MC11g_new0280 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0280
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	MC11: 11591853 .. 11593832 (+)
RNA-Seq Expression	MC11g_new0280
Synteny	MC11g_new0280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTCCACCTCGGCATACTAAGAGGTCAAAGTCCACCTCATTCTGTTAAGAGTGCAACCTATGAGAGATCACAAGATCTCTCCCTCTGCCCCCATCAACAAGCTAGACCCTTCATCAACCATTTCAATGAAGGATTTTCTTTCGTACAAGGTTAAAATACCTCCCATATCAGTAAATAAAAGTGGGTCATTGCTATGATTCTCACCATCCTTGGACAATGATAATTGCCAATGTTTGGACAACAATTAGTCTTCTTTCTTTATAGCCATTTATTTCTTCCCATTGAATATAAAGTTGCCATTGGTTTAAGTTTAGGAAATTACTGCTTAAATCTCTCCTTATTCCTTATACTTCCTATTGACTTGATAGTTGACATATACTCATCAAGGTGTATAAAGTATGCATTTTTGTGTTTAAAATTTTTATCAAAAGTAAGTGAGAATTATTCTTGAATTTGGATTAATGTTGGTTTTATATTTTTGTTGGTGGTATCAAAGCTTTGCTGTGCTTAAGAAAGAAACCTCCTTACCAAATCTTGAATTCTTCTCATGGCAAACACAGAACAATTCCTCTCAATTCGATCATTTAATCAATGCACCAGTTTGATCTCAATCAAGTTTAATACTGGGAACTACCTGCTGTGGAAATCCCAAGTGTTGCCTCTGATCAAGAGCATGGGAATCGAACACCATCTCACCAAAGAAGATGCACCAGAAAAAGAGATTTGTGACAAAGATGGGAGCTCAACTATCAACCCTGCACACAATGTTTGGACAACAAATGATGGACTCCTCACTTCTTGGCTACTAGATATCATTTCCCAAGATGTTATGAGTATGGTTGAAGGGATTAAAACAGCCTACCAGGTTTGGAAATTTCTAGAGAATCAATTACTTACGATGACCAAAGAAAGTGAGATCCATGTAAGTGAAACTTTTCTTACATTGAAAAAGGGATACCTAACGCTTGATGAATACTTGAAAAAATTCAAACACTTGTGTGATAAGCTTACTGCAATTAAGAAGCACTTAGATGATCTCACAAAAGTTCTTCATCTTGCTAGAGGTTTAGGTAGTAAATACCAAGGGTTTAGAACAGTCATGCTATCAAAAGCTCCCTATCACATCTTTAACCAATTTGTTTTGGCTCTTAAAGCACATGATCAGATGCTTTCAATTGAAAACGAAGATGATAAGTTGTCTTCAATCAACCACAATCATGCATACTACAGCCAAAGAGGAAGGAGCAGAGGTCGTGGTAGGCATTTCTTGTCCAAAGGAAGGGGATTTCCCCAAAACAGACCTCGAGGATAAAATGGTCACAAAGAACAACAACCAAGTGATACTCATAGACCATTCTCTCCAAAATCTAAAGGTCAGGTTGCTTGCCAAATTTGTGCAAAAATAAATCATTATAGCTGTTGATTTTTGGAACAGGTTTGATCACTCTTACCAATCAAATGATATAGCAAAAGCATTGGCTGCCATGACTCTTATGGAAGAAGCAAACCCTGCTTCAGCACACATTACCAACAACACAAGTAAGCTAAGTCATTTAGAATCTTATCATGGAGAGGATAAAGTTTTTGTGGGAAATGGAGAAGGTCTAAAAACAACTCATATAGGACAAAGCTCTATTACTGCTAGAAATAGAAAGTTGAAATTGAAAGATATACTAGTTGATCTTGAAATAAAAAAACAACTCCTCTCTATTAGTAAGCTTACTTCTGATAATGATTGCTCTATTGAGTTCTTTGCCATGATTTTGTTATTGAGAATGCACAGGGGCAGATCATGGCCAAGGGGTGTAGAAGAAATGGTCTATATGCCTTAAAAGATCAAGAAGATGTAGCCAACAAGGCGTTTATTGCTTTTCTTACCTCAAATTCTGCTATTGTTTCCAATACTGCATTACTAGCTTCAAATAAGCATTTCATCATCCATTTGGCCCAACGTTTAGGCCATTTAAATGAGAAAGCAT

