MELO.jh000276.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh000276.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr01: 1994356 .. 1996306 (-)
RNA-Seq ExpressionMELO.jh000276.1
SyntenyMELO.jh000276.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TACAATTTGATTTCCCTCCTAACCATAATGCTTTCTTCCAGAAAAAGAAAGACAGAGAAAAAAGAAACAATCAGAATCAGCTACCGGGAGCAGCGGCGGGGGGCGGGGGGCGGAGGAAGAGATTGACGGCTCTTCCGATTCAAACCCTAACGTTCAACGAGTGTTTCAACGTTCCTACATGGAGAATATGAAGACCCAAAGCAACTTTCCGGCTTCCCACTTCGTCGGTCACACTCAAATCCTTACAAACATCCACTTTGAATCGAACCACCATTTCTCTGCCTCTTCCGAGAGACACCTTTTCGAAGCCCAGAAGGTGTTTCTGAGGCGAATTGTGTACCGATGGCGGAGTTGAATACAGAAAAACTGTGTGGCTTCCACTTCTTTGTCCCACGTTCTTTACTCTCAGATGAACATCGAATCCCAGGTTTTGGCAGCTTTCTTGGACGACTTCGAGCGAGTGGCATTTTGACGAGTGGCAAATGTGGCCTTCTTCCAAGGGGATTGATACGAGCTTTGGGGCTTTGACAAGGTGATGTTTGAAATCGGAGTAACTCAATCCATCCCCAAATGAATATACTGTTTCCCCTGTGTAGAATCTGTATGTTCTTCCTGGATATCCATTGGAAGGGCTTGGCCTCATTCTCATGTCCGTCATTGGGACCTTCTCTACGTACGATTGTGGGTACCAAGTCATGGGTAGTCTACCACCTGTTTGATGAAATGCTTCAATGACTTTTGAAAATTTTCTTATTCATGTCCATGGTAGTTAGTTGTTTTACCCATGTTAGTTAGATGAAATTAAGTGAATTGTGTGATTGGAGGGTGCTTAAAGTGTAAAGAGACGTAGACTTACTGGGATTAAAGGATCCAAAGATGACATCGGCTATGGCAGCACCCCCAGCTTCGCCAGGGAAACCGACCCATAAGATGCTCGTAATTTTGTCGTCGTTTTTGGCAAATGTTATATCCATCCCTCCACCAGTCATTATGACAAGAATTACAGGTCCTTTTGATGCTTTGGCCACCTCTGTGATTAAGAGTGGCTGCTGTCCTGGAAGATTCAAGTCGACTCTGTCTCGACTCTCAGCTTCAATTGATTGGTCTGAACCTACTACAAGTACCGTGGCATCTGCTGATGCAGCTATCTTCTTTGCTTCATCTAGCTGAGCAGATGCACAAGCCACATTTGCGCAGCCGGGCTGATACGAGGTGGATACTACGGCTGATAGGCCTTGTAAAGGTGTTGTATATTTGCACGGTGTGCCTGCAAAGAGATAACCAAGTCAAAATAGTGCTCCATTTTTACAAGAGCAGATCAAGTTAATGGGTAGATTCGAAGATGAATTTTTAGAAAATAATGTACCCTCATAGTTTCCAATCATGGTTTTTGTGACATTTGCATTTGGACCAATTACTGCCAAAGACTTGATTGCAGAGGAAGACAAGGGCAGAGATTTTGGGCTGTTTTTAAGCAAGACTATGCCTTGTCTTGCAGCCTCACGGGCCAACTCCTGATGCTCTTGTGTGCAAACATCTTTCGGACCAAGCTTTCCATAAAGCTGCTTGCTGGGGTTGCCATCAAAGAAGCCTAACCGCATCAATGTTAGAAGGTTGTTGAAAACTGCCTTATCAATTGCTGCTTCATTCACCAATCCCCCCTTAACAGCTGCTTCTGTATGTTTCCCGAGAAAATCACCACAGTCGAGATCCAACCCTGTTAAATCAACAAATTTAAACATTGAATCATTCTCTTTCAACCTCTATACATGATAACACTGCAATTCCTATAGAAAATATTGATATTCAGACTTTGTTAGACTGTTTCGTGTGGTTGATTACCTGCCAAAATAGTTTTAGCTGCAGCTTCCTCCGGCGATTTGGTATAGTGTTGAGAATTGTAAAGCACATCTACTGAATCACAATCCGAAACTATATATCTGCAGTTATC

mRNA sequence

TACAATTTGATTTCCCTCCTAACCATAATGCTTTCTTCCAGAAAAAGAAAGACAGAGAAAAAAGAAACAATCAGAATCAGCTACCGGGAGCAGCGGCGGGGGGCGGGGGGCGGAGGAAGAGATTGACGGCTCTTCCGATTCAAACCCTAACGTTCAACGAGTGTTTCAACGTTCCTACATGGAGAATATGAAGACCCAAAGCAACTTTCCGGCTTCCCACTTCGTCGGTCACACTCAAATCCTTACAAACATCCACTTTGAATCGAACCACCATTTCTCTGCCTCTTCCGAGAGACACCTTTTCGAAGCCCAGAAGGTGTTTCTGAGGCGAATTGTGTACCGATGGCGGAGTTGAATACAGAAAAACTGTGTGGCTTCCACTTCTTTGTCCCACGTTCTTTACTCTCAGATGAACATCGAATCCCAGGTTTTGGCAGCTTTCTTGGACGACTTCGAGCGAGTGGCATTTTGACGAGTGGCAAATGTGGCCTTCTTCCAAGGGGATTGATACGAGCTTTGGGGCTTTGACAAGGTGATGTTTGAAATCGGAGTAACTCAATCCATCCCCAAATGAATATACTGTTTCCCCTGTGTAGAATCTGTATGTTCTTCCTGGATATCCATTGGAAGGGCTTGGCCTCATTCTCATGTCCGTCATTGGGACCTTCTCTACGTACGATTGTGGGTACCAAGTCATGGGTAGTCTACCACCTGTTTGATGAAATGCTTCAATGACTTTTGAAAATTTTCTTATTCATGTCCATGGTAGTTAGTTGTTTTACCCATGTTAGTTAGATGAAATTAAGTGAATTGTGTGATTGGAGGGTGCTTAAAGTGTAAAGAGACGTAGACTTACTGGGATTAAAGGATCCAAAGATGACATCGGCTATGGCAGCACCCCCAGCTTCGCCAGGGAAACCGACCCATAAGATGCTCGTAATTTTGTCGTCGTTTTTGGCAAATGTTATATCCATCCCTCCACCAGTCATTATGACAAGAATTACAGGTCCTTTTGATGCTTTGGCCACCTCTGTGATTAAGAGTGGCTGCTGTCCTGGAAGATTCAAGTCGACTCTGTCTCGACTCTCAGCTTCAATTGATTGGTCTGAACCTACTACAAGTACCGTGGCATCTGCTGATGCAGCTATCTTCTTTGCTTCATCTAGCTGAGCAGATGCACAAGCCACATTTGCGCAGCCGGGCTGATACGAGGTGGATACTACGGCTGATAGGCCTTGTAAAGGTGTTGTATATTTGCACGGTGTGCCTGCAAAGAGATAACCAAGTCAAAATAGTGCTCCATTTTTACAAGAGCAGATCAAGTTAATGGGTAGATTCGAAGATGAATTTTTAGAAAATAATGTACCCTCATAGTTTCCAATCATGGTTTTTGTGACATTTGCATTTGGACCAATTACTGCCAAAGACTTGATTGCAGAGGAAGACAAGGGCAGAGATTTTGGGCTGTTTTTAAGCAAGACTATGCCTTGTCTTGCAGCCTCACGGGCCAACTCCTGATGCTCTTGTGTGCAAACATCTTTCGGACCAAGCTTTCCATAAAGCTGCTTGCTGGGGTTGCCATCAAAGAAGCCTAACCGCATCAATGTTAGAAGGTTGTTGAAAACTGCCTTATCAATTGCTGCTTCATTCACCAATCCCCCCTTAACAGCTGCTTCTGTATGTTTCCCGAGAAAATCACCACAGTCGAGATCCAACCCTGTTAAATCAACAAATTTAAACATTGAATCATTCTCTTTCAACCTCTATACATGATAACACTGCAATTCCTATAGAAAATATTGATATTCAGACTTTGTTAGACTGTTTCGTGTGGTTGATTACCTGCCAAAATAGTTTTAGCTGCAGCTTCCTCCGGCGATTTGGTATAGTGTTGAGAATTGTAAAGCACATCTACTGAATCACAATCCGAAACTATATATCTGCAGTTATC

Coding sequence (CDS)

ATGACATCGGCTATGGCAGCACCCCCAGCTTCGCCAGGGAAACCGACCCATAAGATGCTCGTAATTTTGTCGTCGTTTTTGGCAAATGTTATATCCATCCCTCCACCAGTCATTATGACAAGAATTACAGGTCCTTTTGATGCTTTGGCCACCTCTGTGATTAAGAGTGGCTGCTGTCCTGGAAGATTCAAGTCGACTCTGTCTCGACTCTCAGCTTCAATTGATTGGTCTGAACCTACTACAAGTACCGTGGCATCTGCTGATGCAGCTATCTTCTTTGCTTCATCTAGCTGA

Protein sequence

MTSAMAAPPASPGKPTHKMLVILSSFLANVISIPPPVIMTRITGPFDALATSVIKSGCCPGRFKSTLSRLSASIDWSEPTTSTVASADAAIFFASSS
Homology
[Close]
BLAST of MELO.jh000276.1 vs. NCBI nr
Match: KAF4348836.1 (hypothetical protein F8388_005133 [Cannabis sativa])

HSP 1 Score: 66.6 bits (161), Expect = 1.55e-10
Identity = 47/96 (48.96%), Postives = 53/96 (55.21%), Query Frame = 0 

