MC11g_new0433 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0433
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	MC11: 17461651 .. 17462280 (+)
RNA-Seq Expression	MC11g_new0433
Synteny	MC11g_new0433

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATGATAGGCGGAGCGTATCAGCAAATGTGTTTACTCTAGGATCAGGAGTAATCACCTGGAGTTCAAAAAAACAAGCCACGACGGCATTGTCGTCTTCGGAAGTAGAGTTCGTCGTAGCAACTTCAGCCGTGTGTCAAGCAATTTGGATAAGAAGAATACTAGCGGAGCTTCAACAGGAGCAAGAGGGAGTAATGGAGATATTCTGCGACAACAAAGCAACGATCTCAATGACGAAGAATCCAACATTTCATAGCAGGACGAAGCACATTGATATTTGTTTCCATTTTATCCGTGATTTGGTTACGAAGGGAGATATTGCTCTAAAGTATTGTAGCACGCACGAACAATGGGCCGACATACTTATGAAGTCTTTGTCAAAGGAGAAATTCTATTACTTTAGAGCGTTGCTTGGAGTTTGCAAATTTGAATCAAGAGGGAGTATTGAAGGAATGATTCAAACTTAGTGGCACCAAATATGGTGGCACTAAGAAAGTGAGATAATGAATAGTGGTACCAATTATGGTGGCACTAAGTTAGTGGGATGATGACTTTTAAGTTTAGGGAGTACTACATTAGTGGAGTTAGTGGTCATGTATACATGTTTTTATTGTTGTAAGCCTATATAAAC

mRNA sequence

ATGGAGATATTCTGCGACAACAAAGCAACGATCTCAATGACGAAGAATCCAACATTTCATAGCAGGACGAAGCACATTGATATTTGTTTCCATTTTATCCGTGATTTGGTTACGAAGGGAGATATTGCTCTAAAGTATTGTAGCACGCACGAACAATGGGCCGACATACTTATGAAGTCTTTGTCAAAGGAGAAATTCTATTACTTTAGAGCGTTGCTTGGAGTTTGCAAATTTGAATCAAGAGGGAGTATTGAAGGAATGATTCAAACTTAG

Coding sequence (CDS)

ATGGAGATATTCTGCGACAACAAAGCAACGATCTCAATGACGAAGAATCCAACATTTCATAGCAGGACGAAGCACATTGATATTTGTTTCCATTTTATCCGTGATTTGGTTACGAAGGGAGATATTGCTCTAAAGTATTGTAGCACGCACGAACAATGGGCCGACATACTTATGAAGTCTTTGTCAAAGGAGAAATTCTATTACTTTAGAGCGTTGCTTGGAGTTTGCAAATTTGAATCAAGAGGGAGTATTGAAGGAATGATTCAAACTTAG

Protein sequence

MEIFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKSLSKEKFYYFRALLGVCKFESRGSIEGMIQT

Homology

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BLAST of MC11g_new0433 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-12
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 3    IFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKSLS 62
            I+CDN     +  NP FHSR KHI I +HFIR+ V  G + + + STH+Q AD L K LS
Sbjct: 1388 IYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLS 1447

Query: 63   KEKFYYFRALLGVCK 78
            +  F  F + +GV +
Sbjct: 1448 RTAFQNFASKIGVTR 1462

[Close]

BLAST of MC11g_new0433 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.0e-12
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 3    IFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKSLS 62
            I+CDN     +  NP FHSR KHI + +HFIR+ V  G + + + STH+Q AD L K LS
Sbjct: 1371 IYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLS 1430

Query: 63   KEKFYYFRALLGVCK 78
            +  F  F   +GV K
Sbjct: 1431 RVAFQNFSRKIGVIK 1445

[Close]

BLAST of MC11g_new0433 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.7e-10
Identity = 27/73 (36.99%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 3    IFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKSLS 62
            ++CD+++ I ++KN  +H+RTKHID+ +H+IR++V    + +   ST+E  AD+L K + 
Sbjct: 1253 VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVP 1312

Query: 63   KEKFYYFRALLGV 76
            + KF   + L+G+
Sbjct: 1313 RNKFELCKELVGM 1325

[Close]

BLAST of MC11g_new0433 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 64.7 bits (156), Expect = 6.1e-10
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 1    MEIFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKS 60
            ++I+ DN+  IS+  NP+ H R KHIDI +HF R+ V    I L+Y  T  Q ADI  K 
Sbjct: 1326 IKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKP 1385

Query: 61   LSKEKFYYFRALLGV 76
            L   +F   R  LG+
Sbjct: 1386 LPAARFVELRDKLGL 1400

[Close]

BLAST of MC11g_new0433 vs. NCBI nr
Match: KAA0036164.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK19710.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (368), Expect = 2.03e-43
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 3  IFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKSLS 62
          IFCDNKATISMTKNPTF SRTKHIDI FHFIRDL+ K +++L YCSTHEQWADIL K+LS
Sbjct: 15 IFCDNKATISMTKNPTFRSRTKHIDIRFHFIRDLLAKEEVSLSYCSTHEQWADILTKALS 74

Query: 63 KEKFYYFRALLGVCKFESRGSIE 85
          KEKF YFRA++G+ KFESRGSIE
Sbjct: 75 KEKFCYFRAMMGISKFESRGSIE 97

[Close]

BLAST of MC11g_new0433 vs. NCBI nr
Match: TYH18023.1 (hypothetical protein ES288_A05G236600v1 [Gossypium darwinii])

HSP 1 Score: 142 bits (358), Expect = 4.74e-42
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1  MEIFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKS 60
          MEIFCDNK TI+MTKNPTFH+RTKH+DI +HFIRDLV  G+I L+Y ST +Q AD+L KS
Sbjct: 1  MEIFCDNKETITMTKNPTFHNRTKHVDIRYHFIRDLVANGEITLEYYSTQDQLADVLTKS 60

Query: 61 LSKEKFYYFRALLGVCKFESRGSI 84
          LSKEKFYYFR LLGVCKFESRGS+
Sbjct: 61 LSKEKFYYFRTLLGVCKFESRGSV 84

[Close]

BLAST of MC11g_new0433 vs. NCBI nr
Match: KAA0054938.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK22727.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 3.03e-41
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 3   IFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKSLS 62
           IFCDNKATIS TKN TFHSRTKHIDI FHFIRDLV K +++L YCSTHEQWADIL+K+LS
Sbjct: 111 IFCDNKATISRTKNLTFHSRTKHIDIRFHFIRDLVAKEEVSLTYCSTHEQWADILIKALS 170

Query: 63  KEKFYYFRALLGVCKFESRGSIE 85
           KEKF YFRA++G+ KFESRGSIE
Sbjct: 171 KEKFCYFRAMMGIRKFESRGSIE 193

[Close]

BLAST of MC11g_new0433 vs. NCBI nr
Match: KAA0038903.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (364), Expect = 3.96e-41
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 3   IFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKSLS 62
           IFCDNKATISMTKN TFHSRTKHIDI FHFIRDLV + + +L YCSTHEQWADIL K+LS
Sbjct: 145 IFCDNKATISMTKNSTFHSRTKHIDIHFHFIRDLVAEEEFSLSYCSTHEQWADILTKALS 204

Query: 63  KEKFYYFRALLGVCKFESRGSIE 85
           KEKF YFRA++G+ KFESRGSIE
Sbjct: 205 KEKFCYFRAMMGISKFESRGSIE 227

[Close]

BLAST of MC11g_new0433 vs. NCBI nr
Match: KAA0058475.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK07272.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 144 bits (362), Expect = 4.28e-41
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 3   IFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKSLS 62
           IFCDNKATISM KNPTFHS+TKHIDI FHFIRDLV K +++L YCSTHEQW DIL K+LS
Sbjct: 123 IFCDNKATISMMKNPTFHSQTKHIDIRFHFIRDLVAKEEVSLSYCSTHEQWTDILTKTLS 182

Query: 63  KEKFYYFRALLGVCKFESRGSIE 85
           KEKF YFRA++G+ KFESRG+IE
Sbjct: 183 KEKFCYFRAMMGISKFESRGTIE 205

[Close]

BLAST of MC11g_new0433 vs. ExPASy TrEMBL
Match: A0A5D3D8B6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00060 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 9.83e-44
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 3  IFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKSLS 62
          IFCDNKATISMTKNPTF SRTKHIDI FHFIRDL+ K +++L YCSTHEQWADIL K+LS
Sbjct: 15 IFCDNKATISMTKNPTFRSRTKHIDIRFHFIRDLLAKEEVSLSYCSTHEQWADILTKALS 74

Query: 63 KEKFYYFRALLGVCKFESRGSIE 85
          KEKF YFRA++G+ KFESRGSIE
Sbjct: 75 KEKFCYFRAMMGISKFESRGSIE 97

[Close]

BLAST of MC11g_new0433 vs. ExPASy TrEMBL
Match: A0A5D2GJD5 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A05G236600v1 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 2.30e-42
Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 1  MEIFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKS 60
          MEIFCDNK TI+MTKNPTFH+RTKH+DI +HFIRDLV  G+I L+Y ST +Q AD+L KS
Sbjct: 1  MEIFCDNKETITMTKNPTFHNRTKHVDIRYHFIRDLVANGEITLEYYSTQDQLADVLTKS 60

Query: 61 LSKEKFYYFRALLGVCKFESRGSI 84
          LSKEKFYYFR LLGVCKFESRGS+
Sbjct: 61 LSKEKFYYFRTLLGVCKFESRGSV 84

[Close]

BLAST of MC11g_new0433 vs. ExPASy TrEMBL
Match: A0A5A7UIY6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00510 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 1.47e-41
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 3   IFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKSLS 62
           IFCDNKATIS TKN TFHSRTKHIDI FHFIRDLV K +++L YCSTHEQWADIL+K+LS
Sbjct: 111 IFCDNKATISRTKNLTFHSRTKHIDIRFHFIRDLVAKEEVSLTYCSTHEQWADILIKALS 170

Query: 63  KEKFYYFRALLGVCKFESRGSIE 85
           KEKF YFRA++G+ KFESRGSIE
Sbjct: 171 KEKFCYFRAMMGIRKFESRGSIE 193

[Close]

BLAST of MC11g_new0433 vs. ExPASy TrEMBL
Match: A0A5A7T7G8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1170G00710 PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 1.92e-41
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 3   IFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKSLS 62
           IFCDNKATISMTKN TFHSRTKHIDI FHFIRDLV + + +L YCSTHEQWADIL K+LS
Sbjct: 145 IFCDNKATISMTKNSTFHSRTKHIDIHFHFIRDLVAEEEFSLSYCSTHEQWADILTKALS 204

Query: 63  KEKFYYFRALLGVCKFESRGSIE 85
           KEKF YFRA++G+ KFESRGSIE
Sbjct: 205 KEKFCYFRAMMGISKFESRGSIE 227

[Close]

BLAST of MC11g_new0433 vs. ExPASy TrEMBL
Match: A0A5A7UXY4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001700 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 2.07e-41
Identity = 65/83 (78.31%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 3   IFCDNKATISMTKNPTFHSRTKHIDICFHFIRDLVTKGDIALKYCSTHEQWADILMKSLS 62
           IFCDNKATISM KNPTFHS+TKHIDI FHFIRDLV K +++L YCSTHEQW DIL K+LS
Sbjct: 123 IFCDNKATISMMKNPTFHSQTKHIDIRFHFIRDLVAKEEVSLSYCSTHEQWTDILTKTLS 182

Query: 63  KEKFYYFRALLGVCKFESRGSIE 85
           KEKF YFRA++G+ KFESRG+IE
Sbjct: 183 KEKFCYFRAMMGISKFESRGTIE 205

The following BLAST results are available for this feature:

BLAST of MC11g_new0433 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	2.9e-12	45.33	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	5.0e-12	45.33	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	2.7e-10	36.99	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	6.1e-10	42.67	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of MC11g_new0433 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036164.1	2.03e-43	80.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYH18023.1	4.74e-42	77.38	hypothetical protein ES288_A05G236600v1 [Gossypium darwinii]	[more]
KAA0054938.1	3.03e-41	80.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0038903.1	3.96e-41	80.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0058475.1	4.28e-41	78.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of MC11g_new0433 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D8B6	9.83e-44	80.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D2GJD5	2.30e-42	77.38	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A05G236600v1 PE=...	[more]
A0A5A7UIY6	1.47e-41	80.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7T7G8	1.92e-41	80.72	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7UXY4	2.07e-41	78.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of MC11g_new0433 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 3..77
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 3..77
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 1..64 e-value: 3.08324E-34 score: 112.176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0433.1	MC11g_new0433.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0015074	DNA integration
biological_process	GO:0006955	immune response
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0052923	all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity
molecular_function	GO:0052924	all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding