MC11g_new0286 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0286
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ty3-gypsy retrotransposon protein
Location	MC11: 12226304 .. 12228864 (+)
RNA-Seq Expression	MC11g_new0286
Synteny	MC11g_new0286

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAGACGAATGAAGGTGCAGACGAAATTGAGGTGAATCGTCGGAGAACGCGCAAGCAATCGGAAGAATAGTCCCAGCGAACGGAGAAGAAGACACAAACGGTCACTATTTTCGAATTTGGGGGTTTTCGAATTTGGAGATATTTTTTGAGGTTTTCGAATTTGAGGGATTTGGGGATATTTTTGGATGTTTTGGTATTTTAGTTTCTTTGGGTAGGTATCATTAAGTAAATATCATGTGATTCCAAATATAACCTTCTATTGAATGAATTCTGGAATTTAAAAATCAATTAATATTAATGTATATATATAAAAGGATAGTTTTGTAATTTAGGTGATGGGTACCATCTTAAATAAGTTCTTTCATAAAAAACGGTAAATTTTATACATTTCATCTTTTATGTAATTAGGATCTTTAAATTTCATACATTCCATCTTTTGATCTTGTGGCCCACTTTCCGTTCACAATTTATTTGCCTTGCGCATTTGATATCCACCTATATAAAAAATAAAAACTTTTAGTTGGTAGCTTTTTAAAAAGAAAACTATTTGTAAATATATATTTCTGAAAAAATAATCTAAATATAGCTTTTTAAATAAATTCAAATATAATAATTTTTTGAAATTGAAAAATTATTAAATTTGGTTGGTGATCTAAACAAAAATATGAAAACGTGGGACTTATAGTTATCCATGTTTAAGTATTTTTGGTATTCAATTGCAAATTTGAAATTTTAATTTCAATTTAAAAAATCATTCAAGGTAATTAGTAATATAGGGTAGTTACCGCCTAAATATTGAGTTCAATTTAAAATATTATTCATTAATTTATTAATATATATGTTATAATTTTTGTAGAATAATTCTAAAATATTATATAATTTATAATATATGTTATATTTTACATGTTTTAATTTTAACAAAAGTAAAATTAATTTATAACATTAAATAGTATATTTATTAAAATTTTTATCTTTTTTATTGTCGTTTTGTATGTTAAAGTTTCAAATTCAAAATCCGAAAGTACTTAAAACATAAAAATATTGTTTTCATAATTTTTACGGTTTGGATCATAGATCCAAAAACAGATATCCATAATAAAAAATTGTTTGACCATATTACATTTGGTTTGCCAATGAAAAATAAATTAATTCGTAGGTATGTGGCCATCATGGGATGCAATTACCTCTAAATCTTTTTTATTTACCTTGGCCTATTTGGACCAATCAGCCACTCATGATTGTTAATAAAAAGATAATATAAATTAATAATGAATTCATATATTGATTATTATAATTGTAGTAATCACTAATTAATCTATATCAATAAGTGGTGGTCACTCAATTAACATGTATTTTATCTTTTTAATATTTACAATTATTTTTTACTACTATTTTTATGATATTTTTGTAGAACCATAAATTTTGGATCAATTATAAATGGTGATGTCATCATTGACAAAATTATATTTTACTAAATTTTGGGTCAATTAAAATTAAAGACAAAAAAACGATAATTCTTAAATAATATCATATGTTTTTCATTGGGTCCTCTTTAGATTGGATTTAATTGGTCGAATTGGGCCATATAAAATTAAGCTCATAACCAAATTAGTTCAAAAATTCATTGGATGATTTTTTTGGCCCAAAACCCAAATTACTATAAGACCATTATGGTCGATTGATAGTTAAATTTGAATAAGTCTAAATTCACTTAAAAAGAGTTGGGCTGGGTCCAAAATTACCCCAAGCTCAGATATTTCAAAATTAAATTGAGCTCATGACTCAAATAGAACTCAAATCCATGAGTTTGGTCCAAAATCACCCAAGCCCAAGGTCAACTAAATTCTATCGGAAACTCTATAAATATAGGAGTCTTCCTCATTCTAGAGGATCAAAGTTTAGAAGTTGAGAATTGAAACGATTCATATATCAAATTGAAGACTCTCTACCAAGACTTGAAGATTCGGACTAACATAAAAACTTTTAAACCGTATAGAACTTCGATCCAAATTCAAGAACAAGCATCTCAATCTTCACATCAAGTTTAAGAGAATGAATCAAAGGATAAAGATTAGAGATTAAATCCACCACACAAACATATAACCATATAAAAGCTCAACTCCACGAAATATAATTTGGCACGCACGATGGAGCAATCTCTACCTCTCATCTTTTTTTCAAGACTCAAATTTTTCTCAAGAAAAAGAAAGAAGAAGAAATGACATCTAAGAAAGCTTCTGCAAAAACTTATGTTTCAAGCGACTTCTACACCAGACTGATTACCCTAGTCACTCCAAAGAAATTCGGCTAGAAGAAGATCAAACTCCTCCTGCTATTGCAAGAAAGATCAATAACTCTTTGTTCAACGAGTCTGCTCTCTCATCTATTCAATTGGAGAAAATCCTAGAAATCGATGTGTTGTTTGTCATGGTAGCTGATGCAAGCATCATGGAAGCTAGAGTGGCTGAAATGGAAAGGAAGCTCGCTGCTTTGATTAAGATAGACGAAGAAAGAGATTATGAAATTGCTTCCTTCAAGAATCCGATTGAAAGTTGA

