MC11g_new0452 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0452
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC11: 18061758 .. 18062706 (+)
RNA-Seq Expression	MC11g_new0452
Synteny	MC11g_new0452

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTTACTTGTATTGAGCTAATAGCTAGCAGGAGTGATTGAAATAGATCCTCAATTTTTTCTACCAATGACTCGTTCATAGCTCCTGTTAATCAATATTTTTGTTCATATTGTGGTGATAATTGCCATTCAGTTGAATATTGTGAATCTAATCCTACATCTCTTTATTATCCAGATCCACCAAGGATTCAACAAGAGTTCACTCCTTATTCAAATTCCTACCACCAAGATTGGAGGGATCATTCGAATTTCTTGTGGGGAGAGCAACAACTTGAAAGTAGCTATCCATATGAACATGCATTCCCACAAGAATTTCCAATACAACCTCAGCAGGAGTACGATCAACCAAGGGATCTAAAGCAAATACAATCGTGGGTAATGTCTTGCCTTGAAGAGACGATGATAGATCTTATGGCGAGAAATGAGGCAACAGTACGCAACAACATGATAGATTTTATGGCGCGAAATGATGCAGCAGTACGCAACCTGCATATCCGAATAGATCAATTGGTTGCTGAGCTGAGGAATAGTCCACCAACAGCTTGTCTTAATGACGCGGAGATCCCAAAGCAAGAAGGGGAACAACAAAGTGAGGCAATGAGTGTATGGAGCAAGCTCGAACATGACGAAGTAGAACTTCTAGTGGACAATGATGACCCACCATCCCCTAATGTGATGAACGAGGTAGGAAATTATAAGGAAGTTGAACAAGAGCAACCAGTAGAGGTAATTAAGCATAAGGTTGCAAAGGACCTAAACCCATCACCTCTCAATCTTGGACCACTTTTTCCTTTCCCTCGACATTCTTTAGATACAAATTGAGATATAAAGAAGGGAGAGCTGACCACACATTTCAAGGATAAAATGGAGGAAAAATAGGAGAAGATGAGGTAGGTTCCGATGATGAATTTTATGCAGAAGCAATAACCAAAATTCCCATTTTAA

mRNA sequence

ATGTCTTGCCTTGAAGAGACGATGATAGATCTTATGGCGAGAAATGAGGCAACAGTACGCAACAACATGATAGATTTTATGGCGCGAAATGATGCAGCAGTACGCAACCTGCATATCCGAATAGATCAATTGGTTGCTGAGCTGAGGAATAGTCCACCAACAGCTTGTCTTAATGACGCGGAGATCCCAAAGCAAGAAGGGGAACAACAAAGTGAGGCAATGAGTGTATGGAGCAAGCTCGAACATGACGAAGTAGAACTTCTAGTGGACAATGATGACCCACCATCCCCTAATGTGATGAACGAGGTAGGAAATTATAAGGAAGTTGAACAAGAGCAACCAGTAGAGGTAATTAAGCATAAGGTTGCAAAGGACCTAAACCCATCACCTCTCAATCTTGGACCACTTTTTCCTTTCCCTCGACATTCTTTAGATACAAATTGA

Coding sequence (CDS)

ATGTCTTGCCTTGAAGAGACGATGATAGATCTTATGGCGAGAAATGAGGCAACAGTACGCAACAACATGATAGATTTTATGGCGCGAAATGATGCAGCAGTACGCAACCTGCATATCCGAATAGATCAATTGGTTGCTGAGCTGAGGAATAGTCCACCAACAGCTTGTCTTAATGACGCGGAGATCCCAAAGCAAGAAGGGGAACAACAAAGTGAGGCAATGAGTGTATGGAGCAAGCTCGAACATGACGAAGTAGAACTTCTAGTGGACAATGATGACCCACCATCCCCTAATGTGATGAACGAGGTAGGAAATTATAAGGAAGTTGAACAAGAGCAACCAGTAGAGGTAATTAAGCATAAGGTTGCAAAGGACCTAAACCCATCACCTCTCAATCTTGGACCACTTTTTCCTTTCCCTCGACATTCTTTAGATACAAATTGA

Protein sequence

MSCLEETMIDLMARNEATVRNNMIDFMARNDAAVRNLHIRIDQLVAELRNSPPTACLNDAEIPKQEGEQQSEAMSVWSKLEHDEVELLVDNDDPPSPNVMNEVGNYKEVEQEQPVEVIKHKVAKDLNPSPLNLGPLFPFPRHSLDTN

Homology

[Close]

BLAST of MC11g_new0452 vs. NCBI nr
Match: XP_022157694.1 (uncharacterized protein LOC111024352 [Momordica charantia])

HSP 1 Score: 132 bits (331), Expect = 2.86e-35
Identity = 68/128 (53.12%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 18  TVRNNMIDFMARNDAAVRNLHIRIDQLVAELRNSPPTACLNDAEIPKQEGEQQSEAMSVW 77
           ++   MIDFMAR D ++R L I+++ +V ELRNSP  A   + E       +Q EA +  
Sbjct: 12  SLEQTMIDFMARTDESIRRLQIQVELMVDELRNSPSEALPTNME-------EQGEAFNER 71

Query: 78  SKLEHDEVELLVDNDDPPSPNVMNEVGNYKEVEQEQPVEVIKHKVAKDLNPSPLNLGPLF 137
           S+LE DE+EL +DNDDPP P V+NEV   KEVE E+P+EV++H++  DLNPSPLN+GPLF
Sbjct: 72  SELEDDELELPIDNDDPPIPEVINEVWKNKEVEPEKPIEVMEHELTMDLNPSPLNIGPLF 131

Query: 138 PFPRHSLD 145
           PFPR SL+
Sbjct: 132 PFPRCSLE 132

[Close]

BLAST of MC11g_new0452 vs. NCBI nr
Match: XP_022149401.1 (uncharacterized protein LOC111017826 [Momordica charantia])

HSP 1 Score: 102 bits (253), Expect = 2.55e-24
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 78  SKLEHDEVELLVDNDDPPSPNVMNEVGNYKEVEQEQPVEVIKHKVAKDLNPSPLNLGPLF 137
           S+LE+DE ELLVDNDDPP+P VMNEV   K+VE+E+P+EVI+HKVA DL+PSPL +GP F
Sbjct: 20  SELEYDEPELLVDNDDPPTPEVMNEVWKNKKVEEEEPIEVIEHKVAIDLSPSPLKIGPFF 79

Query: 138 PFPRHSLDTN 147
           PFP+ SL+ N
Sbjct: 80  PFPQRSLEIN 89

[Close]

BLAST of MC11g_new0452 vs. NCBI nr
Match: XP_022157810.1 (uncharacterized protein LOC111024426 [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 2.09e-05
Identity = 37/145 (25.52%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 5   EETMIDLMARNEATVRN--NMIDFMARNDAAVRNLHIRIDQLVAELRNSPPTACLNDAEI 64
           + TM +LM R +AT+++  ++ D+M RND  VRNL +++ QL  E+R  P  +  +    
Sbjct: 13  DATMKELMTRTDATMKDMKDVKDYMGRNDVTVRNLEMQLGQLANEVRTRPRGSLXSSTXE 72

Query: 65  PKQEGEQQSEAMSVWSKLEHDEVELLVDNDDPPSPNVMNEVGNYKEVEQEQPVEVIKHKV 124
           P++ G++   +++  S L ++   +   ++  PSP+   +           P ++++ +V
Sbjct: 73  PRRIGKEHCNSIATRSXLTYEGPRMP--DESSPSPSXEKDTXAV-------PXKIVEPEV 132

Query: 125 AKDLNPSPLNLGPLFPFPRHSLDTN 147
           +  + P   N  P  PFP+  +  N
Sbjct: 133 SVPVAPQVSNSRPPPPFPQRLVRKN 148

[Close]

BLAST of MC11g_new0452 vs. NCBI nr
Match: XP_022159235.1 (uncharacterized protein LOC111025653 [Momordica charantia])

HSP 1 Score: 53.9 bits (128), Expect = 4.34e-05
Identity = 37/145 (25.52%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 5   EETMIDLMARNEATVRN--NMIDFMARNDAAVRNLHIRIDQLVAELRNSPPTACLNDAEI 64
           + TM +LM R + T+++  ++ D+M RND  VR L +++ QLV E+R  P  +  +  E 
Sbjct: 408 DATMKELMTRTDVTMKDMKDVKDYMGRNDVTVRKLEMQLGQLVNEVRTRPQGSLPSSTEE 467

Query: 65  PKQEGEQQSEAMSVWSKLEHDEVELLVDNDDPPSPNVMNEVGNYKEVEQEQPVEVIKHKV 124
           P++ G++   +++  S L+++          P  P+  +   + ++  Q  P ++++  V
Sbjct: 468 PRRIGKEHCNSIATRSGLKYE---------GPRMPDESSHSPSREKDTQAVPDKIVEPAV 527

Query: 125 AKDLNPSPLNLGPLFPFPRHSLDTN 147
           +  + P   N  P  PFP+  +  N
Sbjct: 528 SVPVAPQVSNSRPPPPFPQRLVRKN 543

[Close]

BLAST of MC11g_new0452 vs. NCBI nr
Match: XP_022157836.1 (uncharacterized protein LOC111024449 [Momordica charantia])

HSP 1 Score: 52.4 bits (124), Expect = 1.43e-04
Identity = 41/141 (29.08%), Postives = 66/141 (46.81%), Query Frame = 0


Query: 1   MSCLEETMIDLM-------------ARNEATVRNNMI--DFMARNDAAVRNLHIRIDQLV 60
           MSC+E  M + M             A  E T RN+    D+ +RNDAA+RNL  ++ QL 
Sbjct: 240 MSCMESMMKECMTSMMKEFTIRNDTAMQEFTTRNDTAIRDYTSRNDAAMRNLEAQMGQLA 299

Query: 61  AELRNSPPTACLNDAEIPKQEGEQQSEAMSVWSKLEHDEVELLVDNDDPPSPNVMNEVGN 120
           +EL+N P     +  E PK EG +  + ++  S L ++E ++  +    P+         
Sbjct: 300 SELKNRPRGTLPSATEEPKIEGREHCKTITTRSGLAYEEPKMPREGSSCPTKE------K 359

Query: 121 YKEVEQEQPVEVIKHKVAKDL 126
               E ++P+E+     AK L
Sbjct: 360 ETATEPDEPIEIEMPTYAKFL 374

[Close]

BLAST of MC11g_new0452 vs. ExPASy TrEMBL
Match: A0A6J1DXA5 (uncharacterized protein LOC111024352 OS=Momordica charantia OX=3673 GN=LOC111024352 PE=4 SV=1)

HSP 1 Score: 132 bits (331), Expect = 1.39e-35
Identity = 68/128 (53.12%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 18  TVRNNMIDFMARNDAAVRNLHIRIDQLVAELRNSPPTACLNDAEIPKQEGEQQSEAMSVW 77
           ++   MIDFMAR D ++R L I+++ +V ELRNSP  A   + E       +Q EA +  
Sbjct: 12  SLEQTMIDFMARTDESIRRLQIQVELMVDELRNSPSEALPTNME-------EQGEAFNER 71

Query: 78  SKLEHDEVELLVDNDDPPSPNVMNEVGNYKEVEQEQPVEVIKHKVAKDLNPSPLNLGPLF 137
           S+LE DE+EL +DNDDPP P V+NEV   KEVE E+P+EV++H++  DLNPSPLN+GPLF
Sbjct: 72  SELEDDELELPIDNDDPPIPEVINEVWKNKEVEPEKPIEVMEHELTMDLNPSPLNIGPLF 131

Query: 138 PFPRHSLD 145
           PFPR SL+
Sbjct: 132 PFPRCSLE 132

[Close]

BLAST of MC11g_new0452 vs. ExPASy TrEMBL
Match: A0A6J1D894 (uncharacterized protein LOC111017826 OS=Momordica charantia OX=3673 GN=LOC111017826 PE=4 SV=1)

HSP 1 Score: 102 bits (253), Expect = 1.23e-24
Identity = 48/70 (68.57%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 78  SKLEHDEVELLVDNDDPPSPNVMNEVGNYKEVEQEQPVEVIKHKVAKDLNPSPLNLGPLF 137
           S+LE+DE ELLVDNDDPP+P VMNEV   K+VE+E+P+EVI+HKVA DL+PSPL +GP F
Sbjct: 20  SELEYDEPELLVDNDDPPTPEVMNEVWKNKKVEEEEPIEVIEHKVAIDLSPSPLKIGPFF 79

Query: 138 PFPRHSLDTN 147
           PFP+ SL+ N
Sbjct: 80  PFPQRSLEIN 89

[Close]

BLAST of MC11g_new0452 vs. ExPASy TrEMBL
Match: A0A6J1DU40 (uncharacterized protein LOC111024426 OS=Momordica charantia OX=3673 GN=LOC111024426 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.01e-05
Identity = 37/145 (25.52%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 5   EETMIDLMARNEATVRN--NMIDFMARNDAAVRNLHIRIDQLVAELRNSPPTACLNDAEI 64
           + TM +LM R +AT+++  ++ D+M RND  VRNL +++ QL  E+R  P  +  +    
Sbjct: 13  DATMKELMTRTDATMKDMKDVKDYMGRNDVTVRNLEMQLGQLANEVRTRPRGSLXSSTXE 72

Query: 65  PKQEGEQQSEAMSVWSKLEHDEVELLVDNDDPPSPNVMNEVGNYKEVEQEQPVEVIKHKV 124
           P++ G++   +++  S L ++   +   ++  PSP+   +           P ++++ +V
Sbjct: 73  PRRIGKEHCNSIATRSXLTYEGPRMP--DESSPSPSXEKDTXAV-------PXKIVEPEV 132

Query: 125 AKDLNPSPLNLGPLFPFPRHSLDTN 147
           +  + P   N  P  PFP+  +  N
Sbjct: 133 SVPVAPQVSNSRPPPPFPQRLVRKN 148

[Close]

BLAST of MC11g_new0452 vs. ExPASy TrEMBL
Match: A0A6J1DY39 (uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025653 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.10e-05
Identity = 37/145 (25.52%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 5   EETMIDLMARNEATVRN--NMIDFMARNDAAVRNLHIRIDQLVAELRNSPPTACLNDAEI 64
           + TM +LM R + T+++  ++ D+M RND  VR L +++ QLV E+R  P  +  +  E 
Sbjct: 408 DATMKELMTRTDVTMKDMKDVKDYMGRNDVTVRKLEMQLGQLVNEVRTRPQGSLPSSTEE 467

Query: 65  PKQEGEQQSEAMSVWSKLEHDEVELLVDNDDPPSPNVMNEVGNYKEVEQEQPVEVIKHKV 124
           P++ G++   +++  S L+++          P  P+  +   + ++  Q  P ++++  V
Sbjct: 468 PRRIGKEHCNSIATRSGLKYE---------GPRMPDESSHSPSREKDTQAVPDKIVEPAV 527

Query: 125 AKDLNPSPLNLGPLFPFPRHSLDTN 147
           +  + P   N  P  PFP+  +  N
Sbjct: 528 SVPVAPQVSNSRPPPPFPQRLVRKN 543

[Close]

BLAST of MC11g_new0452 vs. ExPASy TrEMBL
Match: A0A6J1DZC3 (uncharacterized protein LOC111024449 OS=Momordica charantia OX=3673 GN=LOC111024449 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.91e-05
Identity = 41/141 (29.08%), Postives = 66/141 (46.81%), Query Frame = 0


Query: 1   MSCLEETMIDLM-------------ARNEATVRNNMI--DFMARNDAAVRNLHIRIDQLV 60
           MSC+E  M + M             A  E T RN+    D+ +RNDAA+RNL  ++ QL 
Sbjct: 240 MSCMESMMKECMTSMMKEFTIRNDTAMQEFTTRNDTAIRDYTSRNDAAMRNLEAQMGQLA 299

Query: 61  AELRNSPPTACLNDAEIPKQEGEQQSEAMSVWSKLEHDEVELLVDNDDPPSPNVMNEVGN 120
           +EL+N P     +  E PK EG +  + ++  S L ++E ++  +    P+         
Sbjct: 300 SELKNRPRGTLPSATEEPKIEGREHCKTITTRSGLAYEEPKMPREGSSCPTKE------K 359

Query: 121 YKEVEQEQPVEVIKHKVAKDL 126
               E ++P+E+     AK L
Sbjct: 360 ETATEPDEPIEIEMPTYAKFL 374

The following BLAST results are available for this feature:

BLAST of MC11g_new0452 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0452 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157694.1	2.86e-35	53.13	uncharacterized protein LOC111024352 [Momordica charantia]	[more]
XP_022149401.1	2.55e-24	68.57	uncharacterized protein LOC111017826 [Momordica charantia]	[more]
XP_022157810.1	2.09e-05	25.52	uncharacterized protein LOC111024426 [Momordica charantia]	[more]
XP_022159235.1	4.34e-05	25.52	uncharacterized protein LOC111025653 [Momordica charantia]	[more]
XP_022157836.1	1.43e-04	29.08	uncharacterized protein LOC111024449 [Momordica charantia]	[more]

BLAST of MC11g_new0452 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXA5	1.39e-35	53.13	uncharacterized protein LOC111024352 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1D894	1.23e-24	68.57	uncharacterized protein LOC111017826 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DU40	1.01e-05	25.52	uncharacterized protein LOC111024426 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DY39	2.10e-05	25.52	uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DZC3	6.91e-05	29.08	uncharacterized protein LOC111024449 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of MC11g_new0452 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0452.1	MC11g_new0452.1	mRNA