MELO.jh001251.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh001251.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	glycine-rich protein 2-like
Location	chr01: 16550172 .. 16551444 (-)
RNA-Seq Expression	MELO.jh001251.1
Synteny	MELO.jh001251.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGGGCGCTCTTCCCGTTTCCAAGCTTTTCGATTCACAAAGTACGTTTTTTTTTTCTTCTTATTTATATATATATATAAACCCTTTTTCTCTCAAATCTAGAGAGAGAAATTTTGGTGATTAGGGTTTTTCAGTTGTTGGGTTTTCTTTTGTGAAAGAAGACGAGATCGAGAAAATGGGTGAAAGGGTTAGTGGAAAAGTTAAGTGGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGTGGTGAAGATCTTTTCGTTCATCAATCCTCCATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCAGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGCGGAGGAGGCGGCGGCGGCGGAGGTGGAGGTGGCTACTCCAGTGGAGGTGGTTATGGAGGAGGAGGCGGTGGTGGAAGGGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGAAGTGGCGGTGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGCGGGTATGGTGGTGGGGGTTATGGAGGCGGTGGCGGCGGCGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGTGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGATCCTCGCGTAAATTGGTGACTAGCAAGTCAATTTACTTTTGTTTGCTTCAATCTGGGGGTGTTTTGTTCGGTTTTTCTTTTCCTTTCTATCTCAGTTTTGATCTACTGAGATCTGTAAGGTCATCTTTTAATAGGATTTGAGTAGTAGCCTTTTTCTCTTTTTTGTCATCTATGGATTTCCAATCAGTTTAGTATCTATCTTTTGGTTGTTGGGTGTTGATGATTATGTTTGTTTGATGGATTTTAGGGTATTTTATCAGCTATCCTTAGAAAAAGAGATGATCTATGGAGGAGAGATGACTACCTTCCTTTGATTTCTCTGTTTCTTTAACTGTTGATACAAGTATTTTCATATACAATGCCTTCTGGTTTTCAATGAATGAATGGATCCATCTCTGATTTCTTCTGTAACTACACGACTTAAAATCCTTTTTCTTTCCAGTTAATTTCAATTGAAAATATCTCTCTTGATTGAAT

mRNA sequence

ATGACGGGGCGCTCTTCCCGTTTCCAAGCTTTTCGATTCACAAATGGAAAAGTTAAGTGGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGTGGTGAAGATCTTTTCGTTCATCAATCCTCCATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCAGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGCGGAGGAGGCGGCGGCGGCGGAGGTGGAGGTGGCTACTCCAGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGTGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGATCCTCGCGTAAATTGGTGACTAGCAAGTCAATTTACTTTTGTTTGCTTCAATCTGGGGGTGTTTTGTTCGGTTTTTCTTTTCCTTTCTATCTCAGTTTTGATCTACTGAGATCTGTAAGGTCATCTTTTAATAGGATTTGAGTAGTAGCCTTTTTCTCTTTTTTGTCATCTATGGATTTCCAATCAGTTTAGTATCTATCTTTTGGTTGTTGGGTGTTGATGATTATGTTTGTTTGATGGATTTTAGGGTATTTTATCAGCTATCCTTAGAAAAAGAGATGATCTATGGAGGAGAGATGACTACCTTCCTTTGATTTCTCTGTTTCTTTAACTGTTGATACAAGTATTTTCATATACAATGCCTTCTGGTTTTCAATGAATGAATGGATCCATCTCTGATTTCTTCTGTAACTACACGACTTAAAATCCTTTTTCTTTCCAGTTAATTTCAATTGAAAATATCTCTCTTGATTGAAT

Coding sequence (CDS)

ATGACGGGGCGCTCTTCCCGTTTCCAAGCTTTTCGATTCACAAATGGAAAAGTTAAGTGGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGTGGTGAAGATCTTTTCGTTCATCAATCCTCCATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCAGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGCGGAGGAGGCGGCGGCGGCGGAGGTGGAGGTGGCTACTCCAGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGTGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGA

Protein sequence

MTGRSSRFQAFRFTNGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGYSSGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCGESGHFARECPSSGR

Homology

[Close]

BLAST of MELO.jh001251.1 vs. NCBI nr
Match: XP_008448117.2 (PREDICTED: LOW QUALITY PROTEIN: glycine-rich protein 2-like, partial [Cucumis melo])

HSP 1 Score: 250 bits (639), Expect = 4.30e-82
Identity = 142/194 (73.20%), Postives = 142/194 (73.20%), Query Frame = 0


Query: 21  FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 80
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 81  GEASVQGSRGGGGGGGGGGGGGYSSGGG-------------------------------- 140
           GEASVQGSRGGGGGGGGGGGGGYSSGGG                                
Sbjct: 61  GEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGXRGGGGYGFNGGSGGGGRGGYG 120

Query: 141 --------------------ACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG 162
                               ACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG
Sbjct: 121 GGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG 180

[Close]

BLAST of MELO.jh001251.1 vs. NCBI nr
Match: XP_038888820.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 249 bits (637), Expect = 1.21e-81
Identity = 143/199 (71.86%), Postives = 144/199 (72.36%), Query Frame = 0


Query: 15  NGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA 74
           +GKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA
Sbjct: 6   SGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA 65

Query: 75  VDVTGPGEASVQGSRGGGGGGGGG------------------------------------ 134
           VDVTGPGEASVQGSRGGG GGGGG                                    
Sbjct: 66  VDVTGPGEASVQGSRGGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRG 125

Query: 135 --------------GGGGYSSGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGG-N 162
                         GGGG   GGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGG N
Sbjct: 126 GYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGGN 185

[Close]

BLAST of MELO.jh001251.1 vs. NCBI nr
Match: XP_011658593.1 (glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_020571 [Cucumis sativus])

HSP 1 Score: 247 bits (631), Expect = 1.30e-80
Identity = 147/207 (71.01%), Postives = 148/207 (71.50%), Query Frame = 0


Query: 15  NGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA 74
           +GKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA
Sbjct: 6   SGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA 65

Query: 75  VDVTGPGEASVQGSRGGGGGGGG-GGGGGYSSGGG------------------------- 134
           VDVTGPGEASVQGSRGGGGGGGG GGGGGYSSGGG                         
Sbjct: 66  VDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGGSGG 125

Query: 135 ----------------------------ACFKCGETGHMARDCYQSGSQGGG-DRYGGGG 162
                                       ACFKCGETGHMARDCYQSGSQGGG DRYGGGG
Sbjct: 126 GGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDRYGGGG 185

[Close]

BLAST of MELO.jh001251.1 vs. NCBI nr
Match: XP_022952475.1 (glycine-rich protein 2-like [Cucurbita moschata])

HSP 1 Score: 242 bits (618), Expect = 4.24e-79
Identity = 134/175 (76.57%), Postives = 140/175 (80.00%), Query Frame = 0


Query: 15  NGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA 74
           +GKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+DGR KA
Sbjct: 6   SGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRCKA 65

Query: 75  VDVTGPGEASVQGSRGGGGGGGGG-----------------------GGGGYSSGGGA-- 134
           +DVTGPGE+SVQGSRGGGGGGGG                        GGGGY  GGG   
Sbjct: 66  IDVTGPGESSVQGSRGGGGGGGGERGSRGGGYGFNGGGGGGRGGYGRGGGGYGGGGGGGG 125

Query: 135 CFKCGETGHMARDCYQSGSQGGGDRYGGGGGGG--NCYSCGESGHFARECPSSGR 162
           CFKCGETGHMARDCYQ GSQGGGDRYGGGGGGG  NCYSCGESGHFAR+C SSGR
Sbjct: 126 CFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGNCYSCGESGHFARDCQSSGR 180

[Close]

BLAST of MELO.jh001251.1 vs. NCBI nr
Match: XP_022928350.1 (glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015270.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243 bits (619), Expect = 6.22e-79
Identity = 139/197 (70.56%), Postives = 144/197 (73.10%), Query Frame = 0


Query: 15  NGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA 74
           +GKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+DGRSKA
Sbjct: 6   SGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEADGRSKA 65