mRNA sequence

ATGAAGCAGACGAATGAAGGTGCAGACGAAATTGAGACTGATTACCCTAGTCACTCCAAAGAAATTCGGCTAGAAGAAGATCAAACTCCTCCTGCTATTGCAAGAAAGATCAATAACTCTTTGTTCAACGAGTCTGCTCTCTCATCTATTCAATTGGAGAAAATCCTAGAAATCGATGTGTTGTTTGTCATGGTAGCTGATGCAAGCATCATGGAAGCTAGAGTGGCTGAAATGGAAAGGAAGCTCGCTGCTTTGATTAAGATAGACGAAGAAAGAGATTATGAAATTGCTTCCTTCAAGAATCCGATTGAAAGTTGA

Coding sequence (CDS)

ATGAAGCAGACGAATGAAGGTGCAGACGAAATTGAGACTGATTACCCTAGTCACTCCAAAGAAATTCGGCTAGAAGAAGATCAAACTCCTCCTGCTATTGCAAGAAAGATCAATAACTCTTTGTTCAACGAGTCTGCTCTCTCATCTATTCAATTGGAGAAAATCCTAGAAATCGATGTGTTGTTTGTCATGGTAGCTGATGCAAGCATCATGGAAGCTAGAGTGGCTGAAATGGAAAGGAAGCTCGCTGCTTTGATTAAGATAGACGAAGAAAGAGATTATGAAATTGCTTCCTTCAAGAATCCGATTGAAAGTTGA

Protein sequence

MKQTNEGADEIETDYPSHSKEIRLEEDQTPPAIARKINNSLFNESALSSIQLEKILEIDVLFVMVADASIMEARVAEMERKLAALIKIDEERDYEIASFKNPIES

Homology

[Close]

BLAST of MC11g_new0286 vs. NCBI nr
Match: XP_022156574.1 (uncharacterized protein LOC111023450 [Momordica charantia])

HSP 1 Score: 173 bits (439), Expect = 5.18e-50
Identity = 95/98 (96.94%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 8   ADEIETDYPSHSKEIRLEEDQTPPAIARKINNSLFNESALSSIQLEKILEIDVLFVMVAD 67
           AD   TDYPSHSKEIRLEEDQTPPAIARKINNSLFNESALSSIQLEKILEIDVLFVMVAD
Sbjct: 328 ADNFLTDYPSHSKEIRLEEDQTPPAIARKINNSLFNESALSSIQLEKILEIDVLFVMVAD 387

Query: 68  ASIMEARVAEMERKLAALIKIDEERDYEIASFKNPIES 105
           ASIMEARVAEMERKLAALIKIDEERDYEIASFKNPIES
Sbjct: 388 ASIMEARVAEMERKLAALIKIDEERDYEIASFKNPIES 425

[Close]

BLAST of MC11g_new0286 vs. NCBI nr
Match: KAA0061565.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.40e-06
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 17  SHSKEIRLEEDQTPPAIARKINNSLFNESALSSIQLEKILEIDVLFVMVADASIMEARVA 76
           S S+EI+  ED  P  +A+ I   +      ++   E++ + +++ VMV +    E R+A
Sbjct: 22  SRSREIQSSEDMPPFEVAKNIREQISKPPKCAN---EEVPQPNIMSVMVTNVDTSENRMA 81

Query: 77  EMERKLAALIKIDEERDYEIASFKNPIES 105
           E+E+K+  L+K+ EERDYEIA  KN IES
Sbjct: 82  ELEKKVNMLMKVVEERDYEIAFLKNHIES 107

[Close]

BLAST of MC11g_new0286 vs. NCBI nr
Match: KAA0051086.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK12104.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 2.93e-06
Identity = 40/106 (37.74%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 17  SHSKEIRLEEDQTPPAIARKINNSLFNESALSSIQLEKILEID----------------- 76
           SHS+EI+L E+  P  +A+ I   LF       I +++ L ID                 
Sbjct: 22  SHSREIQLAEEMPPFEVAKNIWEQLFKPPK-DEITIKENLVIDEHGSSFESSNEEMSHQN 81

Query: 77  VLFVMVADASIMEARVAEMERKLAALIKIDEERDYEIASFKNPIES 105
           ++ VMV DA     R+ ++E+K+  L+K  EERDYEIAS KN IES
Sbjct: 82  IMLVMVTDADTSVNRMTKLEKKINILMKAVEERDYEIASLKNHIES 126

[Close]

BLAST of MC11g_new0286 vs. NCBI nr
Match: TYK29782.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 2.99e-06
Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 17  SHSKEIRLEEDQTPPAIARKI----------------NNSLFNESALSSIQLEKILEIDV 76
           S S+EI+  ED  P  +A+ I                N ++   ++LS    E++ + ++
Sbjct: 22  SRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENPAVDEHNSLSECSNEEVPQPNI 81

Query: 77  LFVMVADASIMEARVAEMERKLAALIKIDEERDYEIASFKNPIES 105
           + VMV +    E R+AE+E+K+  L+K+ EERDYEIA  KN IES
Sbjct: 82  MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIES 126

[Close]

BLAST of MC11g_new0286 vs. NCBI nr
Match: KAA0059562.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 4.43e-06
Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 17  SHSKEIRLEEDQTPPAIARKI----------------NNSLFNESALSSIQLEKILEIDV 76
           S S+EI+  ED  P  +A+ I                N ++   ++LS    E++ + ++
Sbjct: 22  SRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENTAVDEHNSLSECSNEEVPQPNI 81

Query: 77  LFVMVADASIMEARVAEMERKLAALIKIDEERDYEIASFKNPIES 105
           + VMV +    E R+AE+E+K+  L+K+ EERDYEIA  KN IES
Sbjct: 82  MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIES 126

[Close]

BLAST of MC11g_new0286 vs. ExPASy TrEMBL
Match: A0A6J1DTW2 (uncharacterized protein LOC111023450 OS=Momordica charantia OX=3673 GN=LOC111023450 PE=4 SV=1)

HSP 1 Score: 173 bits (439), Expect = 2.51e-50
Identity = 95/98 (96.94%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 8   ADEIETDYPSHSKEIRLEEDQTPPAIARKINNSLFNESALSSIQLEKILEIDVLFVMVAD 67
           AD   TDYPSHSKEIRLEEDQTPPAIARKINNSLFNESALSSIQLEKILEIDVLFVMVAD
Sbjct: 328 ADNFLTDYPSHSKEIRLEEDQTPPAIARKINNSLFNESALSSIQLEKILEIDVLFVMVAD 387

Query: 68  ASIMEARVAEMERKLAALIKIDEERDYEIASFKNPIES 105
           ASIMEARVAEMERKLAALIKIDEERDYEIASFKNPIES
Sbjct: 388 ASIMEARVAEMERKLAALIKIDEERDYEIASFKNPIES 425

[Close]

BLAST of MC11g_new0286 vs. ExPASy TrEMBL
Match: A0A5A7V6U6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001270 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.16e-06
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 17  SHSKEIRLEEDQTPPAIARKINNSLFNESALSSIQLEKILEIDVLFVMVADASIMEARVA 76
           S S+EI+  ED  P  +A+ I   +      ++   E++ + +++ VMV +    E R+A
Sbjct: 22  SRSREIQSSEDMPPFEVAKNIREQISKPPKCAN---EEVPQPNIMSVMVTNVDTSENRMA 81

Query: 77  EMERKLAALIKIDEERDYEIASFKNPIES 105
           E+E+K+  L+K+ EERDYEIA  KN IES
Sbjct: 82  ELEKKVNMLMKVVEERDYEIAFLKNHIES 107

[Close]

BLAST of MC11g_new0286 vs. ExPASy TrEMBL
Match: A0A5A7UA64 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00370 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.42e-06
Identity = 40/106 (37.74%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 17  SHSKEIRLEEDQTPPAIARKINNSLFNESALSSIQLEKILEID----------------- 76
           SHS+EI+L E+  P  +A+ I   LF       I +++ L ID                 
Sbjct: 22  SHSREIQLAEEMPPFEVAKNIWEQLFKPPK-DEITIKENLVIDEHGSSFESSNEEMSHQN 81

Query: 77  VLFVMVADASIMEARVAEMERKLAALIKIDEERDYEIASFKNPIES 105
           ++ VMV DA     R+ ++E+K+  L+K  EERDYEIAS KN IES
Sbjct: 82  IMLVMVTDADTSVNRMTKLEKKINILMKAVEERDYEIASLKNHIES 126

[Close]

BLAST of MC11g_new0286 vs. ExPASy TrEMBL
Match: A0A5D3E1L5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold857G00080 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.45e-06
Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 17  SHSKEIRLEEDQTPPAIARKI----------------NNSLFNESALSSIQLEKILEIDV 76
           S S+EI+  ED  P  +A+ I                N ++   ++LS    E++ + ++
Sbjct: 22  SRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENPAVDEHNSLSECSNEEVPQPNI 81

Query: 77  LFVMVADASIMEARVAEMERKLAALIKIDEERDYEIASFKNPIES 105
           + VMV +    E R+AE+E+K+  L+K+ EERDYEIA  KN IES
Sbjct: 82  MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIES 126

[Close]

BLAST of MC11g_new0286 vs. ExPASy TrEMBL
Match: A0A5A7UUI7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00790 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.14e-06
Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 17  SHSKEIRLEEDQTPPAIARKI----------------NNSLFNESALSSIQLEKILEIDV 76
           S S+EI+  ED  P  +A+ I                N ++   ++LS    E++ + ++
Sbjct: 22  SRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENTAVDEHNSLSECSNEEVPQPNI 81

Query: 77  LFVMVADASIMEARVAEMERKLAALIKIDEERDYEIASFKNPIES 105
           + VMV +    E R+AE+E+K+  L+K+ EERDYEIA  KN IES
Sbjct: 82  MSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIES 126

The following BLAST results are available for this feature:

BLAST of MC11g_new0286 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0286 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156574.1	5.18e-50	96.94	uncharacterized protein LOC111023450 [Momordica charantia]	[more]
KAA0061565.1	2.40e-06	38.20	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051086.1	2.93e-06	37.74	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK12104.1 ty3-gyp...	[more]
TYK29782.1	2.99e-06	35.24	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0059562.1	4.43e-06	35.24	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MC11g_new0286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTW2	2.51e-50	96.94	uncharacterized protein LOC111023450 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5A7V6U6	1.16e-06	38.20	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UA64	1.42e-06	37.74	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3E1L5	1.45e-06	35.24	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UUI7	2.14e-06	35.24	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of MC11g_new0286 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 68..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0286.1	MC11g_new0286.1	mRNA