mRNA sequence

ATGGCAAACACAGAACAATTCCTCTCAATTCGATCATTTAATCAATGCACCAGTTTGATCTCAATCAAGTTTAATACTGGGAACTACCTGCTGTGGAAATCCCAAGTGTTGCCTCTGATCAAGAGCATGGGAATCGAACACCATCTCACCAAAGAAGATGCACCAGAAAAAGAGATTTGTGACAAAGATGGGAGCTCAACTATCAACCCTGCACACAATGTTTGGACAACAAATGATGGACTCCTCACTTCTTGGCTACTAGATATCATTTCCCAAGATGTTATGAGTATGGTTGAAGGGATTAAAACAGCCTACCAGGTTTGGAAATTTCTAGAGAATCAATTACTTACGATGACCAAAGAAAGTGAGATCCATGTAAGTGAAACTTTTCTTACATTGAAAAAGGGATACCTAACGCTTGATGAATACTTGAAAAAATTCAAACACTTGTGTGATAAGCTTACTGCAATTAAGAAGCACTTAGATGATCTCACAAAAGTTCTTCATCTTGCTAGAGGTTTAGGTAGTAAATACCAAGGGTTTAGAACAGTCATGCTATCAAAAGCTCCCTATCACATCTTTAACCAATTTGTTTTGGCTCTTAAAGCACATGATCAGATGCTTTCAATTGAAAACGAAGATGATAAGTTGTCTTCAATCAACCACAATCATGCATACTACAGCCAAAGAGGAAGGAGCAGAGGTCGTGGTAGGCATTTCTTGTCCAAAGGAAGGGGATTTCCCCAAAACAGACCTCGAGGATAA

Coding sequence (CDS)

ATGGCAAACACAGAACAATTCCTCTCAATTCGATCATTTAATCAATGCACCAGTTTGATCTCAATCAAGTTTAATACTGGGAACTACCTGCTGTGGAAATCCCAAGTGTTGCCTCTGATCAAGAGCATGGGAATCGAACACCATCTCACCAAAGAAGATGCACCAGAAAAAGAGATTTGTGACAAAGATGGGAGCTCAACTATCAACCCTGCACACAATGTTTGGACAACAAATGATGGACTCCTCACTTCTTGGCTACTAGATATCATTTCCCAAGATGTTATGAGTATGGTTGAAGGGATTAAAACAGCCTACCAGGTTTGGAAATTTCTAGAGAATCAATTACTTACGATGACCAAAGAAAGTGAGATCCATGTAAGTGAAACTTTTCTTACATTGAAAAAGGGATACCTAACGCTTGATGAATACTTGAAAAAATTCAAACACTTGTGTGATAAGCTTACTGCAATTAAGAAGCACTTAGATGATCTCACAAAAGTTCTTCATCTTGCTAGAGGTTTAGGTAGTAAATACCAAGGGTTTAGAACAGTCATGCTATCAAAAGCTCCCTATCACATCTTTAACCAATTTGTTTTGGCTCTTAAAGCACATGATCAGATGCTTTCAATTGAAAACGAAGATGATAAGTTGTCTTCAATCAACCACAATCATGCATACTACAGCCAAAGAGGAAGGAGCAGAGGTCGTGGTAGGCATTTCTTGTCCAAAGGAAGGGGATTTCCCCAAAACAGACCTCGAGGATAA

Protein sequence

MANTEQFLSIRSFNQCTSLISIKFNTGNYLLWKSQVLPLIKSMGIEHHLTKEDAPEKEICDKDGSSTINPAHNVWTTNDGLLTSWLLDIISQDVMSMVEGIKTAYQVWKFLENQLLTMTKESEIHVSETFLTLKKGYLTLDEYLKKFKHLCDKLTAIKKHLDDLTKVLHLARGLGSKYQGFRTVMLSKAPYHIFNQFVLALKAHDQMLSIENEDDKLSSINHNHAYYSQRGRSRGRGRHFLSKGRGFPQNRPRG

