MELO.jh001565.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh001565.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr01: 21979284 .. 21979925 (-)
RNA-Seq Expression	MELO.jh001565.1
Synteny	MELO.jh001565.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATATTACGATGAACTTACATATGTGTTTGGTCACGATAGGGCAATGAGTCGGTTCGCTGAGACATTCATCGACGTGGGGTCTAACGAGCCTGGCGGGTATGACGGATTTGATATAGAGGATGGAAACGAGGATTTTCCGCTTGTGTACAGGCAGAGGATTGACCTATCACGAAATGATGTACGCACATCACGACCTTCTTGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCAAAGAGGACGAGGGGAAGTCCGCGAGAGGTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGTCCTTGCCAATGACAACCATGTGCGCACGAAATTCTTCCACATATTGCATGAGATGTCGGAACTCACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTCTGTCTCGTATGGACAACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACAAGACATGACGAGATAGTTTATGTTTGTACTGACCTGGGTTGCTTCTTATTTGCTTACTTTTTTTTGTATGATATTGACTGTTTATGCTTTTGCTATTGTAGTCAACTATTTTTTTCT

mRNA sequence

TTCATATTACGATGAACTTACATATGTGTTTGGTCACGATAGGGCAATGAGTCGGTTCGCTGAGACATTCATCGACGTGGGGTCTAACGAGCCTGGCGGGTATGACGGATTTGATATAGAGGATGGAAACGAGGATTTTCCGCTTGTGTACAGGCAGAGGATTGACCTATCACGAAATGATGTACGCACATCACGACCTTCTTGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCAAAGAGGACGAGGGGAAGTCCGCGAGAGGTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGTCCTTGCCAATGACAACCATGTGCGCACGAAATTCTTCCACATATTGCATGAGATGTCGGAACTCACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTCTGTCTCGTATGGACAACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACAAGACATGACGAGATAGTTTATGTTTGTACTGACCTGGGTTGCTTCTTATTTGCTTACTTTTTTTTGTATGATATTGACTGTTTATGCTTTTGCTATTGTAGTCAACTATTTTTTTCT

Coding sequence (CDS)

ATGAGTCGGTTCGCTGAGACATTCATCGACGTGGGGTCTAACGAGCCTGGCGGGTATGACGGATTTGATATAGAGGATGGAAACGAGGATTTTCCGCTTGTGTACAGGCAGAGGATTGACCTATCACGAAATGATGTACGCACATCACGACCTTCTTGCGCTTCAGAGGGTAGGACCGGATCGAGTGGATCAAAGAGGACGAGGGGAAGTCCGCGAGAGGTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGTCCTTGCCAATGACAACCATGTGCGCACGAAATTCTTCCACATATTGCATGAGATGTCGGAACTCACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTCTGTCTCGTATGGACAACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACAAGACATGACGAGATAG

Protein sequence

MSRFAETFIDVGSNEPGGYDGFDIEDGNEDFPLVYRQRIDLSRNDVRTSRPSCASEGRTGSSGSKRTRGSPREVDVEGIHLALDQTNEQLRMIAEWPARVLANDNHVRTKFFHILHEMSELTSLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR

Homology

[Close]

BLAST of MELO.jh001565.1 vs. NCBI nr
Match: KAA0041940.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK17875.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 300 bits (767), Expect = 3.90e-101
Identity = 150/163 (92.02%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 2   SRFAETFIDVGSNEPGGYDGFDIEDGNEDFPLVYRQRIDLSRNDVRTSRPSCASEGRTGS 61
           SRFAETFIDVGSN+PGGYDGFDI DGNEDFP VYRQ IDLS+N+VRTSRPS ASEGRT S
Sbjct: 60  SRFAETFIDVGSNKPGGYDGFDIGDGNEDFPPVYRQGIDLSQNNVRTSRPSRASEGRTRS 119

Query: 62  SGSKRTRGSPREVDVEGIHLALDQTNEQLRMIAEWPARVLANDNHVRTKFFHILHEMSEL 121
           SGSKRTRGSPR+VDVEGIHLALDQTNEQLRMI EWPARVL NDN VRTKFF ILHEMSEL
Sbjct: 120 SGSKRTRGSPRDVDVEGIHLALDQTNEQLRMIVEWPARVLVNDNRVRTKFFRILHEMSEL 179

Query: 122 TSLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR 164
           TSLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR
Sbjct: 180 TSLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR 222

[Close]

BLAST of MELO.jh001565.1 vs. NCBI nr
Match: KAA0059933.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24879.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 277 bits (709), Expect = 8.58e-92
Identity = 137/162 (84.57%), Postives = 147/162 (90.74%), Query Frame = 0


Query: 3   RFAETFIDVGSNEPGGYDGFDIEDGNEDFPLVYRQRIDLSRNDVRTSRPSCASEGRTGSS 62
           +FAETF DVGSNEPGGY+GFD+ DGNE+FP VY Q ID+S +DVR SRPSCASEGRTGSS
Sbjct: 96  QFAETFTDVGSNEPGGYEGFDMADGNEEFPSVYSQGIDMSLDDVRASRPSCASEGRTGSS 155

Query: 63  GSKRTRGSPREVDVEGIHLALDQTNEQLRMIAEWPARVLANDNHVRTKFFHILHEMSELT 122
           GSKR RGS REVDVEGIHLALDQTNEQLRMI EWPARVL NDNHVRT+FF IL EM ELT
Sbjct: 156 GSKRKRGSQREVDVEGIHLALDQTNEQLRMIEEWPARVLVNDNHVRTEFFRILCEMPELT 215

Query: 123 SLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR 164
           SLDRALLQRHLLSRMD+LRGF+LMPEDEREGF RVLL+DMTR
Sbjct: 216 SLDRALLQRHLLSRMDDLRGFILMPEDEREGFSRVLLRDMTR 257

[Close]

BLAST of MELO.jh001565.1 vs. NCBI nr
Match: TYK29656.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 270 bits (689), Expect = 4.09e-90
Identity = 134/164 (81.71%), Postives = 145/164 (88.41%), Query Frame = 0


Query: 1   MSRFAETFIDVGSNEPGGYDGFDIEDGNEDFPLVYRQRIDLSRNDVRTSRPSCASEGRTG 60
           M RFAETF+DVGSNEPGGYDGFD+ D NE+FP VY Q IDLS++DV  SRPS ASEGRT 
Sbjct: 1   MGRFAETFVDVGSNEPGGYDGFDMGDRNEEFPPVYSQGIDLSQDDVHASRPSRASEGRTE 60

Query: 61  SSGSKRTRGSPREVDVEGIHLALDQTNEQLRMIAEWPARVLANDNHVRTKFFHILHEMSE 120
           SSGSKR RGS REVDVEGIHLALDQTN QL+MIAEWPA  L NDNHVRT+FF IL EM E
Sbjct: 61  SSGSKRKRGSQREVDVEGIHLALDQTNNQLKMIAEWPACALVNDNHVRTEFFRILREMPE 120

Query: 121 LTSLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR 164
           LTSLDRALLQRHLLSRMD+LRGFVLMPEDER+GFCRVLL+D+TR
Sbjct: 121 LTSLDRALLQRHLLSRMDDLRGFVLMPEDERDGFCRVLLRDITR 164

[Close]

BLAST of MELO.jh001565.1 vs. NCBI nr
Match: KAA0040490.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK23472.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 266 bits (679), Expect = 3.08e-86
Identity = 130/162 (80.25%), Postives = 145/162 (89.51%), Query Frame = 0


Query: 3   RFAETFIDVGSNEPGGYDGFDIEDGNEDFPLVYRQRIDLSRNDVRTSRPSCASEGRTGSS 62
           R A+TF+DVGSNEPGGYD FD+ DGNE+FP+VY QRIDLS+ DVR SRP   SEGRTGSS
Sbjct: 167 RLAKTFVDVGSNEPGGYDIFDMGDGNEEFPIVYSQRIDLSQKDVRASRPYRTSEGRTGSS 226

Query: 63  GSKRTRGSPREVDVEGIHLALDQTNEQLRMIAEWPARVLANDNHVRTKFFHILHEMSELT 122
           GSKR RGS R++DV+GIHLALDQTNEQ+R+IAEWPA  LANDNHVRT+FF IL EM ELT
Sbjct: 227 GSKRKRGSQRDLDVQGIHLALDQTNEQVRIIAEWPAGALANDNHVRTEFFRILREMPELT 286

Query: 123 SLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR 164
           SLDRALLQRHLLSRMD+LRGFVLMPEDE EGFCRVLL+D+TR
Sbjct: 287 SLDRALLQRHLLSRMDDLRGFVLMPEDESEGFCRVLLRDITR 328

[Close]

BLAST of MELO.jh001565.1 vs. NCBI nr
Match: KAA0050293.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 265 bits (676), Expect = 4.38e-86
Identity = 133/163 (81.60%), Postives = 145/163 (88.96%), Query Frame = 0


Query: 3   RFAETFIDVGSNEPG-GYDGFDIEDGNEDFPLVYRQRIDLSRNDVRTSRPSCASEGRTGS 62
           RFAETF DVGSNEPG GYD FD+ DGNEDFPLVY Q +D+S++DVR SRPS ASEGRTGS
Sbjct: 144 RFAETFADVGSNEPGDGYDRFDMGDGNEDFPLVYSQGVDISQDDVRASRPSRASEGRTGS 203

Query: 63  SGSKRTRGSPREVDVEGIHLALDQTNEQLRMIAEWPARVLANDNHVRTKFFHILHEMSEL 122
           SGSKR RGS R+ ++E IHLALDQTNEQLR IAEWPAR LANDNHVRT+FF IL EM EL
Sbjct: 204 SGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPEL 263

Query: 123 TSLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR 164
           TSLDRALLQRHLLSRMD+LRGFVLMPEDEREGFCRVLL+D+ R
Sbjct: 264 TSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER 306

[Close]

BLAST of MELO.jh001565.1 vs. ExPASy TrEMBL
Match: A0A5A7TF42 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001510 PE=4 SV=1)

HSP 1 Score: 300 bits (767), Expect = 1.89e-101
Identity = 150/163 (92.02%), Postives = 154/163 (94.48%), Query Frame = 0


Query: 2   SRFAETFIDVGSNEPGGYDGFDIEDGNEDFPLVYRQRIDLSRNDVRTSRPSCASEGRTGS 61
           SRFAETFIDVGSN+PGGYDGFDI DGNEDFP VYRQ IDLS+N+VRTSRPS ASEGRT S
Sbjct: 60  SRFAETFIDVGSNKPGGYDGFDIGDGNEDFPPVYRQGIDLSQNNVRTSRPSRASEGRTRS 119

Query: 62  SGSKRTRGSPREVDVEGIHLALDQTNEQLRMIAEWPARVLANDNHVRTKFFHILHEMSEL 121
           SGSKRTRGSPR+VDVEGIHLALDQTNEQLRMI EWPARVL NDN VRTKFF ILHEMSEL
Sbjct: 120 SGSKRTRGSPRDVDVEGIHLALDQTNEQLRMIVEWPARVLVNDNRVRTKFFRILHEMSEL 179

Query: 122 TSLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR 164
           TSLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR
Sbjct: 180 TSLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR 222

[Close]

BLAST of MELO.jh001565.1 vs. ExPASy TrEMBL
Match: A0A5A7UVE5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001500 PE=4 SV=1)

HSP 1 Score: 277 bits (709), Expect = 4.15e-92
Identity = 137/162 (84.57%), Postives = 147/162 (90.74%), Query Frame = 0


Query: 3   RFAETFIDVGSNEPGGYDGFDIEDGNEDFPLVYRQRIDLSRNDVRTSRPSCASEGRTGSS 62
           +FAETF DVGSNEPGGY+GFD+ DGNE+FP VY Q ID+S +DVR SRPSCASEGRTGSS
Sbjct: 96  QFAETFTDVGSNEPGGYEGFDMADGNEEFPSVYSQGIDMSLDDVRASRPSCASEGRTGSS 155

Query: 63  GSKRTRGSPREVDVEGIHLALDQTNEQLRMIAEWPARVLANDNHVRTKFFHILHEMSELT 122
           GSKR RGS REVDVEGIHLALDQTNEQLRMI EWPARVL NDNHVRT+FF IL EM ELT
Sbjct: 156 GSKRKRGSQREVDVEGIHLALDQTNEQLRMIEEWPARVLVNDNHVRTEFFRILCEMPELT 215

Query: 123 SLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR 164
           SLDRALLQRHLLSRMD+LRGF+LMPEDEREGF RVLL+DMTR
Sbjct: 216 SLDRALLQRHLLSRMDDLRGFILMPEDEREGFSRVLLRDMTR 257

[Close]

BLAST of MELO.jh001565.1 vs. ExPASy TrEMBL
Match: A0A5D3E168 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold669G00050 PE=4 SV=1)

HSP 1 Score: 270 bits (689), Expect = 1.98e-90
Identity = 134/164 (81.71%), Postives = 145/164 (88.41%), Query Frame = 0


Query: 1   MSRFAETFIDVGSNEPGGYDGFDIEDGNEDFPLVYRQRIDLSRNDVRTSRPSCASEGRTG 60
           M RFAETF+DVGSNEPGGYDGFD+ D NE+FP VY Q IDLS++DV  SRPS ASEGRT 
Sbjct: 1   MGRFAETFVDVGSNEPGGYDGFDMGDRNEEFPPVYSQGIDLSQDDVHASRPSRASEGRTE 60

Query: 61  SSGSKRTRGSPREVDVEGIHLALDQTNEQLRMIAEWPARVLANDNHVRTKFFHILHEMSE 120
           SSGSKR RGS REVDVEGIHLALDQTN QL+MIAEWPA  L NDNHVRT+FF IL EM E
Sbjct: 61  SSGSKRKRGSQREVDVEGIHLALDQTNNQLKMIAEWPACALVNDNHVRTEFFRILREMPE 120

Query: 121 LTSLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR 164
           LTSLDRALLQRHLLSRMD+LRGFVLMPEDER+GFCRVLL+D+TR
Sbjct: 121 LTSLDRALLQRHLLSRMDDLRGFVLMPEDERDGFCRVLLRDITR 164

[Close]

BLAST of MELO.jh001565.1 vs. ExPASy TrEMBL
Match: A0A5A7TB06 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00390 PE=3 SV=1)

HSP 1 Score: 266 bits (679), Expect = 1.49e-86
Identity = 130/162 (80.25%), Postives = 145/162 (89.51%), Query Frame = 0


Query: 3   RFAETFIDVGSNEPGGYDGFDIEDGNEDFPLVYRQRIDLSRNDVRTSRPSCASEGRTGSS 62
           R A+TF+DVGSNEPGGYD FD+ DGNE+FP+VY QRIDLS+ DVR SRP   SEGRTGSS
Sbjct: 167 RLAKTFVDVGSNEPGGYDIFDMGDGNEEFPIVYSQRIDLSQKDVRASRPYRTSEGRTGSS 226

Query: 63  GSKRTRGSPREVDVEGIHLALDQTNEQLRMIAEWPARVLANDNHVRTKFFHILHEMSELT 122
           GSKR RGS R++DV+GIHLALDQTNEQ+R+IAEWPA  LANDNHVRT+FF IL EM ELT
Sbjct: 227 GSKRKRGSQRDLDVQGIHLALDQTNEQVRIIAEWPAGALANDNHVRTEFFRILREMPELT 286

Query: 123 SLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR 164
           SLDRALLQRHLLSRMD+LRGFVLMPEDE EGFCRVLL+D+TR
Sbjct: 287 SLDRALLQRHLLSRMDDLRGFVLMPEDESEGFCRVLLRDITR 328

[Close]

BLAST of MELO.jh001565.1 vs. ExPASy TrEMBL
Match: A0A5A7U308 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00120 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 2.12e-86
Identity = 133/163 (81.60%), Postives = 145/163 (88.96%), Query Frame = 0


Query: 3   RFAETFIDVGSNEPG-GYDGFDIEDGNEDFPLVYRQRIDLSRNDVRTSRPSCASEGRTGS 62
           RFAETF DVGSNEPG GYD FD+ DGNEDFPLVY Q +D+S++DVR SRPS ASEGRTGS
Sbjct: 144 RFAETFADVGSNEPGDGYDRFDMGDGNEDFPLVYSQGVDISQDDVRASRPSRASEGRTGS 203

Query: 63  SGSKRTRGSPREVDVEGIHLALDQTNEQLRMIAEWPARVLANDNHVRTKFFHILHEMSEL 122
           SGSKR RGS R+ ++E IHLALDQTNEQLR IAEWPAR LANDNHVRT+FF IL EM EL
Sbjct: 204 SGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPEL 263

Query: 123 TSLDRALLQRHLLSRMDNLRGFVLMPEDEREGFCRVLLQDMTR 164
           TSLDRALLQRHLLSRMD+LRGFVLMPEDEREGFCRVLL+D+ R
Sbjct: 264 TSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER 306

The following BLAST results are available for this feature:

BLAST of MELO.jh001565.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041940.1	3.90e-101	92.02	retrotransposon protein [Cucumis melo var. makuwa] >TYK17875.1 retrotransposon p...	[more]
KAA0059933.1	8.58e-92	84.57	retrotransposon protein [Cucumis melo var. makuwa] >TYK24879.1 retrotransposon p...	[more]
TYK29656.1	4.09e-90	81.71	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0040490.1	3.08e-86	80.25	retrotransposon protein [Cucumis melo var. makuwa] >TYK23472.1 retrotransposon p...	[more]
KAA0050293.1	4.38e-86	81.60	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh001565.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh001565.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TF42	1.89e-101	92.02	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UVE5	4.15e-92	84.57	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E168	1.98e-90	81.71	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TB06	1.49e-86	80.25	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U308	2.12e-86	81.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO.jh001565.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh001565.1.t1	MELO.jh001565.1.t1	mRNA