MC11g_new0375 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0375
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Egg cell-secreted protein 1.2-like
Location	MC11: 15415956 .. 15416246 (-)
RNA-Seq Expression	MC11g_new0375
Synteny	MC11g_new0375

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATTACATTCAACACCATATTTTCTCTCCTTGCTCTGATAGCTCTTGTCCTTCGAACCTCCATGGCTATGGCTATGGATGACAGTAGATTGCCTTCAAATGACATTGCGGTGAGCACGAGGGTGGAGCTCATGAACGATATGAATTGTTTGAATCATTTTCTAAATCAGCTTGTATCGTGTAAGAGCGAAATTGCATCGTTCATTGCGAATAATGGTGTGGTTCAGTTATGTCCAACTTGTTGCCAAGCAATTTTGGGGTTTCAAAGGCAGTGCTTGTCCTAA

mRNA sequence

ATGGCTTCCATTACATTCAACACCATATTTTCTCTCCTTGCTCTGATAGCTCTTGTCCTTCGAACCTCCATGGCTATGGCTATGGATGACAGTAGATTGCCTTCAAATGACATTGCGGTGAGCACGAGGGTGGAGCTCATGAACGATATGAATTGTTTGAATCATTTTCTAAATCAGCTTGTATCGTGTAAGAGCGAAATTGCATCGTTCATTGCGAATAATGGTGTGGTTCAGTTATGTCCAACTTGTTGCCAAGCAATTTTGGGGTTTCAAAGGCAGTGCTTGTCCTAA

Coding sequence (CDS)

ATGGCTTCCATTACATTCAACACCATATTTTCTCTCCTTGCTCTGATAGCTCTTGTCCTTCGAACCTCCATGGCTATGGCTATGGATGACAGTAGATTGCCTTCAAATGACATTGCGGTGAGCACGAGGGTGGAGCTCATGAACGATATGAATTGTTTGAATCATTTTCTAAATCAGCTTGTATCGTGTAAGAGCGAAATTGCATCGTTCATTGCGAATAATGGTGTGGTTCAGTTATGTCCAACTTGTTGCCAAGCAATTTTGGGGTTTCAAAGGCAGTGCTTGTCCTAA

Protein sequence

MASITFNTIFSLLALIALVLRTSMAMAMDDSRLPSNDIAVSTRVELMNDMNCLNHFLNQLVSCKSEIASFIANNGVVQLCPTCCQAILGFQRQCLS

Homology

[Close]

BLAST of MC11g_new0375 vs. NCBI nr
Match: KGN45861.1 (hypothetical protein Csa_005369 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 1.07e-11
Identity = 44/96 (45.83%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1  MASITFNTIFSLLALIALVLRTSMAMAMDDSRLPSNDIAVSTRVELMNDMNCLNHFLNQL 60
          MASI F  +F L++L+ALVL TSMAM              S  +     MNC N  L   
Sbjct: 1  MASIAFK-LFFLVSLLALVLPTSMAMN-----------GSSMALNATTTMNCFNPLLQ-- 60

Query: 61 VSCKSEIASFIANNGVVQLCPTCCQAILGFQRQCLS 96
           SC++EI +FI NNG+V +   CCQAIL F+R+CLS
Sbjct: 61 -SCRNEILTFITNNGLVVIRSACCQAILNFRRECLS 81

[Close]

BLAST of MC11g_new0375 vs. NCBI nr
Match: KAA0035017.1 (egg cell-secreted protein 1.2-like [Cucumis melo var. makuwa] >TYK02355.1 egg cell-secreted protein 1.2-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.84e-10
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 1  MASITFNTIFSLLALIALVLRTSMAMAMDDSRLPSNDIAVSTRVELMNDMNCLNHFLNQL 60
          MASI F  +F L++L+ LVL TSMA+              S  +     MNC N  L   
Sbjct: 1  MASIAFK-LFFLISLLVLVLPTSMALN-----------GGSMALNATTTMNCFNPLLQ-- 60

Query: 61 VSCKSEIASFIANNGVVQLCPTCCQAILGFQRQCLS 96
           SC++EI +FI NNG+V +   CCQAIL F+R CLS
Sbjct: 61 -SCRNEIVTFITNNGLVVIRSACCQAILNFRRDCLS 81

[Close]

BLAST of MC11g_new0375 vs. ExPASy TrEMBL
Match: A0A0A0KDK2 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G014810 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.19e-12
Identity = 44/96 (45.83%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 1  MASITFNTIFSLLALIALVLRTSMAMAMDDSRLPSNDIAVSTRVELMNDMNCLNHFLNQL 60
          MASI F  +F L++L+ALVL TSMAM              S  +     MNC N  L   
Sbjct: 1  MASIAFK-LFFLVSLLALVLPTSMAMN-----------GSSMALNATTTMNCFNPLLQ-- 60

Query: 61 VSCKSEIASFIANNGVVQLCPTCCQAILGFQRQCLS 96
           SC++EI +FI NNG+V +   CCQAIL F+R+CLS
Sbjct: 61 -SCRNEILTFITNNGLVVIRSACCQAILNFRRECLS 81

[Close]

BLAST of MC11g_new0375 vs. ExPASy TrEMBL
Match: A0A5D3BT50 (Egg cell-secreted protein 1.2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00520 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.93e-11
Identity = 42/96 (43.75%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 1  MASITFNTIFSLLALIALVLRTSMAMAMDDSRLPSNDIAVSTRVELMNDMNCLNHFLNQL 60
          MASI F  +F L++L+ LVL TSMA+              S  +     MNC N  L   
Sbjct: 1  MASIAFK-LFFLISLLVLVLPTSMALN-----------GGSMALNATTTMNCFNPLLQ-- 60

Query: 61 VSCKSEIASFIANNGVVQLCPTCCQAILGFQRQCLS 96
           SC++EI +FI NNG+V +   CCQAIL F+R CLS
Sbjct: 61 -SCRNEIVTFITNNGLVVIRSACCQAILNFRRDCLS 81

The following BLAST results are available for this feature:

BLAST of MC11g_new0375 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0375 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45861.1	1.07e-11	45.83	hypothetical protein Csa_005369 [Cucumis sativus]	[more]
KAA0035017.1	1.84e-10	43.75	egg cell-secreted protein 1.2-like [Cucumis melo var. makuwa] >TYK02355.1 egg ce...	[more]

BLAST of MC11g_new0375 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDK2	5.19e-12	45.83	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G0148...	[more]
A0A5D3BT50	8.93e-11	43.75	Egg cell-secreted protein 1.2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of MC11g_new0375 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008502	Prolamin-like domain	PFAM	PF05617	Prolamin_like	coord: 51..95 e-value: 1.4E-5 score: 25.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0375.1	MC11g_new0375.1	mRNA