MC11g_new0413 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0413
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ty1-copia retrotransposon protein
Location	MC11: 16862839 .. 16865451 (+)
RNA-Seq Expression	MC11g_new0413
Synteny	MC11g_new0413

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAACTGTTGACGACAATTAGATAAAAGATGTATAAATGGAAAGAATTTCTAATAATTTCGAAAGAGTATGTGACAACTACCCAAATTAAAATTAGTGTTAGAATGATCCAACTAACTTGTATATTCTGATTTTTTCTCTTTTGAAAATTGACATACTTAATATAGAAAATTGTAATTTCTTTTTTTTTTTGTGTTTCTATTATTTTTTTAATTGACCTGATCTATGATACTTTTTCCTTAAATAAAATCGATGAAACTTTTTTCCTTATTTAAAAATAAACTTGATGAAATTATTTTCCTTATATAAATCACACTAAAAGAAACTAAATAGAAAATTTGGAAAATAAAATTGAAGAAAATTGAAGAAATTTTTTTTTCTTGTATAAATCACATAATCACGAAAATAATAAAAATAAAAAATAAAAGATTGAACAGAAAACTATGAAAAAATAACGAATCACGGAAAAAAAATAATAATAATCAAATCTGGTTTAGAACAAAGGTGCGTAGTCAGCCACTACAGCAAAGGTAACTATGACAATCTAAACTTGACTGTTATATATTAATACTATGCATTCTAAGTCGAATGTTAGTCCTCCCCGGCCTAAAGCTAGGACCAAGAAAAGCTACATATTACATTTTTAATGTTTGAAGAAGTCTATGTTGGGAATGCAAAAAAAATAAAAATATATTTTAAAAAGTTCTATCTTTGATTGGTTGTCCCACATGAATAGATTTAGAAGTTGGAAAGGTGTTTATATTGAGAATTGTTTTATTTTGCTTGTAAAAAGTATTTGAGGTAGGCCCAAGACCTCTCCACATATGCGCCGCTGCAGCTGTCCATCACATGCACGATAAAAATAAACACCTTTGATTTTTTTGGAAAAAATATTTTAATTACCTAATTTAAAGGTTAAACACATTTTGTACGTTTGAATTAATTTTTAAAACGTTTTGAAATCTTTCCTATATAAAGAAAGAAGTTTTGGCATTTATGAGACAACACTCCAATTCGTTCTCCTCTCCTCACAGTTCTCTCTAACAATTTCTAAGCTTGATTTCGATTCCAGTCCACTCCGACAAGTGCACGTCAGAGTTGGACGTTGTGTTAACCTTAGGTAACAACCGATGACAACAATATTTAGCACCAAGGTCGTGCTGTAATTGCTTTCAAGTTAGTGGTTCCACCCACGACACAACAACATTCTTGATTTGCTTTTCTGTGTTCGTGAATCTACACTCTACTTTCCCTACAAGTTGAAAGCAATTATCATGGCTACTATTCGATCCAGGAAGATTATGTCAAATCTTTCCAAATTGGAACCACTCGATGTGTCCAATTACTGTCGCTGGTCTCAGAAGTTGCTGATATTCTTCGAGCAATTGGAGGTCACCATCCTTGCAGCTCAGCCCACTGCCACTGCTGCTGGTTCATCCTTTGATTCTGACAAATTCGAGAAAGGCAATCATACGATATGTGGCCATCTCCTCAACCATATGAACGATTCCCTCTTTGATCTATTCATATCCCAAAACTCTGTGAAGGTTATATGGGATACATTGGATTCCAGATATGGAGGGGACAATGAAGATAGGAAAAAATACGTGGTCGGTAAGTGGCTACAATTTCAAATGTCGGATGACAAACCCATCATGGACCAGGTGCACGAGTACGAGAATTTGGCAACAAATGTACTGTTTGAGGGGATGAAGATGTGTGAGATTCTTTAGGCGAATATTCTGCTCTAGAAATTTCCTCTTTCCTGGAGTGATTATCGCAACCACTTGAAACACAATAAAAAAGATTTAACTTTGCAAGAGTTGATCGGTCACATACGCATAGAAGAAGCCAATAGGCAAAAAGATAAGCTCTCTTCCCAATCTTAAAATTCAATTAATGCTAACTTAGTTGAATCTTCTTGTGCAAACAAAGACATATTCAAAAGTAAAGGAAAACAAGTTACTAAGAATAGAGTTCAAAACAAGAAAGACTTCCAATTCAAAACTTGTGAAGGAAGAATTGAGAAGTCCAAAATATTTTGTTATGTCTTTGAGAAACAGGATACAAGTTCTACCAGTGCATAATGAGGAAAGGAAAGCCATATCACAAGCATGTTCCACAGGCCAACCTTGCTGAGACAGACGAAATCGTTGTTGCTATGGTCGTTGTGGCGAATTTGGTAAAAAACAAATCCAACTGGATTCTCGATACTGGAGCTTCCAGACACTTCTGTTCGAATCAGGACCTCTGCTGATGGCGATTATGTCTTTATGGGGAACTCAGTAACTACTGTATAGTACTTGGGATAGGAAAGGTTCTTTTAAAGCTTACCTCTGGAAAAAACTTTATCTTTGAATGATGTTTTGTATGTTTCCTCACTACGCAGGAACTTGGTGTCCATGAGTCTTCTGAACAAGGTTGGAATTAGAATTGTGTTTCAAGCTGGCAAGGTTGTCATCACAAAAAATGGTGACTTTATTTGTAAGGGTTATTTAGCTGATGGTTTGTTTGTTCTGAACACAATTTCTAATTCTGCTTCAATAAATGAAATTAATCCTCATTCGGTTTATATCGTTGAGTCTATTGATGTGTGGCATGCTAGACTAGGAC