Homology

[Close]

BLAST of MC11g_new0280 vs. NCBI nr
Match: XP_022154021.1 (uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncharacterized protein LOC111021379 [Momordica charantia])

HSP 1 Score: 304 bits (779), Expect = 3.21e-100
Identity = 152/247 (61.54%), Postives = 193/247 (78.14%), Query Frame = 0


Query: 1   MANTEQFLSIRSFNQCTSLISIKFNTGNYLLWKSQVLPLIKSMGIEHHLTKEDAPEKEIC 60
           MA  E  L+++SF+QC+SLIS+K N+ NYLLWKSQVLPLI+++G+EHHL +E     E  
Sbjct: 1   MALPENLLTVQSFHQCSSLISLKLNSSNYLLWKSQVLPLIRTLGLEHHLXEEAPVVDECK 60

Query: 61  DKDGSSTINPAHNVWTTNDGLLTSWLLDIISQDVMSMVEGIKTAYQVWKFLENQLLTMTK 120
            K+G S        W  NDGLLTSWLL II++DV++++EG +TA +VW  LE  LLTMTK
Sbjct: 61  GKEGESAXXTQVRTWINNDGLLTSWLLGIIAEDVLTLLEGTETAKEVWHSLEELLLTMTK 120

Query: 121 ESEIHVSETFLTLKKGYLTLDEYLKKFKHLCDKLTAIKKHLDDLTKVLHLARGLGSKYQG 180
           E+EIH++E  LTLKKG L++DEY++KFK+LCD+L A+KK LDDLTKV HLARGLG KY+ 
Sbjct: 121 ENEIHLNEALLTLKKGSLSMDEYIRKFKNLCDRLXAMKKPLDDLTKVFHLARGLGIKYKD 180

Query: 181 FRTVMLSKAPYHIFNQFVLALKAHDQMLSIENEDDKLSSINHNHAYYSQRGRSRGRGRHF 240
           FRT MLSKAPY  +NQFVLALKAHDQ L+ E E+++ S +N N A++S RGRSRGRGR F
Sbjct: 181 FRTAMLSKAPYPSYNQFVLALKAHDQFLTDE-EEERSSQVNLNQAFFSNRGRSRGRGRQF 240

Query: 241 LSKGRGF 247
            S+GRGF
Sbjct: 241 SSRGRGF 246

[Close]

BLAST of MC11g_new0280 vs. NCBI nr
Match: RVW93768.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 265 bits (676), Expect = 4.69e-78
Identity = 130/247 (52.63%), Postives = 178/247 (72.06%), Query Frame = 0


Query: 1   MANTEQFLSIRSFNQCTSLISIKFNTGNYLLWKSQVLPLIKSMGIEHHLTKEDAPEKEIC 60
           MAN E  LSI++F+QC+SL+SIK N  N LLW+SQVLPL++S+G+ HHL++     +E  
Sbjct: 1   MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 60

Query: 61  DKDGSSTINPAHNVWTTNDGLLTSWLLDIISQDVMSMVEGIKTAYQVWKFLENQLLTMTK 120
             +   T + +   W+ NDGLLTSWLL +++++VM +++G +TAY VW  L  +LL MTK
Sbjct: 61  GTETKETHDQSIETWSHNDGLLTSWLLGLMTKEVMLLLDGTETAYDVWNSLGEKLLPMTK 120

Query: 121 ESEIHVSETFLTLKKGYLTLDEYLKKFKHLCDKLTAIKKHLDDLTKVLHLARGLGSKYQG 180
           E E+ ++     +KKG  +LDEYL++FK +CD L A++K + DL KV  LA+GLG+KY  
Sbjct: 121 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 180

Query: 181 FRTVMLSKAPYHIFNQFVLALKAHDQMLSIENEDDKLSSINHNHAYYSQRGRSRGRGRHF 240
           FR  MLSK PY  +NQFVLAL+ H+QM+ IENE++K  SINH  AY++QRGR R RG  F
Sbjct: 181 FRVAMLSKPPYPSYNQFVLALQGHEQMIMIENEENK-ESINHEQAYFTQRGRGRNRGGRF 240

Query: 241 LSKGRGF 247
           LSKGRGF
Sbjct: 241 LSKGRGF 246

[Close]

BLAST of MC11g_new0280 vs. NCBI nr
Match: RVW82530.1 (hypothetical protein CK203_046287 [Vitis vinifera])

HSP 1 Score: 256 bits (655), Expect = 9.41e-77
Identity = 126/247 (51.01%), Postives = 174/247 (70.45%), Query Frame = 0


Query: 1   MANTEQFLSIRSFNQCTSLISIKFNTGNYLLWKSQVLPLIKSMGIEHHLTKEDAPEKEIC 60
           MAN E  LSI++F+QC+SL+SIK N  N LLW SQVLPL++ +G+ HHL++     +E  
Sbjct: 18  MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWGSQVLPLVRRLGLIHHLSENRHASEETM 77

Query: 61  DKDGSSTINPAHNVWTTNDGLLTSWLLDIISQDVMSMVEGIKTAYQVWKFLENQLLTMTK 120
             +   T + +   W+ NDGLLTSWLL +++++VM +++G KTAY VW  L  +LL MTK
Sbjct: 78  GTETKETHDHSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTKTAYDVWNSLGEKLLPMTK 137

Query: 121 ESEIHVSETFLTLKKGYLTLDEYLKKFKHLCDKLTAIKKHLDDLTKVLHLARGLGSKYQG 180
           E E+ ++     +KKG  +LDEYL++FK +CD L A++K + DL KV  LA+GLG+KY  
Sbjct: 138 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 197

Query: 181 FRTVMLSKAPYHIFNQFVLALKAHDQMLSIENEDDKLSSINHNHAYYSQRGRSRGRGRHF 240
           FR  MLSK PY  +NQFVLAL+ H+QM+  ENE++K  SINH   Y++QRGR R +G  F
Sbjct: 198 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENK-ESINHEQTYFTQRGRGRNQGGRF 257

Query: 241 LSKGRGF 247
           LS+GRGF
Sbjct: 258 LSRGRGF 263

[Close]

BLAST of MC11g_new0280 vs. NCBI nr
Match: RVW43526.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 263 bits (673), Expect = 1.31e-76
Identity = 129/247 (52.23%), Postives = 177/247 (71.66%), Query Frame = 0


Query: 1   MANTEQFLSIRSFNQCTSLISIKFNTGNYLLWKSQVLPLIKSMGIEHHLTKEDAPEKEIC 60
           MAN E  LSI++F+QC+SL+SIK N  N LLW+SQVLPL++S+G+ HHL++     KE  
Sbjct: 46  MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASKETM 105

Query: 61  DKDGSSTINPAHNVWTTNDGLLTSWLLDIISQDVMSMVEGIKTAYQVWKFLENQLLTMTK 120
             +   T + +   W+ NDGLLTSWLL +++++VM +++G +TAY VW  L  +LL MTK
Sbjct: 106 GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 165

Query: 121 ESEIHVSETFLTLKKGYLTLDEYLKKFKHLCDKLTAIKKHLDDLTKVLHLARGLGSKYQG 180
           E E+ ++     +KKG  +LDEYL++FK +CD L A++K + DL KV  LA+GLG+KY  
Sbjct: 166 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 225

Query: 181 FRTVMLSKAPYHIFNQFVLALKAHDQMLSIENEDDKLSSINHNHAYYSQRGRSRGRGRHF 240
           FR  MLSK PY  +NQFVLAL+ H+QM+  ENE++K  SINH  AY++QRGR R RG  F
Sbjct: 226 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENK-ESINHEQAYFTQRGRGRNRGGRF 285

Query: 241 LSKGRGF 247
           LS+GRGF
Sbjct: 286 LSRGRGF 291

[Close]

BLAST of MC11g_new0280 vs. NCBI nr
Match: RVW19921.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 260 bits (665), Expect = 1.48e-75
Identity = 127/247 (51.42%), Postives = 177/247 (71.66%), Query Frame = 0


Query: 1   MANTEQFLSIRSFNQCTSLISIKFNTGNYLLWKSQVLPLIKSMGIEHHLTKEDAPEKEIC 60
           MAN E  LSI++F+QC+SL+SIK N  N LLW+SQVLPL++S+G+ HHL++     +E  
Sbjct: 15  MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 74