Query: 75  VDVTGPGEASVQGSRGGGGGGGG----GGGGGYSSGGG---------------------- 134
           VDVTGPGE+SVQGSRGGGGGGGG    GGGGGY  GGG                      
Sbjct: 66  VDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGGGRGSY 125

Query: 135 ---------------------ACFKCGETGHMARDCYQSGSQGGGDRY--GGGGGGGNCY 162
                                ACFKCGE GHMARDCYQSGSQGGGDRY  GGGGGGGNCY
Sbjct: 126 GGSGGGGYGGGYGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGGGGGGNCY 185

[Close]

BLAST of MELO.jh001251.1 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-45
Identity = 112/204 (54.90%), Postives = 122/204 (59.80%), Query Frame = 0


Query: 16  GKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAV 75
           G VKWFSDQKG+GFI+P+DGGEDLFVHQS IRS+GFRSL  GE VEF +E+  DGR+KAV
Sbjct: 11  GTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGRTKAV 70

Query: 76  DVTGPGEASVQGSRGGGGGGGGGGGGGY-------------------------------- 135
           DVTGP  A+VQG RGGGGGGGG GGGGY                                
Sbjct: 71  DVTGPDGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGGGGGYG 130

Query: 136 ----------------------SSGGGACFKCGETGHMARDCYQSGSQGGGDRY---GGG 163
                                 S GG  CFKCGE+GH ARDC QSG  GGG R+   GGG
Sbjct: 131 GGSRYGGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGGGGRFGGGGGG 190

[Close]

BLAST of MELO.jh001251.1 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.1e-39
Identity = 102/191 (53.40%), Postives = 118/191 (61.78%), Query Frame = 0


Query: 16  GKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAV 75
           G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E +++ R KA+
Sbjct: 13  GSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNRPKAI 72

Query: 76  DVTGPGEASVQGSRGGG------------------GGGGGGGGGGYSS------GGGACF 135
           DV+GP  A VQG+ GGG                  GGG GGGGGGY        GG  C+
Sbjct: 73  DVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGGSDCY 132

Query: 136 KCGETGHMARDCYQ--------SGSQGGGDRY------------GGGGGGGNCYSCGESG 163
           KCGE GHMARDC +         G  GGG  Y            GGGGGGG+CYSCGESG
Sbjct: 133 KCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGESG 192

[Close]

BLAST of MELO.jh001251.1 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 5.1e-39
Identity = 102/183 (55.74%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 16  GKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAV 75
           G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ GR KA+
Sbjct: 17  GTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRPKAI 76

Query: 76  DVTGPGEASVQGSRG-----------GGGGGGGGGGGGYSSGGG---------------- 135
           +V+GP  A VQG+ G           GGGGG GGG GG S GGG                
Sbjct: 77  EVSGPDGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGRGSGGRGGGGGDN 136

Query: 136 ACFKCGETGHMARDCYQSG----SQGGGDRYGGGGGGG------NCYSCGESGHFARECP 162
           +CFKCGE GHMAR+C Q G      GGG RYG GGGGG      +CYSCGESGHFAR+C 
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCT 196

[Close]

BLAST of MELO.jh001251.1 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.9e-34
Identity = 95/167 (56.89%), Postives = 110/167 (65.87%), Query Frame = 0


Query: 16  GKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAV 75
           GKV WFSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG++KA+
Sbjct: 13  GKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKTKAI 72

Query: 76  DVTGPGEASV----QGSRGGG-----------------GGGGG---GGGGGYSSGG-GAC 135
           +VT PG  S+      SRG G                 GG GG   GGGGG  SGG G C
Sbjct: 73  EVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGEC 132

Query: 136 FKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCGESGHFAREC 158
           + CG+ GH ARDC QS   GGG+  GGGGGG  CYSCGE GH A++C
Sbjct: 133 YMCGDVGHFARDCRQS---GGGNSGGGGGGGRPCYSCGEVGHLAKDC 176

[Close]

BLAST of MELO.jh001251.1 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.3e-31
Identity = 83/160 (51.88%), Postives = 108/160 (67.50%), Query Frame = 0


Query: 5   SSRFQAFRFTNGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLI 64
           +S  Q+   + GKV WF+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I
Sbjct: 2   ASEDQSAARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAI 61

Query: 65  EAESDGRSKAVDVTGPGEASVQ---GSRGGGGGGGGGGGGGYSSGGGACFKCGETGHMAR 124
              SDG++KAV+VT PG  S++    SRG G   GGGG G        C+ CGE GH+++
Sbjct: 62  TQGSDGKTKAVNVTAPGGGSLKKENNSRGNGARRGGGGSG--------CYNCGELGHISK 121

Query: 125 DCYQSGSQGGGDRYGGGGGGGNCYSCGESGHFARECPSSG 162
           DC   G  GGG+R   GG G  CY+CG++GHFAR+C S+G
Sbjct: 122 DCGIGGGGGGGERRSRGGEG--CYNCGDTGHFARDCTSAG 151

[Close]

BLAST of MELO.jh001251.1 vs. ExPASy TrEMBL
Match: A0A1S3BIY4 (LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC103490405 PE=4 SV=1)

HSP 1 Score: 250 bits (639), Expect = 2.08e-82
Identity = 142/194 (73.20%), Postives = 142/194 (73.20%), Query Frame = 0


Query: 21  FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 80
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 81  GEASVQGSRGGGGGGGGGGGGGYSSGGG-------------------------------- 140
           GEASVQGSRGGGGGGGGGGGGGYSSGGG                                
Sbjct: 61  GEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGXRGGGGYGFNGGSGGGGRGGYG 120

Query: 141 --------------------ACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG 162
                               ACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG
Sbjct: 121 GGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG 180

[Close]

BLAST of MELO.jh001251.1 vs. ExPASy TrEMBL
Match: A0A0A0K4M5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1)

HSP 1 Score: 247 bits (631), Expect = 6.28e-81
Identity = 147/207 (71.01%), Postives = 148/207 (71.50%), Query Frame = 0


Query: 15  NGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA 74
           +GKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA
Sbjct: 6   SGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA 65

Query: 75  VDVTGPGEASVQGSRGGGGGGGG-GGGGGYSSGGG------------------------- 134
           VDVTGPGEASVQGSRGGGGGGGG GGGGGYSSGGG                         
Sbjct: 66  VDVTGPGEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGGSGG 125

Query: 135 ----------------------------ACFKCGETGHMARDCYQSGSQGGG-DRYGGGG 162
                                       ACFKCGETGHMARDCYQSGSQGGG DRYGGGG
Sbjct: 126 GGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDRYGGGG 185

[Close]

BLAST of MELO.jh001251.1 vs. ExPASy TrEMBL
Match: A0A6J1GLV7 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 SV=1)

HSP 1 Score: 242 bits (618), Expect = 2.05e-79
Identity = 134/175 (76.57%), Postives = 140/175 (80.00%), Query Frame = 0


Query: 15  NGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA 74
           +GKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+DGR KA
Sbjct: 6   SGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRCKA 65

Query: 75  VDVTGPGEASVQGSRGGGGGGGGG-----------------------GGGGYSSGGGA-- 134
           +DVTGPGE+SVQGSRGGGGGGGG                        GGGGY  GGG   
Sbjct: 66  IDVTGPGESSVQGSRGGGGGGGGERGSRGGGYGFNGGGGGGRGGYGRGGGGYGGGGGGGG 125

Query: 135 CFKCGETGHMARDCYQSGSQGGGDRYGGGGGGG--NCYSCGESGHFARECPSSGR 162
           CFKCGETGHMARDCYQ GSQGGGDRYGGGGGGG  NCYSCGESGHFAR+C SSGR
Sbjct: 126 CFKCGETGHMARDCYQGGSQGGGDRYGGGGGGGGGNCYSCGESGHFARDCQSSGR 180

[Close]

BLAST of MELO.jh001251.1 vs. ExPASy TrEMBL
Match: A0A6J1ERG9 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 SV=1)

HSP 1 Score: 243 bits (619), Expect = 3.01e-79
Identity = 139/197 (70.56%), Postives = 144/197 (73.10%), Query Frame = 0


Query: 15  NGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA 74
           +GKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+DGRSKA
Sbjct: 6   SGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEADGRSKA 65

