ribosomal protein L5 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7V3685.37e-1281.08Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CZ276.75e-1278.38ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh001838.1.t1MELO.jh001838.1.t1mRNA