Query: 61  DKDGSSTINPAHNVWTTNDGLLTSWLLDIISQDVMSMVEGIKTAYQVWKFLENQLLTMTK 120
             +   T + +   W+ NDGLLTSWLL +++++VM +++G +TAY VW  L  +LL MTK
Sbjct: 75  GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 134

Query: 121 ESEIHVSETFLTLKKGYLTLDEYLKKFKHLCDKLTAIKKHLDDLTKVLHLARGLGSKYQG 180
           E E+ ++     +KKG  +LDEYL++FK +CD L A++K + DL KV  LA+GLG+KY  
Sbjct: 135 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 194

Query: 181 FRTVMLSKAPYHIFNQFVLALKAHDQMLSIENEDDKLSSINHNHAYYSQRGRSRGRGRHF 240
           FR  MLSK PY  +NQFVLAL+ H+QM+  ENE++K  SINH  AY++QRGR R +G  F
Sbjct: 195 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENK-ESINHEQAYFTQRGRGRNQGGRF 254

Query: 241 LSKGRGF 247
           LS+GRGF
Sbjct: 255 LSRGRGF 260

[Close]

BLAST of MC11g_new0280 vs. ExPASy TrEMBL
Match: A0A6J1DMG5 (uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021379 PE=4 SV=1)

HSP 1 Score: 304 bits (779), Expect = 1.55e-100
Identity = 152/247 (61.54%), Postives = 193/247 (78.14%), Query Frame = 0


Query: 1   MANTEQFLSIRSFNQCTSLISIKFNTGNYLLWKSQVLPLIKSMGIEHHLTKEDAPEKEIC 60
           MA  E  L+++SF+QC+SLIS+K N+ NYLLWKSQVLPLI+++G+EHHL +E     E  
Sbjct: 1   MALPENLLTVQSFHQCSSLISLKLNSSNYLLWKSQVLPLIRTLGLEHHLXEEAPVVDECK 60

Query: 61  DKDGSSTINPAHNVWTTNDGLLTSWLLDIISQDVMSMVEGIKTAYQVWKFLENQLLTMTK 120
            K+G S        W  NDGLLTSWLL II++DV++++EG +TA +VW  LE  LLTMTK
Sbjct: 61  GKEGESAXXTQVRTWINNDGLLTSWLLGIIAEDVLTLLEGTETAKEVWHSLEELLLTMTK 120

Query: 121 ESEIHVSETFLTLKKGYLTLDEYLKKFKHLCDKLTAIKKHLDDLTKVLHLARGLGSKYQG 180
           E+EIH++E  LTLKKG L++DEY++KFK+LCD+L A+KK LDDLTKV HLARGLG KY+ 
Sbjct: 121 ENEIHLNEALLTLKKGSLSMDEYIRKFKNLCDRLXAMKKPLDDLTKVFHLARGLGIKYKD 180

Query: 181 FRTVMLSKAPYHIFNQFVLALKAHDQMLSIENEDDKLSSINHNHAYYSQRGRSRGRGRHF 240
           FRT MLSKAPY  +NQFVLALKAHDQ L+ E E+++ S +N N A++S RGRSRGRGR F
Sbjct: 181 FRTAMLSKAPYPSYNQFVLALKAHDQFLTDE-EEERSSQVNLNQAFFSNRGRSRGRGRQF 240

Query: 241 LSKGRGF 247
            S+GRGF
Sbjct: 241 SSRGRGF 246

[Close]

BLAST of MC11g_new0280 vs. ExPASy TrEMBL
Match: A0A438IAM2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3180 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 2.27e-78
Identity = 130/247 (52.63%), Postives = 178/247 (72.06%), Query Frame = 0


Query: 1   MANTEQFLSIRSFNQCTSLISIKFNTGNYLLWKSQVLPLIKSMGIEHHLTKEDAPEKEIC 60
           MAN E  LSI++F+QC+SL+SIK N  N LLW+SQVLPL++S+G+ HHL++     +E  
Sbjct: 1   MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 60