mRNA sequence

ATGGCTACTATTCGATCCAGGAAGATTATGTCAAATCTTTCCAAATTGGAACCACTCGATGTGTCCAATTACTGTCGCTGGTCTCAGAAGTTGCTGATATTCTTCGAGCAATTGGAGGTCACCATCCTTGCAGCTCAGCCCACTGCCACTGCTGCTGGTTCATCCTTTGATTCTGACAAATTCGAGAAAGGCAATCATACGATATGTGGCCATCTCCTCAACCATATGAACGATTCCCTCTTTGATCTATTCATATCCCAAAACTCTGTGAAGGTTATATGGGATACATTGGATTCCAGATATGGAGGGGACAATGAAGATAGGAAAAAATACGTGGTCGGTAAGTGGCTACAATTTCAAATGTCGGATGACAAACCCATCATGGACCAGGTGCACGAGTACGAGAATTTGGCAACAAATGTACTGTTTGAGGGGATGAAGATGTGTGAGATTCTTTAG

Coding sequence (CDS)

ATGGCTACTATTCGATCCAGGAAGATTATGTCAAATCTTTCCAAATTGGAACCACTCGATGTGTCCAATTACTGTCGCTGGTCTCAGAAGTTGCTGATATTCTTCGAGCAATTGGAGGTCACCATCCTTGCAGCTCAGCCCACTGCCACTGCTGCTGGTTCATCCTTTGATTCTGACAAATTCGAGAAAGGCAATCATACGATATGTGGCCATCTCCTCAACCATATGAACGATTCCCTCTTTGATCTATTCATATCCCAAAACTCTGTGAAGGTTATATGGGATACATTGGATTCCAGATATGGAGGGGACAATGAAGATAGGAAAAAATACGTGGTCGGTAAGTGGCTACAATTTCAAATGTCGGATGACAAACCCATCATGGACCAGGTGCACGAGTACGAGAATTTGGCAACAAATGTACTGTTTGAGGGGATGAAGATGTGTGAGATTCTTTAG

Protein sequence

MATIRSRKIMSNLSKLEPLDVSNYCRWSQKLLIFFEQLEVTILAAQPTATAAGSSFDSDKFEKGNHTICGHLLNHMNDSLFDLFISQNSVKVIWDTLDSRYGGDNEDRKKYVVGKWLQFQMSDDKPIMDQVHEYENLATNVLFEGMKMCEIL

Homology

[Close]

BLAST of MC11g_new0413 vs. NCBI nr
Match: XP_022158735.1 (uncharacterized protein LOC111025197 [Momordica charantia])

HSP 1 Score: 214 bits (545), Expect = 1.44e-67
Identity = 115/193 (59.59%), Postives = 130/193 (67.36%), Query Frame = 0


Query: 1   MATIRSRKIMSNLSKLEPLDVSNYCRWSQKLLIFFEQLEVT--ILAAQP-------TATA 60
           MA IRS K++S+LSKLEPLD SNY +WSQKLLIFFEQLE+   I AAQP       T TA
Sbjct: 1   MAAIRSGKVLSDLSKLEPLDGSNYRQWSQKLLIFFEQLEIDYIITAAQPAAVTTAATTTA 60

Query: 61  AGS--------------------------------SFDSDKFEKGNHTICGHLLNHMNDS 120
           A +                                  ++DKFEK N T+ GHLLNHMNDS
Sbjct: 61  AAAVTAXTVTAXVTDPPAXAAATVSVXAAVPXTSTXIEADKFEKDNKTVRGHLLNHMNDS 120

Query: 121 LFDLFISQNSVKVIWDTLDSRYGGDNEDRKKYVVGKWLQFQMSDDKPIMDQVHEYENLAT 152
           LFDLF+ Q S KVIWDTL+SRYGGD+  R+KYVVGKWLQFQMSDDKP+MDQVHEYENL  
Sbjct: 121 LFDLFVVQKSAKVIWDTLESRYGGDDAGRRKYVVGKWLQFQMSDDKPVMDQVHEYENLVA 180

[Close]

BLAST of MC11g_new0413 vs. NCBI nr
Match: XP_008463045.1 (PREDICTED: uncharacterized protein LOC103501285 [Cucumis melo])

HSP 1 Score: 193 bits (490), Expect = 2.21e-59
Identity = 100/181 (55.25%), Postives = 118/181 (65.19%), Query Frame = 0


Query: 1   MATIRSRKIMSNLSKLEPLDVSNYCRWSQKLLIFFEQLEVTILAAQ-------PTATAAG 60
           M+   S KI+ +LSKLEPLD +NY RWSQKLLIFFEQLEV  +          PT T+  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPTTTSTS 60

Query: 61  SS----------------------FDSDKFEKGNHTICGHLLNHMNDSLFDLFISQNSVK 120
           S                        D +K+ K N T+ GHLLNHM+D +FDLF  Q S K
Sbjct: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFAVQKSAK 120

Query: 121 VIWDTLDSRYGGDNEDRKKYVVGKWLQFQMSDDKPIMDQVHEYENLATNVLFEGMKMCEI 152
            IW TL+SRYGGD+  RKKYVVGKWLQFQM+DDKPI++Q+HEYENL  NVL EGMKMC+I
Sbjct: 121 EIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCKI 180

[Close]

BLAST of MC11g_new0413 vs. NCBI nr
Match: XP_008445782.1 (PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo])

HSP 1 Score: 196 bits (497), Expect = 6.53e-59
Identity = 100/181 (55.25%), Postives = 119/181 (65.75%), Query Frame = 0


Query: 1   MATIRSRKIMSNLSKLEPLDVSNYCRWSQKLLIFFEQLEVTILAAQ-------PTATAAG 60
           M+   S KI+ +LSKLEPLD +NY RWSQKLLIFFEQLEV  +          PT T+  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SS----------------------FDSDKFEKGNHTICGHLLNHMNDSLFDLFISQNSVK 120
           S                        D +K+ K N T+ GHLLNHM+D +FDLF+ Q S K
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 VIWDTLDSRYGGDNEDRKKYVVGKWLQFQMSDDKPIMDQVHEYENLATNVLFEGMKMCEI 152
            IW TL+SRYGGD+  RKKYVVGKWLQFQM+DDKP+++Q+HEYENL  NVL EGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

[Close]

BLAST of MC11g_new0413 vs. NCBI nr
Match: XP_008456453.1 (PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo])

HSP 1 Score: 193 bits (490), Expect = 2.94e-58
Identity = 99/181 (54.70%), Postives = 119/181 (65.75%), Query Frame = 0


Query: 1   MATIRSRKIMSNLSKLEPLDVSNYCRWSQKLLIFFEQLEVTILAAQ-------PTATAAG 60
           M+   S KI+ +LSKLEPLD +NY RWSQKLLIFFEQLEV  +          PT T+  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60

Query: 61  SS----------------------FDSDKFEKGNHTICGHLLNHMNDSLFDLFISQNSVK 120
           S+                       D +K+ K N T+ GHLLNHM+D +FDLF+ Q S K
Sbjct: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 VIWDTLDSRYGGDNEDRKKYVVGKWLQFQMSDDKPIMDQVHEYENLATNVLFEGMKMCEI 152
            IW TL+SRYGGD+  RKKYVVGKWLQFQM+DDKP+++Q+HEYENL  NVL E MKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180

[Close]

BLAST of MC11g_new0413 vs. NCBI nr
Match: TYK24060.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 195 bits (496), Expect = 4.86e-58
Identity = 100/181 (55.25%), Postives = 119/181 (65.75%), Query Frame = 0


Query: 1   MATIRSRKIMSNLSKLEPLDVSNYCRWSQKLLIFFEQLEVTILAAQ-------PTATAAG 60
           M+   S KI+ +LSKLEPLD +NY RWSQKLLIFFEQLEV  +          PT T+  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SS----------------------FDSDKFEKGNHTICGHLLNHMNDSLFDLFISQNSVK 120
           S                        D +K+ K N T+ GHLLNHM+D +FDLF+ Q S K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 VIWDTLDSRYGGDNEDRKKYVVGKWLQFQMSDDKPIMDQVHEYENLATNVLFEGMKMCEI 152
            IW TL+SRYGGD+  RKKYVVGKWLQFQM+DDKP+++Q+HEYENL  NVL EGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

[Close]

BLAST of MC11g_new0413 vs. ExPASy TrEMBL
Match: A0A6J1DWN1 (uncharacterized protein LOC111025197 OS=Momordica charantia OX=3673 GN=LOC111025197 PE=4 SV=1)

HSP 1 Score: 214 bits (545), Expect = 6.95e-68
Identity = 115/193 (59.59%), Postives = 130/193 (67.36%), Query Frame = 0


Query: 1   MATIRSRKIMSNLSKLEPLDVSNYCRWSQKLLIFFEQLEVT--ILAAQP-------TATA 60
           MA IRS K++S+LSKLEPLD SNY +WSQKLLIFFEQLE+   I AAQP       T TA
Sbjct: 1   MAAIRSGKVLSDLSKLEPLDGSNYRQWSQKLLIFFEQLEIDYIITAAQPAAVTTAATTTA 60

Query: 61  AGS--------------------------------SFDSDKFEKGNHTICGHLLNHMNDS 120
           A +                                  ++DKFEK N T+ GHLLNHMNDS
Sbjct: 61  AAAVTAXTVTAXVTDPPAXAAATVSVXAAVPXTSTXIEADKFEKDNKTVRGHLLNHMNDS 120

Query: 121 LFDLFISQNSVKVIWDTLDSRYGGDNEDRKKYVVGKWLQFQMSDDKPIMDQVHEYENLAT 152
           LFDLF+ Q S KVIWDTL+SRYGGD+  R+KYVVGKWLQFQMSDDKP+MDQVHEYENL  
Sbjct: 121 LFDLFVVQKSAKVIWDTLESRYGGDDAGRRKYVVGKWLQFQMSDDKPVMDQVHEYENLVA 180

