MELO.jh000925.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh000925.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionNBS-LRR type resistance protein
Locationchr01: 11372080 .. 11372288 (-)
RNA-Seq ExpressionMELO.jh000925.1
SyntenyMELO.jh000925.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGATCCAAGTCGAAGACCCGCGAGACGATGAGTGCAAGCAGTTCCACAACGTTATGTTCTTAGTCGACCATAAAAAAATGAGATTCAAATACAAGCTAAATTTGATCAATCTTTGGAATGGATTGAATTGCAAGATAGAAATTACCAAGCATTAGCTTCAGAAATGAAACAAATACGAAAGCTGATACAGGACATGACTCGGGCACAA

mRNA sequence

GGGATCCAAGTCGAAGACCCGCGAGACGATGAGTGCAAGCAGTTCCACAACGTTATGTTCTTAGTCGACCATAAAAAAATGAGATTCAAATACAAGCTAAATTTGATCAATCTTTGGAATGGATTGAATTGCAAGATAGAAATTACCAAGCATTAGCTTCAGAAATGAAACAAATACGAAAGCTGATACAGGACATGACTCGGGCACAA

Coding sequence (CDS)

ATGTTCTTAGTCGACCATAAAAAAATGAGATTCAAATACAAGCTAAATTTGATCAATCTTTGGAATGGATTGAATTGCAAGATAGAAATTACCAAGCATTAG

Protein sequence

MFLVDHKKMRFKYKLNLINLWNGLNCKIEITKH
Homology
BLAST of MELO.jh000925.1 vs. NCBI nr
Match: KAA0061328.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK14682.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 52.4 bits (124), Expect = 2.18e-06
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 0

Query: 7   KKMRFKYKLNLINLWNGLNCKIEITK 32
           +K RFKYKLNLI LWNGLNCKIEIT+
Sbjct: 334 QKERFKYKLNLIKLWNGLNCKIEITR 359

BLAST of MELO.jh000925.1 vs. NCBI nr
Match: KAA0047463.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ98661.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 49.7 bits (117), Expect = 1.93e-05
Identity = 22/28 (78.57%), Postives = 23/28 (82.14%), Query Frame = 0

Query: 6   HKKMRFKYKLNLINLWNGLNCKIEITKH 33
           HKK R  YKLNL+ LWNGL CKIEITKH
Sbjct: 284 HKK-RLNYKLNLMKLWNGLKCKIEITKH 310

BLAST of MELO.jh000925.1 vs. NCBI nr
Match: KAA0046162.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK00192.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 46.6 bits (109), Expect = 2.34e-04
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 0

Query: 6   HKKMRFKYKLNLINLWNGLNCKIEITK 32
           HKK R  YKLNL+ LWNGL CKIEITK
Sbjct: 248 HKK-RLNYKLNLMKLWNGLKCKIEITK 273

BLAST of MELO.jh000925.1 vs. NCBI nr
Match: KAA0047465.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYJ98663.1 zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 44.7 bits (104), Expect = 3.34e-04
Identity = 18/26 (69.23%), Postives = 21/26 (80.77%), Query Frame = 0

Query: 7  KKMRFKYKLNLINLWNGLNCKIEITK 32
          +K R  YKLNL+ LWNGL CKIEI+K
Sbjct: 61 QKKRLNYKLNLMKLWNGLKCKIEISK 86

BLAST of MELO.jh000925.1 vs. NCBI nr
Match: TYK02447.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 43.5 bits (101), Expect = 6.60e-04
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 0

Query: 7  KKMRFKYKLNLINLWNGLNCKIEITKH 33
          +K R  YKLN + LWNGL  KIEITKH
Sbjct: 66 QKKRLNYKLNFMKLWNGLKYKIEITKH 92

BLAST of MELO.jh000925.1 vs. ExPASy TrEMBL
Match: A0A5D3CTC6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00010 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.06e-06
Identity = 22/26 (84.62%), Postives = 24/26 (92.31%), Query Frame = 0

Query: 7   KKMRFKYKLNLINLWNGLNCKIEITK 32
           +K RFKYKLNLI LWNGLNCKIEIT+
Sbjct: 334 QKERFKYKLNLIKLWNGLNCKIEITR 359

BLAST of MELO.jh000925.1 vs. ExPASy TrEMBL
Match: A0A5D3BIY8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00510 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 9.34e-06
Identity = 22/28 (78.57%), Postives = 23/28 (82.14%), Query Frame = 0

Query: 6   HKKMRFKYKLNLINLWNGLNCKIEITKH 33
           HKK R  YKLNL+ LWNGL CKIEITKH
Sbjct: 284 HKK-RLNYKLNLMKLWNGLKCKIEITKH 310

BLAST of MELO.jh000925.1 vs. ExPASy TrEMBL
Match: A0A5D3BN89 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1333G00020 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.13e-04
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 0

Query: 6   HKKMRFKYKLNLINLWNGLNCKIEITK 32
           HKK R  YKLNL+ LWNGL CKIEITK
Sbjct: 248 HKK-RLNYKLNLMKLWNGLKCKIEITK 273

BLAST of MELO.jh000925.1 vs. ExPASy TrEMBL
Match: A0A5A7U1F0 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00530 PE=4 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 1.62e-04
Identity = 18/26 (69.23%), Postives = 21/26 (80.77%), Query Frame = 0

Query: 7  KKMRFKYKLNLINLWNGLNCKIEITK 32
          +K R  YKLNL+ LWNGL CKIEI+K
Sbjct: 61 QKKRLNYKLNLMKLWNGLKCKIEISK 86

BLAST of MELO.jh000925.1 vs. ExPASy TrEMBL
Match: A0A5D3BSP0 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00560 PE=4 SV=1)

HSP 1 Score: 43.5 bits (101), Expect = 3.19e-04
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 0

Query: 7  KKMRFKYKLNLINLWNGLNCKIEITKH 33
          +K R  YKLN + LWNGL  KIEITKH
Sbjct: 66 QKKRLNYKLNFMKLWNGLKYKIEITKH 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0061328.12.18e-0684.62NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK14682.1 NBS-LRR t... [more]
KAA0047463.11.93e-0578.57CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYJ98661.1 CACTA en-... [more]
KAA0046162.12.34e-0477.78NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK00192.1 NBS-LRR t... [more]
KAA0047465.13.34e-0469.23zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYJ98663.1 zin... [more]
TYK02447.16.60e-0466.67NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CTC61.06e-0684.62NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3BIY89.34e-0678.57CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3BN891.13e-0477.78NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7U1F01.62e-0469.23Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3BSP03.19e-0466.67NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh000925.1.t1MELO.jh000925.1.t1mRNA