Query: 61  DKDGSSTINPAHNVWTTNDGLLTSWLLDIISQDVMSMVEGIKTAYQVWKFLENQLLTMTK 120
             +   T + +   W+ NDGLLTSWLL +++++VM +++G +TAY VW  L  +LL MTK
Sbjct: 61  GTETKETHDQSIETWSHNDGLLTSWLLGLMTKEVMLLLDGTETAYDVWNSLGEKLLPMTK 120

Query: 121 ESEIHVSETFLTLKKGYLTLDEYLKKFKHLCDKLTAIKKHLDDLTKVLHLARGLGSKYQG 180
           E E+ ++     +KKG  +LDEYL++FK +CD L A++K + DL KV  LA+GLG+KY  
Sbjct: 121 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 180

Query: 181 FRTVMLSKAPYHIFNQFVLALKAHDQMLSIENEDDKLSSINHNHAYYSQRGRSRGRGRHF 240
           FR  MLSK PY  +NQFVLAL+ H+QM+ IENE++K  SINH  AY++QRGR R RG  F
Sbjct: 181 FRVAMLSKPPYPSYNQFVLALQGHEQMIMIENEENK-ESINHEQAYFTQRGRGRNRGGRF 240

Query: 241 LSKGRGF 247
           LSKGRGF
Sbjct: 241 LSKGRGF 246

[Close]

BLAST of MC11g_new0280 vs. ExPASy TrEMBL
Match: A0A438HDK5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_046287 PE=4 SV=1)

HSP 1 Score: 256 bits (655), Expect = 4.55e-77
Identity = 126/247 (51.01%), Postives = 174/247 (70.45%), Query Frame = 0


Query: 1   MANTEQFLSIRSFNQCTSLISIKFNTGNYLLWKSQVLPLIKSMGIEHHLTKEDAPEKEIC 60
           MAN E  LSI++F+QC+SL+SIK N  N LLW SQVLPL++ +G+ HHL++     +E  
Sbjct: 18  MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWGSQVLPLVRRLGLIHHLSENRHASEETM 77

Query: 61  DKDGSSTINPAHNVWTTNDGLLTSWLLDIISQDVMSMVEGIKTAYQVWKFLENQLLTMTK 120
             +   T + +   W+ NDGLLTSWLL +++++VM +++G KTAY VW  L  +LL MTK
Sbjct: 78  GTETKETHDHSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTKTAYDVWNSLGEKLLPMTK 137

Query: 121 ESEIHVSETFLTLKKGYLTLDEYLKKFKHLCDKLTAIKKHLDDLTKVLHLARGLGSKYQG 180
           E E+ ++     +KKG  +LDEYL++FK +CD L A++K + DL KV  LA+GLG+KY  
Sbjct: 138 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 197

Query: 181 FRTVMLSKAPYHIFNQFVLALKAHDQMLSIENEDDKLSSINHNHAYYSQRGRSRGRGRHF 240
           FR  MLSK PY  +NQFVLAL+ H+QM+  ENE++K  SINH   Y++QRGR R +G  F
Sbjct: 198 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENK-ESINHEQTYFTQRGRGRNQGGRF 257

Query: 241 LSKGRGF 247
           LS+GRGF
Sbjct: 258 LSRGRGF 263

[Close]

BLAST of MC11g_new0280 vs. ExPASy TrEMBL
Match: A0A438E6Z5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1575 PE=4 SV=1)

HSP 1 Score: 263 bits (673), Expect = 6.35e-77
Identity = 129/247 (52.23%), Postives = 177/247 (71.66%), Query Frame = 0


Query: 1   MANTEQFLSIRSFNQCTSLISIKFNTGNYLLWKSQVLPLIKSMGIEHHLTKEDAPEKEIC 60
           MAN E  LSI++F+QC+SL+SIK N  N LLW+SQVLPL++S+G+ HHL++     KE  
Sbjct: 46  MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASKETM 105

Query: 61  DKDGSSTINPAHNVWTTNDGLLTSWLLDIISQDVMSMVEGIKTAYQVWKFLENQLLTMTK 120
             +   T + +   W+ NDGLLTSWLL +++++VM +++G +TAY VW  L  +LL MTK
Sbjct: 106 GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 165

Query: 121 ESEIHVSETFLTLKKGYLTLDEYLKKFKHLCDKLTAIKKHLDDLTKVLHLARGLGSKYQG 180
           E E+ ++     +KKG  +LDEYL++FK +CD L A++K + DL KV  LA+GLG+KY  
Sbjct: 166 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 225

Query: 181 FRTVMLSKAPYHIFNQFVLALKAHDQMLSIENEDDKLSSINHNHAYYSQRGRSRGRGRHF 240
           FR  MLSK PY  +NQFVLAL+ H+QM+  ENE++K  SINH  AY++QRGR R RG  F
Sbjct: 226 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENK-ESINHEQAYFTQRGRGRNRGGRF 285

Query: 241 LSKGRGF 247
           LS+GRGF
Sbjct: 286 LSRGRGF 291

[Close]

BLAST of MC11g_new0280 vs. ExPASy TrEMBL
Match: A0A438C9J9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1040 PE=4 SV=1)

HSP 1 Score: 260 bits (665), Expect = 7.16e-76
Identity = 127/247 (51.42%), Postives = 177/247 (71.66%), Query Frame = 0


Query: 1   MANTEQFLSIRSFNQCTSLISIKFNTGNYLLWKSQVLPLIKSMGIEHHLTKEDAPEKEIC 60
           MAN E  LSI++F+QC+SL+SIK N  N LLW+SQVLPL++S+G+ HHL++     +E  
Sbjct: 15  MANPENVLSIQAFHQCSSLVSIKLNMSNLLLWRSQVLPLVRSLGLIHHLSENRHASEETM 74

Query: 61  DKDGSSTINPAHNVWTTNDGLLTSWLLDIISQDVMSMVEGIKTAYQVWKFLENQLLTMTK 120
             +   T + +   W+ NDGLLTSWLL +++++VM +++G +TAY VW  L  +LL MTK
Sbjct: 75  GTETKETHDQSIETWSHNDGLLTSWLLGLMTEEVMLLLDGTETAYDVWNSLGEKLLPMTK 134

Query: 121 ESEIHVSETFLTLKKGYLTLDEYLKKFKHLCDKLTAIKKHLDDLTKVLHLARGLGSKYQG 180
           E E+ ++     +KKG  +LDEYL++FK +CD L A++K + DL KV  LA+GLG+KY  
Sbjct: 135 EKEVQLTNRLRGVKKGTRSLDEYLREFKGICDALAAVRKPVSDLDKVFQLAQGLGTKYMD 194

Query: 181 FRTVMLSKAPYHIFNQFVLALKAHDQMLSIENEDDKLSSINHNHAYYSQRGRSRGRGRHF 240
           FR  MLSK PY  +NQFVLAL+ H+QM+  ENE++K  SINH  AY++QRGR R +G  F
Sbjct: 195 FRVAMLSKPPYPSYNQFVLALQGHEQMIMTENEENK-ESINHEQAYFTQRGRGRNQGGRF 254

Query: 241 LSKGRGF 247
           LS+GRGF
Sbjct: 255 LSRGRGF 260

The following BLAST results are available for this feature:

BLAST of MC11g_new0280 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154021.1	3.21e-100	61.54	uncharacterized protein LOC111021379 [Momordica charantia] >XP_022154022.1 uncha...	[more]
RVW93768.1	4.69e-78	52.63	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW82530.1	9.41e-77	51.01	hypothetical protein CK203_046287 [Vitis vinifera]	[more]
RVW43526.1	1.31e-76	52.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW19921.1	1.48e-75	51.42	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of MC11g_new0280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMG5	1.55e-100	61.54	uncharacterized protein LOC111021379 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A438IAM2	2.27e-78	52.63	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438HDK5	4.55e-77	51.01	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_046287 PE=4 SV=1	[more]
A0A438E6Z5	6.35e-77	52.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438C9J9	7.16e-76	51.42	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]

BLAST of MC11g_new0280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 75..200 e-value: 1.1E-14 score: 54.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 226..254
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 65..250
None	No IPR available	PANTHER	PTHR47481:SF2	SUBFAMILY NOT NAMED	coord: 65..250

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0280.1	MC11g_new0280.1	mRNA