MC11g_new0441 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g_new0441
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC11: 17681933 .. 17682169 (+)
RNA-Seq ExpressionMC11g_new0441
SyntenyMC11g_new0441
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCACCAGCACCCAGCATCGGGCAGACGCCTCTAGGGAAGACGTGGACTTCACTCCTATTTGCAATGGAGTAGTAAAGTTCTCCCATGGTGGCCCCTGCTTGAACCCAAGCACTTTGGTCTGCGATATTGACATTAATTGTTCGAAGATTGAACAGGTCGAGGACGATGAAGGATTGTTGGGAGACGTAGGAGAGGCCATAATCATGGCCTCCGCTGTGGATTCTGATATGTAA

mRNA sequence

ATGCCCACCAGCACCCAGCATCGGGCAGACGCCTCTAGGGAAGACGTGGACTTCACTCCTATTTGCAATGGAGTAGTAAAGTTCTCCCATGGTGGCCCCTGCTTGAACCCAAGCACTTTGGTCTGCGATATTGACATTAATTGTTCGAAGATTGAACAGGTCGAGGACGATGAAGGATTGTTGGGAGACGTAGGAGAGGCCATAATCATGGCCTCCGCTGTGGATTCTGATATGTAA

Coding sequence (CDS)

ATGCCCACCAGCACCCAGCATCGGGCAGACGCCTCTAGGGAAGACGTGGACTTCACTCCTATTTGCAATGGAGTAGTAAAGTTCTCCCATGGTGGCCCCTGCTTGAACCCAAGCACTTTGGTCTGCGATATTGACATTAATTGTTCGAAGATTGAACAGGTCGAGGACGATGAAGGATTGTTGGGAGACGTAGGAGAGGCCATAATCATGGCCTCCGCTGTGGATTCTGATATGTAA

Protein sequence

MPTSTQHRADASREDVDFTPICNGVVKFSHGGPCLNPSTLVCDIDINCSKIEQVEDDEGLLGDVGEAIIMASAVDSDM
Homology
BLAST of MC11g_new0441 vs. NCBI nr
Match: KAF7821040.1 (uncharacterized protein G2W53_026495 [Senna tora])

HSP 1 Score: 53.1 bits (126), Expect = 4.77e-06
Identity = 27/66 (40.91%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 9   ADASREDVDFTPICNGVVKFSHGGPCLNPSTLVCDIDINCSKIEQVEDDEGL-LGDVGEA 68
           AD+  E VDF    + VV+F+     L+   +V D+D++ +++E+VEDDEG  +GDVG+A
Sbjct: 130 ADSGGEAVDFAAFPDLVVEFAERRAGLDDGNVVLDVDVDVAEVEEVEDDEGTEVGDVGDA 189

Query: 69  IIMASA 73
           +I+ +A
Sbjct: 190 LIVVAA 195

BLAST of MC11g_new0441 vs. NCBI nr
Match: RDX62474.1 (hypothetical protein CR513_59188, partial [Mucuna pruriens])

HSP 1 Score: 49.3 bits (116), Expect = 5.68e-05
Identity = 22/72 (30.56%), Postives = 41/72 (56.94%), Query Frame = 0

Query: 1  MPTSTQHRADASREDVDFTPICNGVVKFSHGGPCLNPSTLVCDIDINCSKIEQVEDDEGL 60
          M T T        + ++FT + + ++     G  L+ S LV D+D +C K EQV++D+G 
Sbjct: 1  MTTHTNSGTHPCGKRMNFTLLPDPIINLPQRGTGLDHSNLVLDVDSDCGKFEQVDEDKGF 60

Query: 61 LGDVGEAIIMAS 72
            D+G+A+++ +
Sbjct: 61 FRDIGDALVIVT 72

BLAST of MC11g_new0441 vs. NCBI nr
Match: XP_030931092.1 (zinc finger MYM-type protein 1-like [Quercus lobata])

HSP 1 Score: 49.3 bits (116), Expect = 1.82e-04
Identity = 26/64 (40.62%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 16 VDFTPICNGVVKFSHGGPCLNPSTLVCDIDINCSKIEQVEDDEGLLGDVGEA-IIMASAV 75
          +D T +CN ++ F++G   LNPST++ +I++N SK  +V++D+     V EA I+MA+A 
Sbjct: 1  MDRTFLCNSIIHFTYGCSNLNPSTVIFNINVNGSKELEVKEDKWETSSVREAFIVMATAS 60

Query: 76 DSDM 78
          +SD+
Sbjct: 61 NSDL 64

BLAST of MC11g_new0441 vs. NCBI nr
Match: XP_022549630.1 (uncharacterized protein LOC111201667, partial [Brassica napus])

HSP 1 Score: 46.6 bits (109), Expect = 8.47e-04
Identity = 22/73 (30.14%), Postives = 43/73 (58.90%), Query Frame = 0

Query: 1  MPTSTQHRADASREDVDFTPICNGVVKFSHGGPCLNPSTLVCDIDINCSKIEQVEDDEGL 60
          + + T  R ++ RE  D   + + V+  +  G   +PS L+ +ID + +++  V+D++G 
Sbjct: 13 VTSDTNRRTNSGRESKDLAFLPDMVINLAESGSGGDPSRLIGEIDGDFAEVRHVKDEKGF 72

Query: 61 LGDVGEAIIMASA 73
          LGDV E I++ +A
Sbjct: 73 LGDVRETIVVVAA 85

BLAST of MC11g_new0441 vs. ExPASy TrEMBL
Match: A0A7C9EI49 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 6.72e-06
Identity = 20/54 (37.04%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 19 TPICNGVVKFSHGGPCLNPSTLVCDIDINCSKIEQVEDDEGLLGDVGEAIIMAS 72
          TP+C+GV + +  G  LNP +L+  + +N S++E VE+++G L DVG+ +++ +
Sbjct: 4  TPLCDGVEQLTQCGSRLNPGSLLLQVHLNRSEVEHVEEEKGCLRDVGQTLVVVA 57

BLAST of MC11g_new0441 vs. ExPASy TrEMBL
Match: A0A371E8W1 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_59188 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.75e-05
Identity = 22/72 (30.56%), Postives = 41/72 (56.94%), Query Frame = 0

Query: 1  MPTSTQHRADASREDVDFTPICNGVVKFSHGGPCLNPSTLVCDIDINCSKIEQVEDDEGL 60
          M T T        + ++FT + + ++     G  L+ S LV D+D +C K EQV++D+G 
Sbjct: 1  MTTHTNSGTHPCGKRMNFTLLPDPIINLPQRGTGLDHSNLVLDVDSDCGKFEQVDEDKGF 60

Query: 61 LGDVGEAIIMAS 72
            D+G+A+++ +
Sbjct: 61 FRDIGDALVIVT 72

BLAST of MC11g_new0441 vs. ExPASy TrEMBL
Match: A0A803R938 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.51e-05
Identity = 29/81 (35.80%), Postives = 53/81 (65.43%), Query Frame = 0

Query: 1  MPTSTQHRADASREDVDFTPICNGVVKFSHGGPCLNPSTLVCDIDINCSKIEQVEDDEG- 60
          M T++  RA+ S E +DF  + N VVKFS+    LNPS ++ D++++ SK++++ +++  
Sbjct: 1  MATNSNSRANPSWEAMDFAFLRNFVVKFSNCSTSLNPSRVMFDVNMDESKVDEIYENKRS 60

Query: 61 -LLGDVGEA-IIMASAVDSDM 78
            L  VG + I++AS  +S+M
Sbjct: 61 FYLRHVGNSFIVVASTTNSEM 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAF7821040.14.77e-0640.91uncharacterized protein G2W53_026495 [Senna tora][more]
RDX62474.15.68e-0530.56hypothetical protein CR513_59188, partial [Mucuna pruriens][more]
XP_030931092.11.82e-0440.63zinc finger MYM-type protein 1-like [Quercus lobata][more]
XP_022549630.18.47e-0430.14uncharacterized protein LOC111201667, partial [Brassica napus][more]
Match NameE-valueIdentityDescription
A0A7C9EI496.72e-0637.04Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A371E8W12.75e-0530.56Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_59188 P... [more]
A0A803R9383.51e-0535.80Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g_new0441.1MC11g_new0441.1mRNA