Query: 75  VDVTGPGEASVQGSRGGGGGGGG----GGGGGYSSGGG---------------------- 134
           VDVTGPGE+SVQGSRGGGGGGGG    GGGGGY  GGG                      
Sbjct: 66  VDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGGGRGSY 125

Query: 135 ---------------------ACFKCGETGHMARDCYQSGSQGGGDRY--GGGGGGGNCY 162
                                ACFKCGE GHMARDCYQSGSQGGGDRY  GGGGGGGNCY
Sbjct: 126 GGSGGGGYGGGYGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGGGGGGNCY 185

[Close]

BLAST of MELO.jh001251.1 vs. ExPASy TrEMBL
Match: A0A6J1JLC0 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=1)

HSP 1 Score: 241 bits (614), Expect = 2.05e-78
Identity = 139/202 (68.81%), Postives = 144/202 (71.29%), Query Frame = 0


Query: 15  NGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKA 74
           +GKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+DGRSKA
Sbjct: 6   SGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEADGRSKA 65

Query: 75  VDVTGPGEASVQGSRGGGGGGGG----GGGGGYSSGGG---------------------- 134
           VDVTGPGE+SVQGSRGGGGGGGG    GGGGGY  GGG                      
Sbjct: 66  VDVTGPGESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGGGRGLY 125

Query: 135 ----------------------ACFKCGETGHMARDCYQSGSQGGGDRY------GGGGG 162
                                 ACFKCGE GHMARDCYQSGSQGGGDRY      GGGGG
Sbjct: 126 GGSGGGGYGGGYGSGGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGGGGGGGG 185

[Close]

BLAST of MELO.jh001251.1 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 162.2 bits (409), Expect = 3.6e-40
Identity = 102/183 (55.74%), Postives = 118/183 (64.48%), Query Frame = 0


Query: 16  GKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAV 75
           G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ GR KA+
Sbjct: 17  GTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRPKAI 76

Query: 76  DVTGPGEASVQGSRG-----------GGGGGGGGGGGGYSSGGG---------------- 135
           +V+GP  A VQG+ G           GGGGG GGG GG S GGG                
Sbjct: 77  EVSGPDGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGRGSGGRGGGGGDN 136

Query: 136 ACFKCGETGHMARDCYQSG----SQGGGDRYGGGGGGG------NCYSCGESGHFARECP 162
           +CFKCGE GHMAR+C Q G      GGG RYG GGGGG      +CYSCGESGHFAR+C 
Sbjct: 137 SCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCT 196

[Close]

BLAST of MELO.jh001251.1 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 162.2 bits (409), Expect = 3.6e-40
Identity = 102/191 (53.40%), Postives = 118/191 (61.78%), Query Frame = 0


Query: 16  GKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAV 75
           G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E +++ R KA+
Sbjct: 13  GSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNRPKAI 72

Query: 76  DVTGPGEASVQGSRGGG------------------GGGGGGGGGGYSS------GGGACF 135
           DV+GP  A VQG+ GGG                  GGG GGGGGGY        GG  C+
Sbjct: 73  DVSGPDGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGGSDCY 132

Query: 136 KCGETGHMARDCYQ--------SGSQGGGDRY------------GGGGGGGNCYSCGESG 163
           KCGE GHMARDC +         G  GGG  Y            GGGGGGG+CYSCGESG
Sbjct: 133 KCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGESG 192

[Close]

BLAST of MELO.jh001251.1 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 146.4 bits (368), Expect = 2.0e-35
Identity = 95/167 (56.89%), Postives = 110/167 (65.87%), Query Frame = 0


Query: 16  GKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAV 75
           GKV WFSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG++KA+
Sbjct: 13  GKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKTKAI 72

Query: 76  DVTGPGEASV----QGSRGGG-----------------GGGGG---GGGGGYSSGG-GAC 135
           +VT PG  S+      SRG G                 GG GG   GGGGG  SGG G C
Sbjct: 73  EVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGEC 132

Query: 136 FKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCGESGHFAREC 158
           + CG+ GH ARDC QS   GGG+  GGGGGG  CYSCGE GH A++C
Sbjct: 133 YMCGDVGHFARDCRQS---GGGNSGGGGGGGRPCYSCGEVGHLAKDC 176

[Close]

BLAST of MELO.jh001251.1 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-32
Identity = 83/160 (51.88%), Postives = 108/160 (67.50%), Query Frame = 0


Query: 5   SSRFQAFRFTNGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLI 64
           +S  Q+   + GKV WF+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I
Sbjct: 2   ASEDQSAARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAI 61

Query: 65  EAESDGRSKAVDVTGPGEASVQ---GSRGGGGGGGGGGGGGYSSGGGACFKCGETGHMAR 124
              SDG++KAV+VT PG  S++    SRG G   GGGG G        C+ CGE GH+++
Sbjct: 62  TQGSDGKTKAVNVTAPGGGSLKKENNSRGNGARRGGGGSG--------CYNCGELGHISK 121

Query: 125 DCYQSGSQGGGDRYGGGGGGGNCYSCGESGHFARECPSSG 162
           DC   G  GGG+R   GG G  CY+CG++GHFAR+C S+G
Sbjct: 122 DCGIGGGGGGGERRSRGGEG--CYNCGDTGHFARDCTSAG 151

The following BLAST results are available for this feature:

BLAST of MELO.jh001251.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448117.2	4.30e-82	73.20	PREDICTED: LOW QUALITY PROTEIN: glycine-rich protein 2-like, partial [Cucumis me...	[more]
XP_038888820.1	1.21e-81	71.86	glycine-rich protein 2-like [Benincasa hispida]	[more]
XP_011658593.1	1.30e-80	71.01	glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_02...	[more]
XP_022952475.1	4.24e-79	76.57	glycine-rich protein 2-like [Cucurbita moschata]	[more]
XP_022928350.1	6.22e-79	70.56	glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain...	[more]

BLAST of MELO.jh001251.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27484	1.2e-45	54.90	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q41188	5.1e-39	53.40	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q38896	5.1e-39	55.74	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q94C69	2.9e-34	56.89	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	2.3e-31	51.88	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]

BLAST of MELO.jh001251.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BIY4	2.08e-82	73.20	LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0K4M5	6.28e-81	71.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1	[more]
A0A6J1GLV7	2.05e-79	76.57	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 S...	[more]
A0A6J1ERG9	3.01e-79	70.56	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 S...	[more]
A0A6J1JLC0	2.05e-78	68.81	glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=...	[more]

BLAST of MELO.jh001251.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21060.1	3.6e-40	55.74	glycine-rich protein 2B	[more]
AT4G38680.1	3.6e-40	53.40	glycine rich protein 2	[more]
AT2G17870.1	2.0e-35	56.89	cold shock domain protein 3	[more]
AT4G36020.1	1.6e-32	51.88	cold shock domain protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002059	Cold-shock protein, DNA-binding	PRINTS	PR00050	COLDSHOCK	coord: 52..70 score: 40.8 coord: 37..46 score: 64.04 coord: 16..31 score: 63.69
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 15..79 e-value: 7.2E-25 score: 86.6
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 13..79 score: 30.12948
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 16..79 e-value: 1.85624E-26 score: 93.0269
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 143..159 e-value: 2.2E-5 score: 33.9 coord: 109..125 e-value: 1.4E-5 score: 34.5
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 143..159 e-value: 1.1E-7 score: 31.6 coord: 109..123 e-value: 1.7E-7 score: 31.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 144..159 score: 11.284516
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 110..123 score: 11.053757
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 15..80 e-value: 6.0E-23 score: 92.2
None	No IPR available	GENE3D	2.40.50.140		coord: 9..90 e-value: 3.0E-27 score: 96.6
None	No IPR available	GENE3D	4.10.60.10		coord: 103..133 e-value: 8.0E-8 score: 33.8 coord: 134..162 e-value: 1.9E-7 score: 32.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..99
None	No IPR available	PANTHER	PTHR46565:SF8	COLD SHOCK PROTEIN 2	coord: 14..162
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 14..162
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 27..46
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 103..160
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 13..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh001251.1.t1	MELO.jh001251.1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding