MC11g_new0468 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g_new0468
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionIntegrase catalytic domain-containing protein
LocationMC11: 18589329 .. 18594136 (-)
RNA-Seq ExpressionMC11g_new0468
SyntenyMC11g_new0468
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCAAATCTAATACGGTATCAGAAGTAATATTTCGATTTTGACTTTCTTCCCATTCTTCGTTCGTCATGACTGATTCCAACGTCCCCATTTTTACACCGTCGTTGTCTTCTGAGACAATTCCGGCTTCTACATCTCTTCCTTCATCTTGCAATGATTCTCCTCCGAATCCCTACTACCTTCATCATACTGATAACACAGGTCTTGTTCTTGTGAATCAACTCTCATTGAGGAGAATTACACGTCGTGGAGTCGATCGATGATAATTGCACTCTCTGTCAAGAACAAGTTAGGTTTCGTTGATGGAACCATTCTACTTCCTTCTAGAGATTTACTCCATGCCTGGATTCGAAACAATCACGTTGTTATTGCCTAGATCCTCAATTCGGTGTCCAAGGAAATTTCCACGAGCATCCTATTTCCGGAATCTGCTTGGGACATTTGGATCGACCTAAAGGAAAGATTTGAGAAGAGCAATGGACCTCGTATTTTTCAATTGAAGCGTGAATTGGCTACCCGCTCTAAACAACATTCGGTGAGTTTTTATTTCACCAAAATCAAGTCGCTATGGGACGAATTAAGTTAATATCAACCGATATGTTCTTGCAAGTGTTCTTGCGGTGGTGCCAAATCTGCTGCTGAGTTCCTTCCGTATGAGTATTTGATGAATTTCCTCATGGGATTTAATGAATCCTATGCTCAAATTCGTGCTAAACTATTACTCATGGAACCTCCACCTACCATCAATAAAGCGTTTTCTCTTGTTAATCAAGAAGAACAACAACGCTCAATCAATACGACTTCATCGTCGAATTCCGCTTCACCTGCATTTGCGCTCGCTGTTCAACAATCGCCGCCCTCTGGAAAGGTTGTGTCTAAGCCAAATTTTAAATCCAATTCAAGGACAAATCGTTAGCGCCCTTTTTGCACTCACTGTGGAAAAGTCACACAGTTGAGCATTGATACAAATTGCTCGGCTATCCCCCTGGCTCTAAATCTTTAGGCCAGCGTCATTCTCATCTGCTTCGTCACATAAGCCAAGCAATTCTTCCTCATAAAGTCCTACTCCTCAATCGAAGCCTGTTGATTCTTAGGCAATGACTGCTTCTCAAACCACTTTTGACATGGCTGCTTAGTGTCAACAATTGATTCAGCTTCTTCAATCTCAGATGAATGCCTCCAAGAACACTTCAGATGACTCTGCAAATTCATATATGGCAGGTACGTCACCTAATTCATTGCCTGAAAATCGATTGTAGATTTTCGATTATGGTGCTTCGGTGCACATTTGCTGTTCAGCATCTCTTTATCAATCTTTGGCGAAGATTTCTCTGGTTGTTGTCGGTTTACATAATAAGTCCAATTTCACAGTGGAGTATGATGGAACTGTTAAGCTCACATCAGAAATTTATATCACTAATGTTTTCTATATTCCTACTTTCCACTACAACCTGATTTCGATCAGTGGTTTAACCAAGGAATTTCTAGACGTACAGATTCTGTTTGCGGATAATTCTTGTGTTGCTCAGGACAAGTCCACTTCGAGGATGATTGAAAGAAGTAAATTGAGAAATTGTCTCTATTTTCTTGAGGATTCTTCATTGACTGGTGATGTTCCCTCATTACATTATGATGTTCATACTTCTATGGCTGTTAGTAATACATTTGATATTTGGCACAATCGTTAATCGTTTTAAACATCCCTCATTTACACGCTTGAATGTATTACGTGATACTTTGTGTTTTGATTCACATACTTGTAAGCAGCATCTTTGTTCGATATGTCCTTTGGCTAGGCAAAAACGCTTGTCTTTTGATTCCAGTAATAACAAAGTTGCTCGTCCCTTTGATTTGTTGCATGCTGATGTCTGGGGTCCATTTGCACGGTCTACTTATAATGGTCATAAGTATTTCCTTACAGTGGTTGATGATCTTAGTAGATTTACTTGGATATTTTTTATGAGAAATAAGTCTGATGATCTGTCCATAATTCCTCGGTTTTTCACATATATTAAGACTCAATTTGGGGCATCTATCAAAAGTTTTCAATCATACAACGCCCTTGAGTTAGCTTTTAAGGATTTCTTTTCCTATCTAAAGGGGTTATACATCAGTTCTCTTGTGTTGGGAGACCAGAACAGAATTCAGTTGTTGAGCGCAAGCATCAACACATCCTCAACGTGGCTCGAGCTCTTTATTTTCAGTCTCATGTTCCTTTGGAGTTCTGGGGAGATTGCGTTTTAACTGCAATATATTTGATTAACAAAACACTGTCTTTATCTCTGGCTTGGACTACTCCATTTCATATTCTTTATGGCAAATCGCCTAATTTTGCTTCATTAAGGGTGTTTCGTTCACTGTGCTTTGCTTCCACACTTACTTCTCATCGCCATAAGTTTGATCCCCGAGCATCTACTGCTGTTTTTGTTGGTTATCCACTTGGAATGAAGGGATATCGCGTTTATGACCTTCAACTCAAATGTTTCTTTGTGTCAACCATTTTTCCCTTTTCGGATCATGCAACAACTTCCCCTATAAGTGATCCATTTCCAGACACTGTTTTGCTCATCAGCATTGATATGTCCAATGGTCCTTGCAATGTTCCATCACATAACGAATCAGCCATCTCTACTTCCATGCCTATTGACCATTCTTGTCATATAGCATCTACCACCCTTATGCCTGATTTGTCTTGTCCCAATGGTATACCAGCTACTACCCCTACCACTGGCATTTTACTACCTACTAATGTTGACCCAACTAATGATGTTGACCCAACTATGGTTGCTCAATCCCATATTCCAGCTGCTGTACCATCTCCTATTATGGATATTGGTGATAGTGTTGATCAAGTTTGTGTTTCGTCCAATGCTCCATTAAGGCGTTCTTCTGGACCAACTAAAACATCATCCTATCTCCAAGATTATCATTGCTCTCTTTTACAAGGGGTCCAGCCTTTAACTTATTTTACCAAACATCTCTTACATCGTTATGTTTCATATACCAATCTTTCTCCCAACCACTTTTCTATGGTAGTATCAATTTCTTCTCAATATGAGCCAAACTTCTATCATCAAGCGGTTTCTTTCCCACATTGGCGGGCTGCAATGGCAGCTGAACTTGATGCTATGGTGCTTAATAAAACTTGGGATGTTGTTCCCCTTCCCTATGGGCATCATACCATTGGATGCAAGTGGATTTATAAAAGTCAAGCATCGTTTTGATGGGAGCATTGAGCATTATAAAGCTCGTTTGGTGGCGAAAGGTTTTACTCAGCAAGAGGGGTCGATTTTATATAGACTTTCTCAGCCATTGCCAAAATGGTTACGGTCAAAGTTCTTCTCACCATTACTGTTTCCAAAGGGTGGTCTCTTGTCCAGTTAGATGTCAATAATGCCTTTCTTCATGGCGATCTTTTTGAGGAAGTTTATATGGATTTGCCTCTTCGCTATCAACCTCCAACTTCTATTGTTTCTTCGGGGCAATGTCTTCTGTGTCACCTTAAAAAGTCTATTTATGGACTTAAACAGGCCTCTAGACAATGGTTTGCAAAGTTTTCGTCTGTCCTTTTGTCTTTTGGGTTTTCTCAGTCCAAAGCCGACTACTCTTTATTTACTAAGGGACAGGGGCATCATTTGCGGCATTGTTAGTTTATGTGGACGACATAATTGTTACTGTTGCATCGTCTTCCATTATTGATGAGCTTAAGTCTCTTCTCAATCTCAAATTCAAGCTTAAAGACTTGGGATTTCTGAAATATTTTCTAGGCCTTGAACTGGCTCGAAGCTCTAATGGAATTTGTCTCTCTCAGTGACATTATACTTTGACTATGTTGGAAGATGCTGGCTTACTTGGTTGTAAGCCAGTTTCCATCCCTCTTGATCCGAATCTTCATCTTCAGGCTGCTACTGATGGTGAACTTCTTTAAGATCCCTCCCTATATTGTCGTCTTATTGGCAAACTTTTGTACTTGACCGTATCTCGCCCTGATATTGTTTTTGCTGTGAACAAGTTTAGTCAGTTTGTTTCTCGTCTTGAGAAAGTTCATCTTGACGCCGTTTATAATTCGTTATCTAAAAGGGTCTTCTGGTCGTGGCATCTTCTGGTCTGTTTCTTCATCATTTCAAATACATGTCTTTTGTGATGCTGACTGGGGTTCTTGTATTGATACTTGGCGTTCGACGACAGGCTTTTGTATATTTTTGGAAGGCTAAGAAGCAGTCTACCATTTCTCGTTCTTAAGCTGAAGCTGAGTATCGAGCCATGGCCGTTACAACATGTGAAGTTGTATGGCTTACGAGTGTATTGTCTGAGTTGCAGATCCCTGTTCAACAGCCAACTTTATTGTTTTGTGATAATCAGGTCGTCATCCACATTGCATCTAACCCGAGTTTTCATGAGCGGACTAAACATATTAAGTTAGATTGTCACTTTGTTCGTGAACGTATTCTTGCTGGTTTCATCAAATTAATGCCCATATGTTCTCACTCTCAGCTTGCAGATGTTTTCACAAAAGCTCTACCCTATACTGCTTTTTCTTCTATTATTTCTAAGATGGGACTTATTGATATATATCGTCCATCTTGAATGGGGTATCGGAGTATTATTGTAAATAGCTAACTAATTGATTATTTAGTTATGCTTCCTGTTATTGATATATTTCAGTTGTAAATTCTCTATTTAAGTAATGTTGTACTTTCTAGAATAAATTAGAAAAGTCAATTTACACATCTCTGTGTCAAATCTAATACATAGCATATCAATAACTCTACTAATACTACTTCATTGGTAAATCCAAAGTAAGTTTTTG

mRNA sequence

ATGAAGGGATATCGCGTTTATGACCTTCAACTCAAATGTTTCTTTGTGTCAACCATTTTTCCCTTTTCGGATCATGCAACAACTTCCCCTATAAGTGATCCATTTCCAGACACTGTTTTGCTCATCAGCATTGATATGTCCAATGGTCCTTGCAATGTTCCATCACATAACGAATCAGCCATCTCTACTTCCATGCCTATTGACCATTCTTGTCATATAGCATCTACCACCCTTATGCCTGATTTGTCTTGTCCCAATGGTATACCAGCTACTACCCCTACCACTGGCATTTTACTACCTACTAATGTTGACCCAACTAATGATGTTGACCCAACTATGGTTGCTCAATCCCATATTCCAGCTGCTGTACCATCTCCTATTATGGATATTGGTGATAGTGTTGATCAAGTTTGTGTTTCGTCCAATGCTCCATTAAGGCGTTCTTCTGGACCAACTAAAACATCATCCTATCTCCAAGATTATCATTGCTCTCTTTTACAAGGGGTCCAGCCTTTAACTTATTTTACCAAACATCTCTTACATCGTTATGTTTCATATACCAATCTTTCTCCCAACCACTTTTCTATGGTAGTATCAATTTCTTCTCAATATGAGCCAAACTTCTATCATCAAGCGGTTTCTTTCCCACATTGGCGGGCTGCAATGGCAGCTGAACTTGATGCTATGGTGCTTAATAAAACTTGGGATGTTGTTCCCCTTCCCTATGGGCATCATACCATTGGATGCAAGTGGATTTATAAAAGTCAAGCATCGTTTTGA

Coding sequence (CDS)

ATGAAGGGATATCGCGTTTATGACCTTCAACTCAAATGTTTCTTTGTGTCAACCATTTTTCCCTTTTCGGATCATGCAACAACTTCCCCTATAAGTGATCCATTTCCAGACACTGTTTTGCTCATCAGCATTGATATGTCCAATGGTCCTTGCAATGTTCCATCACATAACGAATCAGCCATCTCTACTTCCATGCCTATTGACCATTCTTGTCATATAGCATCTACCACCCTTATGCCTGATTTGTCTTGTCCCAATGGTATACCAGCTACTACCCCTACCACTGGCATTTTACTACCTACTAATGTTGACCCAACTAATGATGTTGACCCAACTATGGTTGCTCAATCCCATATTCCAGCTGCTGTACCATCTCCTATTATGGATATTGGTGATAGTGTTGATCAAGTTTGTGTTTCGTCCAATGCTCCATTAAGGCGTTCTTCTGGACCAACTAAAACATCATCCTATCTCCAAGATTATCATTGCTCTCTTTTACAAGGGGTCCAGCCTTTAACTTATTTTACCAAACATCTCTTACATCGTTATGTTTCATATACCAATCTTTCTCCCAACCACTTTTCTATGGTAGTATCAATTTCTTCTCAATATGAGCCAAACTTCTATCATCAAGCGGTTTCTTTCCCACATTGGCGGGCTGCAATGGCAGCTGAACTTGATGCTATGGTGCTTAATAAAACTTGGGATGTTGTTCCCCTTCCCTATGGGCATCATACCATTGGATGCAAGTGGATTTATAAAAGTCAAGCATCGTTTTGA

Protein sequence

MKGYRVYDLQLKCFFVSTIFPFSDHATTSPISDPFPDTVLLISIDMSNGPCNVPSHNESAISTSMPIDHSCHIASTTLMPDLSCPNGIPATTPTTGILLPTNVDPTNDVDPTMVAQSHIPAAVPSPIMDIGDSVDQVCVSSNAPLRRSSGPTKTSSYLQDYHCSLLQGVQPLTYFTKHLLHRYVSYTNLSPNHFSMVVSISSQYEPNFYHQAVSFPHWRAAMAAELDAMVLNKTWDVVPLPYGHHTIGCKWIYKSQASF
Homology
BLAST of MC11g_new0468 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.3e-08
Identity = 71/266 (26.69%), Postives = 109/266 (40.98%), Query Frame = 0

Query: 15   FVSTIFPFSDH-ATTSPISDP--------FPDTVLLISIDMSNGP-CNVPSHNESAISTS 74
            F    FPFS++ AT SP+ +          P T L     +   P C+ P H  +  S+ 
Sbjct: 744  FDENCFPFSNYLATLSPVQEQRRESSCVWSPHTTLPTRTPVLPAPSCSDPHHAATPPSSP 803

Query: 75   MPIDHSCHIASTTLMPDLSCPNGIPATTPTTGILLPTNVDPTNDVDPTMVAQSHIPAAVP 134
                 +  ++S+ L  D S  +  P++   T    P    P     PT        +   
Sbjct: 804  SAPFRNSQVSSSNL--DSSFSSSFPSSPEPTA---PRQNGPQPTTQPTQTQTQTHSSQNT 863

Query: 135  SPIMDIGDSVDQVCVSSNAPLRRSS---GPT---KTSSYLQDYHCSLLQGVQPLTYFTK- 194
            S      +S  Q+  S + P + SS    PT    +SS        L+    PL      
Sbjct: 864  SQNNPTNESPSQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNN 923

Query: 195  --------HLLHRYVSYTNLSPN-HFSMVVSISSQYEPNFYHQAVSFPHWRAAMAAELDA 254
                    H +        + PN  +S+ VS++++ EP    QA+    WR AM +E++A
Sbjct: 924  NNQAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINA 983

BLAST of MC11g_new0468 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.3e-07
Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 194 FSMVVSISSQYEPNFYHQAVSFPHWRAAMAAELDAMVLNKTWDVVPLPYGHHTIGCKWIY 253
           +S+ ++ + + EP     A+  P W  AM  ELDA+  NKTW +VP P   + +GCKW++
Sbjct: 16  YSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVF 75

Query: 254 KSQ 257
           K++
Sbjct: 76  KTK 78

BLAST of MC11g_new0468 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.9e-05
Identity = 60/232 (25.86%), Postives = 93/232 (40.09%), Query Frame = 0

Query: 25  HATTSPISDPFPDTVLLISIDMSNGPCNVPSHNESAISTSMPIDHSCHIASTTLMPDLSC 84
           H  TSP     P  +    +  S    N+PS + S+ S+S P   S +    T  P  + 
Sbjct: 773 HLDTSPRPPSSPSPLCTTQVSSS----NLPSSSISSPSSSEPTAPSHNGPQPTAQPHQT- 832

Query: 85  PNGIPATTPTTGILLPTNVDPTNDVDPTMVAQSHIPAA-VPSPIMDIGDSVDQVCVSSNA 144
                + +P      P +  P +    + + QS I +  +P+P   I +         N+
Sbjct: 833 -QNSNSNSPILNNPNPNSPSPNSPNQNSPLPQSPISSPHIPTPSTSISE--------PNS 892

Query: 145 PLRRSSGPTKTSSYLQDYHCSLLQGVQPLTYFTKHLLHRYVSYTNLSPNH-FSMVVSISS 204
           P   SS  T T           +  V        H +          PN  +S   S+++
Sbjct: 893 P---SSSSTSTPPLPPVLPAPPIIQVNAQAPVNTHSMATRAKDGIRKPNQKYSYATSLAA 952

Query: 205 QYEPNFYHQAVSFPHWRAAMAAELDAMVLNKTWDVVPLPYGHHTI-GCKWIY 254
             EP    QA+    WR AM +E++A + N TWD+VP P    TI GC+WI+
Sbjct: 953 NSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIF 987

BLAST of MC11g_new0468 vs. NCBI nr
Match: XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])

HSP 1 Score: 176 bits (447), Expect = 2.57e-46
Identity = 108/271 (39.85%), Postives = 145/271 (53.51%), Query Frame = 0

Query: 1   MKGYRVYDLQLKCFFVS-------TIFPFSDHATTSPISDPFPDTVLLISIDMSNGPCNV 60
           MKGY++YD++ K FFVS       +IFPF   +  SPI DPFP  V+  S D+ +     
Sbjct: 516 MKGYKLYDIENKRFFVSRDVIFHESIFPFHTVSVNSPIVDPFPGVVIPKSYDLVDTSSGA 575

Query: 61  PSHNESAISTSMPIDHSCHIASTTLMPD--------LSCPNGIPATTPTTGILLPTNVDP 120
           P  + +  + S     S  I+ T ++PD         S  NG P        ++P N+  
Sbjct: 576 PDDHHNYATGSAVSPTSADISPTVVIPDGSPIMVANESDANGSPILVANESNIMP-NIVE 635

Query: 121 TNDVDPTMVAQSHIPAAVPSPIMDIGDSVDQVCVSSNAPLRRSSGPTKTSSYLQDYHCSL 180
            + ++P     +++ +AV  P  D  DSV          LRRSS   +  SYL+DYHC L
Sbjct: 636 NSLINPLDTDVANVDSAVVVPCSDPSDSVT---------LRRSSRVAQRPSYLRDYHCGL 695

Query: 181 LQGVQPLTYFTKHLLHRYVSYTNLSPNHFSMVVSISSQYEPNFYHQAVSFPHWRAAMAAE 240
           +Q          + L +Y+ Y NLS ++   V+S+S  YEP FYHQAV F HWR AM AE
Sbjct: 696 IQATDHSASSVFYPLQKYLDYNNLSASYKEFVLSVSCDYEPQFYHQAVPFSHWREAMRAE 755

Query: 241 LDAMVLNKTWDVVPLPYGHHTIGCKWIYKSQ 256
           L AM  N TW VVPLPY HH+IGCKWIYK +
Sbjct: 756 LHAMEANHTWSVVPLPYEHHSIGCKWIYKVK 776

BLAST of MC11g_new0468 vs. NCBI nr
Match: XP_022152756.1 (uncharacterized protein LOC111020399 [Momordica charantia])

HSP 1 Score: 128 bits (321), Expect = 1.54e-29
Identity = 66/126 (52.38%), Postives = 86/126 (68.25%), Query Frame = 0

Query: 132 DSVDQVCVSSNAPLRRSSGPTKTSSYLQDYHCSLLQG-VQPLTYFTKHLLHRYVSYTNLS 191
           D++  V  S  AP RRSS PT+  SYLQDYHC L++  V P++   ++LLH+++ Y  L 
Sbjct: 518 DTLISVRASVVAP-RRSSRPTRKPSYLQDYHCGLIKSNVSPVSS-VQYLLHKHLVYDWLC 577

Query: 192 PNHFSMVVSISSQYEPNFYHQAVSFPHWRAAMAAELDAMVLNKTWDVVPLPYGHHTIGCK 251
            N+   V+++S+ YEP FYHQAVSF HWR AM  EL AM  N TW VVPL  G H+IGCK
Sbjct: 578 SNYRGFVLNVSATYEPQFYHQAVSFSHWRDAMRDELQAMESNYTWSVVPLTSGQHSIGCK 637

Query: 252 WIYKSQ 256
           W+YK +
Sbjct: 638 WVYKIK 641

BLAST of MC11g_new0468 vs. NCBI nr
Match: XP_022147777.1 (uncharacterized protein LOC111016631 isoform X2 [Momordica charantia])

HSP 1 Score: 120 bits (300), Expect = 1.29e-28
Identity = 90/274 (32.85%), Postives = 129/274 (47.08%), Query Frame = 0

Query: 1   MKGYRVYDLQLKCFFVSTIFPFSDH------------------ATTSPISDPFPDTVLLI 60
           MK Y +YD+     FVS    F ++                  A   P S  FP   ++ 
Sbjct: 1   MKDYHLYDIARGRIFVSRDVVFHENIFLFHTIPHDGINVDLFPAVALPKSFDFPTKHMVA 60

Query: 61  SIDMSNGPCNVPSHNESAISTSMPIDHSCHIASTTLMPDLSCPNGIPATTPTTGILLPTN 120
            +D+S                S+P+ H+          D S P+    TT T  IL+ ++
Sbjct: 61  EVDLSK--------------ESLPVGHN----------DFSLPD---VTTLTEEILVASS 120

Query: 121 VDPTNDVDPTMVAQSHIPAAVPSPIMDIGDSVDQVCVSSNAPLRRSSGPTKTSSYLQDYH 180
            + +       V  S+ P  VP  I    D+       ++  + RSS   +  SYL+DYH
Sbjct: 121 PNASILAHGDSVHISNPPTDVPVHIY-ASDAPSSTSTDTSIGIWRSSRDVRRPSYLRDYH 180

Query: 181 CSLLQGVQPLTYFTKHLLHRYVSYTNLSPNHFSMVVSISSQYEPNFYHQAVSFPHWRAAM 240
           CSL       +   K+ L  Y+SY  LSP +   ++++S+ +EP+FYH AVS+ HWR AM
Sbjct: 181 CSLAHSNVLASSPLKYKLQEYLSYDKLSPGYKRFILNVSTHHEPSFYHHAVSYFHWRDAM 240

Query: 241 AAELDAMVLNKTWDVVPLPYGHHTIGCKWIYKSQ 256
            AEL AM  N TW VV LP GHH+IGCKW+YK +
Sbjct: 241 NAELLAMESNNTWSVV-LPPGHHSIGCKWVYKVK 245

BLAST of MC11g_new0468 vs. NCBI nr
Match: XP_022147774.1 (uncharacterized protein LOC111016631 isoform X1 [Momordica charantia] >XP_022147776.1 uncharacterized protein LOC111016631 isoform X1 [Momordica charantia])

HSP 1 Score: 120 bits (300), Expect = 2.49e-28
Identity = 90/274 (32.85%), Postives = 129/274 (47.08%), Query Frame = 0

Query: 1   MKGYRVYDLQLKCFFVSTIFPFSDH------------------ATTSPISDPFPDTVLLI 60
           MK Y +YD+     FVS    F ++                  A   P S  FP   ++ 
Sbjct: 1   MKDYHLYDIARGRIFVSRDVVFHENIFLFHTIPHDGINVDLFPAVALPKSFDFPTKHMVA 60

Query: 61  SIDMSNGPCNVPSHNESAISTSMPIDHSCHIASTTLMPDLSCPNGIPATTPTTGILLPTN 120
            +D+S                S+P+ H+          D S P+    TT T  IL+ ++
Sbjct: 61  EVDLSK--------------ESLPVGHN----------DFSLPD---VTTLTEEILVASS 120

Query: 121 VDPTNDVDPTMVAQSHIPAAVPSPIMDIGDSVDQVCVSSNAPLRRSSGPTKTSSYLQDYH 180
            + +       V  S+ P  VP  I    D+       ++  + RSS   +  SYL+DYH
Sbjct: 121 PNASILAHGDSVHISNPPTDVPVHIY-ASDAPSSTSTDTSIGIWRSSRDVRRPSYLRDYH 180

Query: 181 CSLLQGVQPLTYFTKHLLHRYVSYTNLSPNHFSMVVSISSQYEPNFYHQAVSFPHWRAAM 240
           CSL       +   K+ L  Y+SY  LSP +   ++++S+ +EP+FYH AVS+ HWR AM
Sbjct: 181 CSLAHSNVLASSPLKYKLQEYLSYDKLSPGYKRFILNVSTHHEPSFYHHAVSYFHWRDAM 240

Query: 241 AAELDAMVLNKTWDVVPLPYGHHTIGCKWIYKSQ 256
            AEL AM  N TW VV LP GHH+IGCKW+YK +
Sbjct: 241 NAELLAMESNNTWSVV-LPPGHHSIGCKWVYKVK 245

BLAST of MC11g_new0468 vs. NCBI nr
Match: TYK16758.1 (Copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (309), Expect = 8.18e-28
Identity = 92/277 (33.21%), Postives = 128/277 (46.21%), Query Frame = 0

Query: 1   MKGYRVYDLQLKCFFVS-------TIFPFSDHATTSPISDPFPDTVLLISIDMSNGPCNV 60
           MK Y++YD++ K  F+S       T FPF +        DP P      S+      CN+
Sbjct: 374 MKAYKLYDIEHKKVFISRDVIFHETTFPFHNIPKNQISIDPLPG----FSLPKPFHECNL 433

Query: 61  PSHNESAISTSMPIDHSCHIASTTLMPDLSCPNGIPATTPTTGILLPTNVDPTNDVDPTM 120
            SH                   TTL+P            PT    L TN  PT D DP+ 
Sbjct: 434 HSH-------------------TTLIPP-----------PT----LQTNTTPTRDEDPSN 493

Query: 121 VAQSHIPAAVPSPIMD-------------IGDSVDQVCVSSNAPLRRSSGPTKTSSYLQD 180
                       P+ D             I     Q   +    +R+S+  TK  SYLQ 
Sbjct: 494 SNIESNDFENQQPMNDENMARNSDINETTISQQDRQPNANEETTIRKSTRITKPPSYLQA 553

Query: 181 YHCSLLQGVQPLTY-FTKHLLHRYVSYTNLSPNHFSMVVSISSQYEPNFYHQAVSFPHWR 240
           YHCSLL    P T   TK+ +++Y+SY  LSP +   ++ +S++ E +FYH+AV    WR
Sbjct: 554 YHCSLLTTQSPTTQKSTKYPINQYLSYQALSPTYKYSILQVSTKKELSFYHEAVISQEWR 612

Query: 241 AAMAAELDAMVLNKTWDVVPLPYGHHTIGCKWIYKSQ 256
            AM AEL+AM  N+TW +VPLP G ++IGC+W+YK +
Sbjct: 614 EAMKAELEAMETNQTWSIVPLPKGKNSIGCRWVYKIK 612

BLAST of MC11g_new0468 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 176 bits (447), Expect = 1.25e-46
Identity = 108/271 (39.85%), Postives = 145/271 (53.51%), Query Frame = 0

Query: 1   MKGYRVYDLQLKCFFVS-------TIFPFSDHATTSPISDPFPDTVLLISIDMSNGPCNV 60
           MKGY++YD++ K FFVS       +IFPF   +  SPI DPFP  V+  S D+ +     
Sbjct: 516 MKGYKLYDIENKRFFVSRDVIFHESIFPFHTVSVNSPIVDPFPGVVIPKSYDLVDTSSGA 575

Query: 61  PSHNESAISTSMPIDHSCHIASTTLMPD--------LSCPNGIPATTPTTGILLPTNVDP 120
           P  + +  + S     S  I+ T ++PD         S  NG P        ++P N+  
Sbjct: 576 PDDHHNYATGSAVSPTSADISPTVVIPDGSPIMVANESDANGSPILVANESNIMP-NIVE 635

Query: 121 TNDVDPTMVAQSHIPAAVPSPIMDIGDSVDQVCVSSNAPLRRSSGPTKTSSYLQDYHCSL 180
            + ++P     +++ +AV  P  D  DSV          LRRSS   +  SYL+DYHC L
Sbjct: 636 NSLINPLDTDVANVDSAVVVPCSDPSDSVT---------LRRSSRVAQRPSYLRDYHCGL 695

Query: 181 LQGVQPLTYFTKHLLHRYVSYTNLSPNHFSMVVSISSQYEPNFYHQAVSFPHWRAAMAAE 240
           +Q          + L +Y+ Y NLS ++   V+S+S  YEP FYHQAV F HWR AM AE
Sbjct: 696 IQATDHSASSVFYPLQKYLDYNNLSASYKEFVLSVSCDYEPQFYHQAVPFSHWREAMRAE 755

Query: 241 LDAMVLNKTWDVVPLPYGHHTIGCKWIYKSQ 256
           L AM  N TW VVPLPY HH+IGCKWIYK +
Sbjct: 756 LHAMEANHTWSVVPLPYEHHSIGCKWIYKVK 776

BLAST of MC11g_new0468 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)

HSP 1 Score: 128 bits (321), Expect = 7.47e-30
Identity = 66/126 (52.38%), Postives = 86/126 (68.25%), Query Frame = 0

Query: 132 DSVDQVCVSSNAPLRRSSGPTKTSSYLQDYHCSLLQG-VQPLTYFTKHLLHRYVSYTNLS 191
           D++  V  S  AP RRSS PT+  SYLQDYHC L++  V P++   ++LLH+++ Y  L 
Sbjct: 518 DTLISVRASVVAP-RRSSRPTRKPSYLQDYHCGLIKSNVSPVSS-VQYLLHKHLVYDWLC 577

Query: 192 PNHFSMVVSISSQYEPNFYHQAVSFPHWRAAMAAELDAMVLNKTWDVVPLPYGHHTIGCK 251
            N+   V+++S+ YEP FYHQAVSF HWR AM  EL AM  N TW VVPL  G H+IGCK
Sbjct: 578 SNYRGFVLNVSATYEPQFYHQAVSFSHWRDAMRDELQAMESNYTWSVVPLTSGQHSIGCK 637

Query: 252 WIYKSQ 256
           W+YK +
Sbjct: 638 WVYKIK 641

BLAST of MC11g_new0468 vs. ExPASy TrEMBL
Match: A0A6J1D3B0 (uncharacterized protein LOC111016631 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016631 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 6.26e-29
Identity = 90/274 (32.85%), Postives = 129/274 (47.08%), Query Frame = 0

Query: 1   MKGYRVYDLQLKCFFVSTIFPFSDH------------------ATTSPISDPFPDTVLLI 60
           MK Y +YD+     FVS    F ++                  A   P S  FP   ++ 
Sbjct: 1   MKDYHLYDIARGRIFVSRDVVFHENIFLFHTIPHDGINVDLFPAVALPKSFDFPTKHMVA 60

Query: 61  SIDMSNGPCNVPSHNESAISTSMPIDHSCHIASTTLMPDLSCPNGIPATTPTTGILLPTN 120
            +D+S                S+P+ H+          D S P+    TT T  IL+ ++
Sbjct: 61  EVDLSK--------------ESLPVGHN----------DFSLPD---VTTLTEEILVASS 120

Query: 121 VDPTNDVDPTMVAQSHIPAAVPSPIMDIGDSVDQVCVSSNAPLRRSSGPTKTSSYLQDYH 180
            + +       V  S+ P  VP  I    D+       ++  + RSS   +  SYL+DYH
Sbjct: 121 PNASILAHGDSVHISNPPTDVPVHIY-ASDAPSSTSTDTSIGIWRSSRDVRRPSYLRDYH 180

Query: 181 CSLLQGVQPLTYFTKHLLHRYVSYTNLSPNHFSMVVSISSQYEPNFYHQAVSFPHWRAAM 240
           CSL       +   K+ L  Y+SY  LSP +   ++++S+ +EP+FYH AVS+ HWR AM
Sbjct: 181 CSLAHSNVLASSPLKYKLQEYLSYDKLSPGYKRFILNVSTHHEPSFYHHAVSYFHWRDAM 240

Query: 241 AAELDAMVLNKTWDVVPLPYGHHTIGCKWIYKSQ 256
            AEL AM  N TW VV LP GHH+IGCKW+YK +
Sbjct: 241 NAELLAMESNNTWSVV-LPPGHHSIGCKWVYKVK 245

BLAST of MC11g_new0468 vs. ExPASy TrEMBL
Match: A0A6J1D203 (uncharacterized protein LOC111016631 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016631 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 1.20e-28
Identity = 90/274 (32.85%), Postives = 129/274 (47.08%), Query Frame = 0

Query: 1   MKGYRVYDLQLKCFFVSTIFPFSDH------------------ATTSPISDPFPDTVLLI 60
           MK Y +YD+     FVS    F ++                  A   P S  FP   ++ 
Sbjct: 1   MKDYHLYDIARGRIFVSRDVVFHENIFLFHTIPHDGINVDLFPAVALPKSFDFPTKHMVA 60

Query: 61  SIDMSNGPCNVPSHNESAISTSMPIDHSCHIASTTLMPDLSCPNGIPATTPTTGILLPTN 120
            +D+S                S+P+ H+          D S P+    TT T  IL+ ++
Sbjct: 61  EVDLSK--------------ESLPVGHN----------DFSLPD---VTTLTEEILVASS 120

Query: 121 VDPTNDVDPTMVAQSHIPAAVPSPIMDIGDSVDQVCVSSNAPLRRSSGPTKTSSYLQDYH 180
            + +       V  S+ P  VP  I    D+       ++  + RSS   +  SYL+DYH
Sbjct: 121 PNASILAHGDSVHISNPPTDVPVHIY-ASDAPSSTSTDTSIGIWRSSRDVRRPSYLRDYH 180

Query: 181 CSLLQGVQPLTYFTKHLLHRYVSYTNLSPNHFSMVVSISSQYEPNFYHQAVSFPHWRAAM 240
           CSL       +   K+ L  Y+SY  LSP +   ++++S+ +EP+FYH AVS+ HWR AM
Sbjct: 181 CSLAHSNVLASSPLKYKLQEYLSYDKLSPGYKRFILNVSTHHEPSFYHHAVSYFHWRDAM 240

Query: 241 AAELDAMVLNKTWDVVPLPYGHHTIGCKWIYKSQ 256
            AEL AM  N TW VV LP GHH+IGCKW+YK +
Sbjct: 241 NAELLAMESNNTWSVV-LPPGHHSIGCKWVYKVK 245

BLAST of MC11g_new0468 vs. ExPASy TrEMBL
Match: A0A2N9I811 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48072 PE=4 SV=1)

HSP 1 Score: 124 bits (310), Expect = 3.20e-28
Identity = 94/283 (33.22%), Postives = 149/283 (52.65%), Query Frame = 0

Query: 1    MKGYRVYDLQLKCFFVS-------TIFPFSDHATTSPISDPF--PDTVLLISIDMSNGPC 60
            +KGY+++DL  K F VS       + FPF  ++TTS I+ PF  P T    +  +++   
Sbjct: 815  VKGYKLFDLSTKKFLVSRDVIFHESTFPF--YSTTSLIN-PFTSPSTSSDSASYLTHPLL 874

Query: 61   NVPSHNESAISTSMPID-HSC------HIASTTLMPDLSCP-----NGIPATTPTTGILL 120
            +  +  ES+I + +P   H C      H   + L  +L  P        P  +P + +L 
Sbjct: 875  HPTNSTESSIFSPLPTQAHFCPKSPLPHCPESPLHHNLQSPLHHSPESPPQHSPESPLLH 934

Query: 121  --PTNVDPTNDVDPTMVAQSHIPAAVPSPIMDIGDSVDQVCVS-SNAPLRRSSGPTKTSS 180
               +++     V+P + A ++ P     PI  + +SV     S  +A LR+SS P KT S
Sbjct: 935  GPKSSLVSAPSVEPALNASAY-PTDTSQPINTLSESVMDTSSSIPSASLRKSSRPVKTPS 994

Query: 181  YLQDYHCSLLQGVQ---PLTYFTKHLLHRYVSYTNLSPNHFSMVVSISSQYEPNFYHQAV 240
            YLQDYHC+L    +   P +    H +   +SY++LS +H +  +++S+  EP+FYH+A+
Sbjct: 995  YLQDYHCNLTISAETSFPFSAAVTHPIQHNLSYSHLSDSHKAFTLALSTHTEPHFYHEAI 1054

Query: 241  SFPHWRAAMAAELDAMVLNKTWDVVPLPYGHHTIGCKWIYKSQ 256
              P W  AM+ EL A+  N TW +  LP G H+IGCKW+YK +
Sbjct: 1055 HSPQWCEAMSKELTALEANHTWVLTSLPPGKHSIGCKWVYKLK 1093

BLAST of MC11g_new0468 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 58.5 bits (140), Expect = 9.0e-09
Identity = 24/63 (38.10%), Postives = 39/63 (61.90%), Query Frame = 0

Query: 194 FSMVVSISSQYEPNFYHQAVSFPHWRAAMAAELDAMVLNKTWDVVPLPYGHHTIGCKWIY 253
           +S+ ++ + + EP     A+  P W  AM  ELDA+  NKTW +VP P   + +GCKW++
Sbjct: 16  YSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVF 75

Query: 254 KSQ 257
           K++
Sbjct: 76  KTK 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q94HW23.3e-0826.69Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P925201.3e-0738.10Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ... [more]
Q9ZT945.9e-0525.86Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
XP_022154919.12.57e-4639.85uncharacterized protein LOC111022065 [Momordica charantia][more]
XP_022152756.11.54e-2952.38uncharacterized protein LOC111020399 [Momordica charantia][more]
XP_022147777.11.29e-2832.85uncharacterized protein LOC111016631 isoform X2 [Momordica charantia][more]
XP_022147774.12.49e-2832.85uncharacterized protein LOC111016631 isoform X1 [Momordica charantia] >XP_022147... [more]
TYK16758.18.18e-2833.21Copia protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A6J1DNP71.25e-4639.85uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DIP87.47e-3052.38uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1D3B06.26e-2932.85uncharacterized protein LOC111016631 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1D2031.20e-2832.85uncharacterized protein LOC111016631 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A2N9I8113.20e-2833.22Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB... [more]
Match NameE-valueIdentityDescription
ATMG00820.19.0e-0938.10Reverse transcriptase (RNA-dependent DNA polymerase) [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g_new0468.1MC11g_new0468.1mRNA