[Close]

BLAST of MC11g_new0413 vs. ExPASy TrEMBL
Match: A0A1S3CJW3 (uncharacterized protein LOC103501285 OS=Cucumis melo OX=3656 GN=LOC103501285 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 1.07e-59
Identity = 100/181 (55.25%), Postives = 118/181 (65.19%), Query Frame = 0


Query: 1   MATIRSRKIMSNLSKLEPLDVSNYCRWSQKLLIFFEQLEVTILAAQ-------PTATAAG 60
           M+   S KI+ +LSKLEPLD +NY RWSQKLLIFFEQLEV  +          PT T+  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPTTTSTS 60

Query: 61  SS----------------------FDSDKFEKGNHTICGHLLNHMNDSLFDLFISQNSVK 120
           S                        D +K+ K N T+ GHLLNHM+D +FDLF  Q S K
Sbjct: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFAVQKSAK 120

Query: 121 VIWDTLDSRYGGDNEDRKKYVVGKWLQFQMSDDKPIMDQVHEYENLATNVLFEGMKMCEI 152
            IW TL+SRYGGD+  RKKYVVGKWLQFQM+DDKPI++Q+HEYENL  NVL EGMKMC+I
Sbjct: 121 EIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPIVEQIHEYENLVANVLSEGMKMCKI 180

[Close]

BLAST of MC11g_new0413 vs. ExPASy TrEMBL
Match: A0A1S3BE75 (uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=4 SV=1)

HSP 1 Score: 196 bits (497), Expect = 3.16e-59
Identity = 100/181 (55.25%), Postives = 119/181 (65.75%), Query Frame = 0


Query: 1   MATIRSRKIMSNLSKLEPLDVSNYCRWSQKLLIFFEQLEVTILAAQ-------PTATAAG 60
           M+   S KI+ +LSKLEPLD +NY RWSQKLLIFFEQLEV  +          PT T+  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDETNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SS----------------------FDSDKFEKGNHTICGHLLNHMNDSLFDLFISQNSVK 120
           S                        D +K+ K N T+ GHLLNHM+D +FDLF+ Q S K
Sbjct: 61  SDPESSTGPLTAVAVTEQVKMDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 VIWDTLDSRYGGDNEDRKKYVVGKWLQFQMSDDKPIMDQVHEYENLATNVLFEGMKMCEI 152
            IW TL+SRYGGD+  RKKYVVGKWLQFQM+DDKP+++Q+HEYENL  NVL EGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

[Close]

BLAST of MC11g_new0413 vs. ExPASy TrEMBL
Match: A0A1S3C3Z1 (uncharacterized protein LOC103496396 OS=Cucumis melo OX=3656 GN=LOC103496396 PE=4 SV=1)

HSP 1 Score: 193 bits (490), Expect = 1.42e-58
Identity = 99/181 (54.70%), Postives = 119/181 (65.75%), Query Frame = 0


Query: 1   MATIRSRKIMSNLSKLEPLDVSNYCRWSQKLLIFFEQLEVTILAAQ-------PTATAAG 60
           M+   S KI+ +LSKLEPLD +NY RWSQKLLIFFEQLEV  +          PT T+  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPSSDPPTTTSTS 60

Query: 61  SS----------------------FDSDKFEKGNHTICGHLLNHMNDSLFDLFISQNSVK 120
           S+                       D +K+ K N T+ GHLLNHM+D +FDLF+ Q S K
Sbjct: 61  SNPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 VIWDTLDSRYGGDNEDRKKYVVGKWLQFQMSDDKPIMDQVHEYENLATNVLFEGMKMCEI 152
            IW TL+SRYGGD+  RKKYVVGKWLQFQM+DDKP+++Q+HEYENL  NVL E MKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEDMKMCEI 180

[Close]

BLAST of MC11g_new0413 vs. ExPASy TrEMBL
Match: A0A5D3DL36 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00280 PE=4 SV=1)

HSP 1 Score: 195 bits (496), Expect = 2.35e-58
Identity = 100/181 (55.25%), Postives = 119/181 (65.75%), Query Frame = 0


Query: 1   MATIRSRKIMSNLSKLEPLDVSNYCRWSQKLLIFFEQLEVTILAAQ-------PTATAAG 60
           M+   S KI+ +LSKLEPLD +NY RWSQKLLIFFEQLEV  +          PT T+  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  SS----------------------FDSDKFEKGNHTICGHLLNHMNDSLFDLFISQNSVK 120
           S                        D +K+ K N T+ GHLLNHM+D +FDLF+ Q S K
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

Query: 121 VIWDTLDSRYGGDNEDRKKYVVGKWLQFQMSDDKPIMDQVHEYENLATNVLFEGMKMCEI 152
            IW TL+SRYGGD+  RKKYVVGKWLQFQM+DDKP+++Q+HEYENL  NVL EGMKMCEI
Sbjct: 121 DIWSTLESRYGGDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEI 180

[Close]

BLAST of MC11g_new0413 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 64.7 bits (156), Expect = 7.3e-11
Identity = 35/150 (23.33%), Postives = 75/150 (50.00%), Query Frame = 0


Query: 15  KLEPLDVSNYCRWSQKLLIFFEQLEVTILAAQPTATAAGS-------------SFDSDKF 74
           K+   D  +Y  W+ ++ +F +QL++T + ++P  +   S                  K+
Sbjct: 194 KISRFDGKSYLYWASQMELFLKQLKLTYVLSEPCPSIGSSQGPETNPREITRADATGKKW 253

Query: 75  EKGNHTICGHLLNHMNDSLFDLFISQ-NSVKVIWDTLDSRYGGDNEDRKKYVVGKWLQFQ 134
            + ++    HL+N ++D L+  +  +    K +WD L   Y  D    K+  V K+++F+
Sbjct: 254 LRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQCDESKSKRSQVRKYIEFR 313

Query: 135 MSDDKPIMDQVHEYENLATNVLFEGMKMCE 151
           M +++PI++QV  +  +A +++  GM + E
Sbjct: 314 MVEERPILEQVQVFNKIADSIVSAGMFLDE 343

The following BLAST results are available for this feature:

BLAST of MC11g_new0413 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0413 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158735.1	1.44e-67	59.59	uncharacterized protein LOC111025197 [Momordica charantia]	[more]
XP_008463045.1	2.21e-59	55.25	PREDICTED: uncharacterized protein LOC103501285 [Cucumis melo]	[more]
XP_008445782.1	6.53e-59	55.25	PREDICTED: uncharacterized protein LOC103488707 [Cucumis melo]	[more]
XP_008456453.1	2.94e-58	54.70	PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]	[more]
TYK24060.1	4.86e-58	55.25	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MC11g_new0413 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWN1	6.95e-68	59.59	uncharacterized protein LOC111025197 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A1S3CJW3	1.07e-59	55.25	uncharacterized protein LOC103501285 OS=Cucumis melo OX=3656 GN=LOC103501285 PE=...	[more]
A0A1S3BE75	3.16e-59	55.25	uncharacterized protein LOC103488707 OS=Cucumis melo OX=3656 GN=LOC103488707 PE=...	[more]
A0A1S3C3Z1	1.42e-58	54.70	uncharacterized protein LOC103496396 OS=Cucumis melo OX=3656 GN=LOC103496396 PE=...	[more]
A0A5D3DL36	2.35e-58	55.25	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of MC11g_new0413 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	7.3e-11	23.33	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 69..140 e-value: 4.1E-8 score: 33.1
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 58..151
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 58..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0413.1	MC11g_new0413.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding