MELO.jh001348.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh001348.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPre-mRNA-splicing factor SPF27-like protein
Locationchr01: 17645002 .. 17645263 (+)
RNA-Seq ExpressionMELO.jh001348.1
SyntenyMELO.jh001348.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATTGTTATTAGAATGCAAAAAATAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAACCGTGAAAGAAAATTCCATCAAGTAAATAGCATCCTCGTAATTCATACTACAATAATAGAGTAGAGGTTAATTAGCATTTTGTATTTAATCTAGTATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAACAAGAATCTGGGGATGAATTTGATTATCAGGGAGATAAACCTAAAATTTGTATTTAGTG

mRNA sequence

ATGTTGATTGTTATTAGAATGCAAAAAATAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAACCGTGAAAGAAAATTCCATCAAGTAAATAGCATCCTCGTAATTCATACTACAATAATAGAGTAGAGGTTAATTAGCATTTTGTATTTAATCTAGTATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAACAAGAATCTGGGGATGAATTTGATTATCAGGGAGATAAACCTAAAATTTGTATTTAGTG

Coding sequence (CDS)

ATGTTGATTGTTATTAGAATGCAAAAAATAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAACCGTGAAAGAAAATTCCATCAAGTAAATAGCATCCTCGTAATTCATACTACAATAATAGAGTAG

Protein sequence

MLIVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIHTTIIE
Homology
BLAST of MELO.jh001348.1 vs. NCBI nr
Match: TYJ99022.1 (pre-mRNA-splicing factor SPF27-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 1.60e-08
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 3   IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIH 37
           ++ RMQK+AQEQNEKIEKVNRERKFHQV+SI VIH
Sbjct: 167 LLSRMQKLAQEQNEKIEKVNRERKFHQVSSIPVIH 201

BLAST of MELO.jh001348.1 vs. NCBI nr
Match: TYJ99755.1 (hypothetical protein E5676_scaffold252G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 51.6 bits (122), Expect = 4.26e-07
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 3  IVIRMQKIAQEQNEKIEKVNRERKFHQVNS 32
          ++ RMQK+AQEQNEKIEKVNRERKFHQV +
Sbjct: 12 LITRMQKLAQEQNEKIEKVNRERKFHQVEA 41

BLAST of MELO.jh001348.1 vs. NCBI nr
Match: KAG7012138.1 (Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 52.0 bits (123), Expect = 5.53e-07
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 2  LIVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIH 37
          L+ +R+Q++AQEQNEK+EKVNRERKFHQ N+   +H
Sbjct: 28 LVTVRLQQLAQEQNEKMEKVNRERKFHQQNAASELH 63

BLAST of MELO.jh001348.1 vs. NCBI nr
Match: XP_004512670.1 (pre-mRNA-splicing factor SPF27 homolog [Cicer arietinum])

HSP 1 Score: 50.8 bits (120), Expect = 1.51e-06
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 2  LIVIRMQKIAQEQNEKIEKVNRERKFHQVNS 32
          L + RMQK+AQEQNEKIEKVNRERK+HQ N+
Sbjct: 8  LSIFRMQKLAQEQNEKIEKVNRERKYHQQNT 38

BLAST of MELO.jh001348.1 vs. NCBI nr
Match: KAG6584331.1 (Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019921.1 Pre-mRNA-splicing factor SPF27-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 52.8 bits (125), Expect = 2.02e-06
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 3   IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIH 37
           ++ RMQK+AQEQNEKIEKVNRERKFHQ N+   +H
Sbjct: 167 LLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELH 201

BLAST of MELO.jh001348.1 vs. ExPASy Swiss-Prot
Match: Q949S9 (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 PE=1 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 5.2e-04
Identity = 20/28 (71.43%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 2   LIVIRMQKIAQEQNEKIEKVNRERKFHQ 30
           + + RMQ++AQEQNE+IEKVNRERK+HQ
Sbjct: 164 VFLTRMQRLAQEQNEEIEKVNRERKYHQ 191

BLAST of MELO.jh001348.1 vs. ExPASy TrEMBL
Match: A0A5D3BGY3 (Pre-mRNA-splicing factor SPF27-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002260 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.76e-09
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 0

Query: 3   IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIH 37
           ++ RMQK+AQEQNEKIEKVNRERKFHQV+SI VIH
Sbjct: 167 LLSRMQKLAQEQNEKIEKVNRERKFHQVSSIPVIH 201

BLAST of MELO.jh001348.1 vs. ExPASy TrEMBL
Match: A0A5D3BN71 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold252G00330 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.06e-07
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 0

Query: 3  IVIRMQKIAQEQNEKIEKVNRERKFHQVNS 32
          ++ RMQK+AQEQNEKIEKVNRERKFHQV +
Sbjct: 12 LITRMQKLAQEQNEKIEKVNRERKFHQVEA 41

BLAST of MELO.jh001348.1 vs. ExPASy TrEMBL
Match: A0A1S2Z055 (pre-mRNA-splicing factor SPF27 homolog OS=Cicer arietinum OX=3827 GN=LOC101493280 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.29e-07
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0

Query: 2  LIVIRMQKIAQEQNEKIEKVNRERKFHQVNS 32
          L + RMQK+AQEQNEKIEKVNRERK+HQ N+
Sbjct: 8  LSIFRMQKLAQEQNEKIEKVNRERKYHQQNT 38

BLAST of MELO.jh001348.1 vs. ExPASy TrEMBL
Match: A0A6J1KLZ4 (pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita maxima OX=3661 GN=LOC111495390 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.77e-07
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 3   IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIH 37
           ++ RMQK+AQEQNEKIEKVNRERKFHQ N+   +H
Sbjct: 167 LLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELH 201

BLAST of MELO.jh001348.1 vs. ExPASy TrEMBL
Match: A0A6J1EDE4 (pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431514 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.77e-07
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 3   IVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIH 37
           ++ RMQK+AQEQNEKIEKVNRERKFHQ N+   +H
Sbjct: 167 LLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELH 201

BLAST of MELO.jh001348.1 vs. TAIR 10
Match: AT3G18165.1 (modifier of snc1,4 )

HSP 1 Score: 43.9 bits (102), Expect = 3.7e-05
Identity = 20/28 (71.43%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 2   LIVIRMQKIAQEQNEKIEKVNRERKFHQ 30
           + + RMQ++AQEQNE+IEKVNRERK+HQ
Sbjct: 164 VFLTRMQRLAQEQNEEIEKVNRERKYHQ 191

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYJ99022.11.60e-0882.86pre-mRNA-splicing factor SPF27-like protein [Cucumis melo var. makuwa][more]
TYJ99755.14.26e-0780.00hypothetical protein E5676_scaffold252G00330 [Cucumis melo var. makuwa][more]
KAG7012138.15.53e-0763.89Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma sub... [more]
XP_004512670.11.51e-0677.42pre-mRNA-splicing factor SPF27 homolog [Cicer arietinum][more]
KAG6584331.12.02e-0671.43Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma sub... [more]
Match NameE-valueIdentityDescription
Q949S95.2e-0471.43Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 P... [more]
Match NameE-valueIdentityDescription
A0A5D3BGY37.76e-0982.86Pre-mRNA-splicing factor SPF27-like protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3BN712.06e-0780.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S2Z0557.29e-0777.42pre-mRNA-splicing factor SPF27 homolog OS=Cicer arietinum OX=3827 GN=LOC10149328... [more]
A0A6J1KLZ49.77e-0771.43pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114953... [more]
A0A6J1EDE49.77e-0771.43pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143... [more]
Match NameE-valueIdentityDescription
AT3G18165.13.7e-0571.43modifier of snc1,4 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 4..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh001348.1.t1MELO.jh001348.1.t1mRNA