MELO.jh001348.1 (gene) Melon (Harukei-3) v1.41
Overview
Sequences
The following sequences are available for this feature:
Legend: exonstart_codonCDSpolypeptidestop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTGATTGTTATTAGAATGCAAAAAATAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAACCGTGAAAGAAAATTCCATCAAGTAAATAGCATCCTCGTAATTCATACTACAATAATAGAGTAGAGGTTAATTAGCATTTTGTATTTAATCTAGTATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAACAAGAATCTGGGGATGAATTTGATTATCAGGGAGATAAACCTAAAATTTGTATTTAGTG ATGTTGATTGTTATTAGAATGCAAAAAATAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAACCGTGAAAGAAAATTCCATCAAGTAAATAGCATCCTCGTAATTCATACTACAATAATAGAGTAGAGGTTAATTAGCATTTTGTATTTAATCTAGTATTACAGGTAGAAGCTGAGCACAAGGAGGAGGAAGAATCTGAACAAGAATCTGGGGATGAATTTGATTATCAGGGAGATAAACCTAAAATTTGTATTTAGTG ATGTTGATTGTTATTAGAATGCAAAAAATAGCTCAGGAACAAAATGAGAAGATTGAAAAAGTGAACCGTGAAAGAAAATTCCATCAAGTAAATAGCATCCTCGTAATTCATACTACAATAATAGAGTAG MLIVIRMQKIAQEQNEKIEKVNRERKFHQVNSILVIHTTIIE Homology
BLAST of MELO.jh001348.1 vs. NCBI nr
Match: TYJ99022.1 (pre-mRNA-splicing factor SPF27-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 58.5 bits (140), Expect = 1.60e-08 Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 0
BLAST of MELO.jh001348.1 vs. NCBI nr
Match: TYJ99755.1 (hypothetical protein E5676_scaffold252G00330 [Cucumis melo var. makuwa]) HSP 1 Score: 51.6 bits (122), Expect = 4.26e-07 Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 0
BLAST of MELO.jh001348.1 vs. NCBI nr
Match: KAG7012138.1 (Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 52.0 bits (123), Expect = 5.53e-07 Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 0
BLAST of MELO.jh001348.1 vs. NCBI nr
Match: XP_004512670.1 (pre-mRNA-splicing factor SPF27 homolog [Cicer arietinum]) HSP 1 Score: 50.8 bits (120), Expect = 1.51e-06 Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0
BLAST of MELO.jh001348.1 vs. NCBI nr
Match: KAG6584331.1 (Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019921.1 Pre-mRNA-splicing factor SPF27-like protein [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 52.8 bits (125), Expect = 2.02e-06 Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0
BLAST of MELO.jh001348.1 vs. ExPASy Swiss-Prot
Match: Q949S9 (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 PE=1 SV=1) HSP 1 Score: 43.9 bits (102), Expect = 5.2e-04 Identity = 20/28 (71.43%), Postives = 26/28 (92.86%), Query Frame = 0
BLAST of MELO.jh001348.1 vs. ExPASy TrEMBL
Match: A0A5D3BGY3 (Pre-mRNA-splicing factor SPF27-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002260 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 7.76e-09 Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 0
BLAST of MELO.jh001348.1 vs. ExPASy TrEMBL
Match: A0A5D3BN71 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold252G00330 PE=4 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 2.06e-07 Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 0
BLAST of MELO.jh001348.1 vs. ExPASy TrEMBL
Match: A0A1S2Z055 (pre-mRNA-splicing factor SPF27 homolog OS=Cicer arietinum OX=3827 GN=LOC101493280 PE=4 SV=1) HSP 1 Score: 50.8 bits (120), Expect = 7.29e-07 Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0
BLAST of MELO.jh001348.1 vs. ExPASy TrEMBL
Match: A0A6J1KLZ4 (pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita maxima OX=3661 GN=LOC111495390 PE=4 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 9.77e-07 Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0
BLAST of MELO.jh001348.1 vs. ExPASy TrEMBL
Match: A0A6J1EDE4 (pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431514 PE=4 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 9.77e-07 Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0
BLAST of MELO.jh001348.1 vs. TAIR 10
Match: AT3G18165.1 (modifier of snc1,4 ) HSP 1 Score: 43.9 bits (102), Expect = 3.7e-05 Identity = 20/28 (71.43%), Postives = 26/28 (92.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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