MC11g_new0500 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0500
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	glutamic acid-rich protein-like
Location	MC11: 19403599 .. 19404129 (+)
RNA-Seq Expression	MC11g_new0500
Synteny	MC11g_new0500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTCAAGGTTAATCCCATTTGTTGTACAATGCGCCGTTTCATCTTTTTGTTGGAGGGGGCGCCCTTCCTTCAAGGGCAACCTGGACGGTTGATTCAACGGTTGGAGTTTGCCCCTTCTCCCTTTAAATTGAGGATGTCTGTGTACTTTGATCCCACCCACACCCTACTCTACACATTTAGGAACTTGTTGGGAGCTTCTGGAGATGATCCTGTTCACGATGACACTCCCTCAGATGAGGACCCTTTCTCAATGGAGGAAGACCCACCTGAGGAAGAGGAAGAGGAGGAACCAATGGAAGAGGACCCCACGGAGGAGGACACAAAGGAAGAAGATTCGGAACCCTTTGAGGCAGAGCCCTCTGAAGTTGAACTGTCGAAGCCAGAGTCTTCAGACGACGAGGATTACAAGGATCCTCGGTATACCAGGCCTTACAATCCTCCTAATGTCAACGTCATGTGCAAGAAGGAATTCGTTACTACTATTATTCTGCTCAAGGACGAGGTCCACGAACTAGCGAAAGAGTAG

mRNA sequence

ATGCATTTCAAGGTTAATCCCATTTGTTGTACAATGCGCCGTTTCATCTTTTTGTTGGAGGGGGCGCCCTTCCTTCAAGGGCAACCTGGACGGTTGATTCAACGGTTGGAGTTTGCCCCTTCTCCCTTTAAATTGAGGATGTCTGTGTACTTTGATCCCACCCACACCCTACTCTACACATTTAGGAACTTGTTGGGAGCTTCTGGAGATGATCCTGTTCACGATGACACTCCCTCAGATGAGGACCCTTTCTCAATGGAGGAAGACCCACCTGAGGAAGAGGAAGAGGAGGAACCAATGGAAGAGGACCCCACGGAGGAGGACACAAAGGAAGAAGATTCGGAACCCTTTGAGGCAGAGCCCTCTGAAGTTGAACTGTCGAAGCCAGAGTCTTCAGACGACGAGGATTACAAGGATCCTCGGTATACCAGGCCTTACAATCCTCCTAATGTCAACGTCATGTGCAAGAAGGAATTCGTTACTACTATTATTCTGCTCAAGGACGAGGTCCACGAACTAGCGAAAGAGTAG

Coding sequence (CDS)

ATGCATTTCAAGGTTAATCCCATTTGTTGTACAATGCGCCGTTTCATCTTTTTGTTGGAGGGGGCGCCCTTCCTTCAAGGGCAACCTGGACGGTTGATTCAACGGTTGGAGTTTGCCCCTTCTCCCTTTAAATTGAGGATGTCTGTGTACTTTGATCCCACCCACACCCTACTCTACACATTTAGGAACTTGTTGGGAGCTTCTGGAGATGATCCTGTTCACGATGACACTCCCTCAGATGAGGACCCTTTCTCAATGGAGGAAGACCCACCTGAGGAAGAGGAAGAGGAGGAACCAATGGAAGAGGACCCCACGGAGGAGGACACAAAGGAAGAAGATTCGGAACCCTTTGAGGCAGAGCCCTCTGAAGTTGAACTGTCGAAGCCAGAGTCTTCAGACGACGAGGATTACAAGGATCCTCGGTATACCAGGCCTTACAATCCTCCTAATGTCAACGTCATGTGCAAGAAGGAATTCGTTACTACTATTATTCTGCTCAAGGACGAGGTCCACGAACTAGCGAAAGAGTAG

Protein sequence

MHFKVNPICCTMRRFIFLLEGAPFLQGQPGRLIQRLEFAPSPFKLRMSVYFDPTHTLLYTFRNLLGASGDDPVHDDTPSDEDPFSMEEDPPEEEEEEEPMEEDPTEEDTKEEDSEPFEAEPSEVELSKPESSDDEDYKDPRYTRPYNPPNVNVMCKKEFVTTIILLKDEVHELAKE

Homology

[Close]

BLAST of MC11g_new0500 vs. NCBI nr
Match: XP_022158218.1 (glutamic acid-rich protein-like [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 1.39e-06
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 106 EEDTKEEDSEPFEAEPSEVEL----SKPESSDD---EDYKDPRYTRPYNPPNVNVMCKKE 165
           EE+ +EE+ EP EAE  E E     S+ ES DD   E Y+DP+YT+P++P NVN M K+E
Sbjct: 3   EENLEEEEEEPEEAEELEEEEEEDPSEVESLDDWEYECYEDPQYTKPHSPSNVNTMSKEE 62

Query: 166 FVTTIILLKDEVHELAKE 176
            V T+I LK+EVH+  +E
Sbjct: 63  LVVTVIRLKEEVHQRTRE 80

[Close]

BLAST of MC11g_new0500 vs. ExPASy TrEMBL
Match: A0A6J1DVH0 (glutamic acid-rich protein-like OS=Momordica charantia OX=3673 GN=LOC111024754 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.75e-07
Identity = 39/78 (50.00%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 106 EEDTKEEDSEPFEAEPSEVEL----SKPESSDD---EDYKDPRYTRPYNPPNVNVMCKKE 165
           EE+ +EE+ EP EAE  E E     S+ ES DD   E Y+DP+YT+P++P NVN M K+E
Sbjct: 3   EENLEEEEEEPEEAEELEEEEEEDPSEVESLDDWEYECYEDPQYTKPHSPSNVNTMSKEE 62

Query: 166 FVTTIILLKDEVHELAKE 176
            V T+I LK+EVH+  +E
Sbjct: 63  LVVTVIRLKEEVHQRTRE 80

The following BLAST results are available for this feature:

BLAST of MC11g_new0500 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158218.1	1.39e-06	50.00	glutamic acid-rich protein-like [Momordica charantia]	[more]

BLAST of MC11g_new0500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVH0	6.75e-07	50.00	glutamic acid-rich protein-like OS=Momordica charantia OX=3673 GN=LOC111024754 P...	[more]

BLAST of MC11g_new0500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0500.1	MC11g_new0500.1	mRNA