Query: 1  MTSAMAAPPASPGKPTHKMLVILSSFLANVISIPPPVIMTRITGPFDALATSVIKSGCCP 60
          M SA A PPASPG P  +ML I  SF AN  S  PP + TRITG   A AT   ++ C P
Sbjct: 1  MISASALPPASPGYPIQRMLAICGSFSANDTSRGPPPVRTRITGFLLAAATWETRAICLP 60

Query: 61 GRFKSTLSRLSASIDWSEPTTSTVASADAAIFFASS 96
          G+ + T SR S S D S P   T  SA  A   ASS
Sbjct: 61 GKRRLTRSRSSVSWDKSRPRMRTTKSASFAALIASS 96

[Close]
BLAST of MELO.jh000276.1 vs. ExPASy TrEMBL
Match: A0A0A9L2U8 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.00e-14
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 5  MAAPPASPGKPTHKMLVILSSFLANVISIPPPVIMTRITGPFDALATSVIKSGCCPGRFK 64
          MA PPA PG P H+M  IL SF AN +SI PP + TRITGP DALAT+ + S   PGR +
Sbjct: 1  MAWPPAWPGYPAHRMPAILRSFWANAMSIGPPDMSTRITGPLDALATAEMSSAWRPGRSR 60

Query: 65 STLSRLSASI 74
             SR SASI
Sbjct: 61 VVRSRPSASI 70

[Close]
BLAST of MELO.jh000276.1 vs. ExPASy TrEMBL
Match: A0A0A9S603 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.97e-12
Identity = 38/69 (55.07%), Postives = 45/69 (65.22%), Query Frame = 0 

Query: 5  MAAPPASPGKPTHKMLVILSSFLANVISIPPPVIMTRITGPFDALATSVIKSGCCPGRFK 64
          MA PPA PG P H+M  IL SF A  +SI PP + TRITGP +ALAT+ + S   PGR +
Sbjct: 1  MAWPPAWPGYPAHRMPAILRSFWAKAMSIGPPDMSTRITGPLEALATAEMSSAWRPGRSR 60

Query: 65 STLSRLSAS 73
             SR SAS
Sbjct: 61 VVRSRPSAS 69

[Close]
BLAST of MELO.jh000276.1 vs. ExPASy TrEMBL
Match: A0A7J6DS62 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_005133 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.52e-11
Identity = 47/96 (48.96%), Postives = 53/96 (55.21%), Query Frame = 0 

Query: 1  MTSAMAAPPASPGKPTHKMLVILSSFLANVISIPPPVIMTRITGPFDALATSVIKSGCCP 60
          M SA A PPASPG P  +ML I  SF AN  S  PP + TRITG   A AT   ++ C P
Sbjct: 1  MISASALPPASPGYPIQRMLAICGSFSANDTSRGPPPVRTRITGFLLAAATWETRAICLP 60

Query: 61 GRFKSTLSRLSASIDWSEPTTSTVASADAAIFFASS 96
          G+ + T SR S S D S P   T  SA  A   ASS
Sbjct: 61 GKRRLTRSRSSVSWDKSRPRMRTTKSASFAALIASS 96

[Close]
BLAST of MELO.jh000276.1 vs. ExPASy TrEMBL
Match: A0A0A9CWR2 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.83e-11
Identity = 39/72 (54.17%), Postives = 45/72 (62.50%), Query Frame = 0 

Query: 2   TSAMAAPPASPGKPTHKMLVILSSFLANVISIPPPVIMTRITGPFDALATSVIKSGCCPG 61
           T AMA+PPA PG P H+M  IL    ANV S  PPV  TRITG F A AT+V++  C PG
Sbjct: 29  TLAMASPPAWPGYPAHRMAPILGFDWANVTSTGPPVRSTRITGRFAAAATAVMRLCCFPG 88

Query: 62  RFKSTLSRLSAS 73
           R +  LS  S S
Sbjct: 89  RRRLVLSSPSFS 100

[Close]
BLAST of MELO.jh000276.1 vs. ExPASy TrEMBL
Match: A0A2P2NVK1 (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.30e-06
Identity = 34/63 (53.97%), Postives = 38/63 (60.32%), Query Frame = 0 

Query: 25 SFLANVISIPPPVIMTRITGPFDALATSVIKSGCCPGRFKSTLSRLSASIDWSEPTTSTV 84
          SFLA   SI PP I T + GP +A AT   KS   PG+   +LS  SAS DWS P T TV
Sbjct: 7  SFLAKDTSIGPPDIKTNMVGPLEAKATLDTKSCWRPGKRSPSLSLNSASTDWSRPITRTV 66

Query: 85 ASA 87
          ASA
Sbjct: 67 ASA 69

The following BLAST results are available for this feature:
BLAST of MELO.jh000276.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAF4348836.11.55e-1048.96hypothetical protein F8388_005133 [Cannabis sativa][more]
BLAST of MELO.jh000276.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh000276.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9L2U86.00e-1458.57Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A0A9S6037.97e-1255.07Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A7J6DS627.52e-1148.96Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_005133 PE=4 SV=1[more]
A0A0A9CWR29.83e-1154.17Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A2P2NVK11.30e-0653.97Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
BLAST of MELO.jh000276.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh000276.1.t1MELO.jh000276.1.t1mRNA