MC11g_new0107 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g_new0107
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptioncalcium homeostasis endoplasmic reticulum protein
LocationMC11: 4106663 .. 4110514 (-)
RNA-Seq ExpressionMC11g_new0107
SyntenyMC11g_new0107
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTACAAATGCGTTTACCGCAGGTTCGGAAAATGATACAAACCACCTAAAAGAAAGTTTTCAATTTAGTTATATGACCCAACAAGAGCGACGATATAAAAAGAATTTTGGAAATAGAAGAGAATAAATGGGGGAGGGAAGGGAAAATGGAAGAGGAATTATTATAATTTTACAGTTATTGAATAAGAAAAATAGAAGAAGAGAAAGAAAATCGAAAAAAAGAGTAACAATAAATAAAAAAAATGAGAAAAGGCATAATAGTTCGAAAAAAAAAATACTTTTACCATTGTAATCTGGAATGATTTTTTTATTTTTTAATTCGAGTTGTTCAAATTAGAATGGACGTAAATTTCGGACGCGTAAATCTCAGCAGCAAGCGATGGCCGAGCTCGCCGGAGCGGCGGTGGAATTGCGAGAAGGAAGAGAGTCAAGGAAGGTAGCACCGAGAAAGTGTGTGAAGCAGCTCGGATTCAGGTCTGAAAGACTACGCTGGTGAGTGTCTGTATGTTATAGCACTTGACAATTTTTAATTTTACCGGTATGGAAGAACTTCCGATTTGTTGCTGAGATTTTTATGACCGAGAGAATGCATCAAACTCCTTTTGCTTCACCATCAACAAGCTTTTGGTGTGCCTGATCGGTCGGATTATAATCAATCTTCGAAATCTTTTAAAGGGCTTTCTGGACCTCTTCCTTCTGATGTTGCTACGGAGTTAAACAATGTCCTTAGTAATCCCACAGGTGCTAATTAAGAATCAATTAGTGGTGTTAAAACTTGGTTCATGCCTCGGTCTTCTTTTGCTCCCATGATATTTTGCATAGATGATTCTGAGAAGCAACTTCATATAATATACTTTTTCAGTGACATTTTTTTAGAGGTACACACCATCGTATGACTGCTTCTATTACTGTTTTTTCAAATTTATGATTGCTCGGTTTAATGCAACTAGCATGCTGCAGAGTTCAGGATTGTGAAATGCATTGATAATCTTCAGGGAACTTCGTTTCCTGCTCACATTTAGTTGTCGAGTTTTTTTTGTTTGTTCTGATAGAAGTTCTACTCAATATGAATTGTGTCGACTAACTAATCTGATAGCAGTACCACAATATAATTATGTGAGATATATGAAAATTTTCCCCCATTAATCTGTCTTCCAAATTTTGCAGCATGATGCAAAGAATCGACATAATTGACCACGACAATGAAGCTCTAGCACTTAGACCAGTTTTAGGTTCACAACCCCTCAAATGAAGGAGGAAAGTCAGTTGAAATTACAAAAGTTTGGTACAGTTCTGGGCGTTCAAGGAGATCTATGATCAGGATACTATTGGTGCACTTGAGGATGAAATAATTAATGGGGTACCAGCTAGGACTTTGCCAGGGCTTCCAAAAGAGCTGCCCGCTTCAATAGATTCGGCTCCTGCTAGGCCACTCTCTCCTGTTTTACAGCTTTTTATGCATTCGCTTCTGTTCTCATTGCAGGTTATTATGCTGAGAAATGATATTTTCTAGTAAAATGGGAAATGATCTTTGTTAAACTTCTTTTTGGCGTGCAGGATTGACACAACATTCAAATAGCCATACCGTGCACCAGTGGCAACCTGACAGGCTAAAGTGCCGTTCCAAGTTTTCCCGATCCAGAACACCTCGATAAGCCTATCACCCTGGGCCAAGCACTGTCAAGATCCATTACACCACAGCAATTTTTACCAAATACAATACCCGCTGCTGCCTGCTTTTGTAAACTCCATGCCTTTGCCAATTTCTGTTCATTAACGCCACCACAGCTTGCTGCTGTGGGTGAAAATTTGCCACCATATCCTTTGTTCCCTCCTGGTATTATTCCTGGAATGGTGAGGAAGATGCATATTGGAAGTGGGGTCCCATACTCTCCCATGAGCCCTCTGGATATTCCAACTATAATTCCTCCATCCAATATATCTCCCTCAGAAGTTCTTGAGAGAGAGTCTAAGTTCTTTAAAGAGATTGGAGAGGTTAATCCCTCGTAAGGACCCATGAGTTCTGATACCAAATTTACTCAAATTTACAATTATGAGCATGAGAGAGAACCGCCAGTATGCAAGGGTGGAGCTTGAGTTCCTCCTCCCAACCTTCTGGTTGATCCAGAGACTGGTGCTTACGCTGACGGGAGTGTAAATCGGGAAGGTTAAGACTTGGAGCAACACTCAATCCAAATGGGAATAGTCAATATGATGATGTTTATACTTCTTATAGGAAGCAAAGAGATTCCACTTACCATTCCTCTATGAGTGTTAGGGCAACAACAAAGTGAAAAAAGAACCGTTGAACTCATTACTAGGAGTGACCATAGTTTGGAACATGTAACATACCAGCCTTTTTCTGTTTACTTCTAAGTTTTGCTGGATTTCGAGAAATTTGACCATTTTTAGGTCATTAGCACTGAACTTGCTCAGTTGAATTGTATATTTAGTTCTAATCTTAAGAATCACTTTCCAGGCGGATAAACACTATGAAATGAGGCTTGCTTTTTTTGACTGATTTCTTTGGTTCATTGAATAGTGAATTTCGTCTTGTGCCCAAATGTTATACAACATTTTACTGACTCAATTATATGGAAATTTCTCCTTGCAGCATATTTCTTTTGGGTACTTCATGGAACTCACAAGGATGTCTTATTTGGCAAAAGCAAATTCAAAGTAACATTTCCTTACCTTACCTTCACTCTCACACATTTGTATCTGTTCATAAATTTCCATTTTTTCTTTTTTTAAGAAACGAGAAGTGTACTAAACCCAAAAAAGAAGCAAACAACCGTGGGTAGAGAAAATCCCCGCCCAAAGAACTACATAAGCAAAGCCTTGCAATTGTTCCTTGTCACATATTTCTTAGGTTCATAGCTAAATTTACGAAAATGTTAGAGAGATATGATGCGAATGTGACATTTTGGTCTAAAATGTTAATCATCTCAGTTTCTCTAGAGCTTTTATTGTCAAATCATACTTCTCTTACTTCTCATAAACAACATTTGTACCGACATTTGTTTTGCGAAGACGAACGTCGACGTCAAATGTCTATTAAATGCTGTTTCAAATATGGAATGTTGATTTTGATGTATCGCAGATTTCAAAAAAGGCAGTGTGAAGATCTTCACAAGTACAAATAGATCATGTAGCCGACAGAAGAATAGTTTGGAAGAAACCTCCAAGTTCACTTTCAATGCCCAAAGTGAATGCCTGTCTACTGAGATTCCAAGCCCATTGCCATTGGACTCTTTCAAGATTTCTATATTGAGCTTTGTAAAGTTCCCTCGGGACAGTCTTATGGGAAAAAGGCTTTCCAATTCCTCACCATTTTTGTTCACTCCAAGGCAAGAATCAGATGGTAACAATTTTCCACTCCATTCTCTGTTCTGCTGTGTATTTTAACCTTTTTCCTGAATCAAATAGGTATTGGACATATCTACTCCCTTATTTGAATTTAAAAAGAAAAATATAATCTTTTTAATGTTTATTTTGATTTTTCTTTTAATACCCCAGAGATGAGATGAGGGTGGATAATATAAAGTTGATGAAATTTTTTTTAGTACACCAAATTGAGCATACAGAGTTTGAACTTTCGACAACAAGGGAAGGCGCGAGGGCTAGAAAAATCAGTGTAAAATGTATATTGCACGTATGTTCTATTAAAATTTTTTTATCCATTTTTGTTATTGTATTATTTTTTTAATATAATAAATTGGAGATATGGGAGTTTGAATATTCAATATCAATAAAAGGATAATGTATAAATTATTGCTAAACTATGCTTATGTTGACATCTTAATTGTTTTATATGATTGTTCTACTACACCATATCAAAATATCACTCGAC

mRNA sequence

ATGGTGAGGAAGATGCATATTGGAAGTGGGGTCCCATACTCTCCCATGAGCCCTCTGGATATTCCAACTATAATTCCTCCATCCAATATATCTCCCTCAGAAGTTCTTGAGAGAGAGTCTAAGTTCTTTAAAGAGATTGGAGAGGTTAATCCCTCGTAA

Coding sequence (CDS)

ATGGTGAGGAAGATGCATATTGGAAGTGGGGTCCCATACTCTCCCATGAGCCCTCTGGATATTCCAACTATAATTCCTCCATCCAATATATCTCCCTCAGAAGTTCTTGAGAGAGAGTCTAAGTTCTTTAAAGAGATTGGAGAGGTTAATCCCTCGTAA

Protein sequence

MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS
Homology
[Close]
BLAST of MC11g_new0107 vs. NCBI nr
Match: KDO63368.1 (hypothetical protein CISIN_1g0404431mg, partial [Citrus sinensis])

HSP 1 Score: 100 bits (249), Expect = 2.74e-23
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS 52
           MVRKM IGSGVPYSPMSPLDIPT+IPPSN+SPSEVLER SKFFKEIGEVNPS
Sbjct: 264 MVRKMQIGSGVPYSPMSPLDIPTVIPPSNVSPSEVLERVSKFFKEIGEVNPS 315

[Close]
BLAST of MC11g_new0107 vs. NCBI nr
Match: XP_022157442.1 (calcium homeostasis endoplasmic reticulum protein [Momordica charantia] >XP_022157443.1 calcium homeostasis endoplasmic reticulum protein [Momordica charantia])

HSP 1 Score: 101 bits (251), Expect = 3.14e-23
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS 52
           MVRKM IGSGVPYSPMSPLDIPTIIPPSNISPSEVLER SKFFKEIGEVNPS
Sbjct: 533 MVRKMQIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERVSKFFKEIGEVNPS 584

[Close]
BLAST of MC11g_new0107 vs. NCBI nr
Match: XP_038897955.1 (calcium homeostasis endoplasmic reticulum protein [Benincasa hispida])

HSP 1 Score: 101 bits (251), Expect = 3.15e-23
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS 52
           MVRKM IGSGVPYSPMSPLDIPTIIPPSNISPSEVLER SKFFKEIGEVNPS
Sbjct: 539 MVRKMQIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERVSKFFKEIGEVNPS 590

[Close]
BLAST of MC11g_new0107 vs. NCBI nr
Match: GFZ06058.1 (SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [Actinidia rufa])

HSP 1 Score: 94.7 bits (234), Expect = 3.33e-23
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 1  MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS 52
          MVRKM IGSGVPYSPMSPLDIPT IPPS++SPSEVLER SKFFK IGEVNPS
Sbjct: 15 MVRKMQIGSGVPYSPMSPLDIPTAIPPSSVSPSEVLERVSKFFKAIGEVNPS 66

[Close]
BLAST of MC11g_new0107 vs. NCBI nr
Match: MBA0597919.1 (hypothetical protein [Gossypium raimondii])

HSP 1 Score: 99.0 bits (245), Expect = 5.55e-23
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS 52
           MVRKM IGSGVPYSP+SPLDIPT+IPPSN+SPSE+LER SKFFKEIGEVNPS
Sbjct: 204 MVRKMQIGSGVPYSPLSPLDIPTVIPPSNVSPSEILERVSKFFKEIGEVNPS 255

[Close]
BLAST of MC11g_new0107 vs. ExPASy TrEMBL
Match: A0A067F7P7 (CID domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0404431mg PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 1.33e-23
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS 52
           MVRKM IGSGVPYSPMSPLDIPT+IPPSN+SPSEVLER SKFFKEIGEVNPS
Sbjct: 264 MVRKMQIGSGVPYSPMSPLDIPTVIPPSNVSPSEVLERVSKFFKEIGEVNPS 315

[Close]
BLAST of MC11g_new0107 vs. ExPASy TrEMBL
Match: A0A6J1DTD5 (calcium homeostasis endoplasmic reticulum protein OS=Momordica charantia OX=3673 GN=LOC111024140 PE=4 SV=1)

HSP 1 Score: 101 bits (251), Expect = 1.52e-23
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS 52
           MVRKM IGSGVPYSPMSPLDIPTIIPPSNISPSEVLER SKFFKEIGEVNPS
Sbjct: 533 MVRKMQIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERVSKFFKEIGEVNPS 584

[Close]
BLAST of MC11g_new0107 vs. ExPASy TrEMBL
Match: A0A7J0G5J4 (SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_18g0002280 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.61e-23
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 0 

Query: 1  MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS 52
          MVRKM IGSGVPYSPMSPLDIPT IPPS++SPSEVLER SKFFK IGEVNPS
Sbjct: 15 MVRKMQIGSGVPYSPMSPLDIPTAIPPSSVSPSEVLERVSKFFKAIGEVNPS 66

[Close]
BLAST of MC11g_new0107 vs. ExPASy TrEMBL
Match: A0A5B7BRP5 (Putative calcium homeostasis endoplasmic reticulum protein-like isoform X1 (Fragment) OS=Davidia involucrata OX=16924 GN=Din_041091 PE=4 SV=1)

HSP 1 Score: 100 bits (249), Expect = 2.64e-23
Identity = 48/52 (92.31%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS 52
           MVRKM IGSGVPYSPMSPLDIPT+IPPSNISPSE+LER SKFFKEIGEVNPS
Sbjct: 416 MVRKMQIGSGVPYSPMSPLDIPTVIPPSNISPSEILERVSKFFKEIGEVNPS 467

[Close]
BLAST of MC11g_new0107 vs. ExPASy TrEMBL
Match: A0A7J8Q8P2 (CID domain-containing protein OS=Gossypium raimondii OX=29730 GN=Gorai_007700 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.69e-23
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1   MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS 52
           MVRKM IGSGVPYSP+SPLDIPT+IPPSN+SPSE+LER SKFFKEIGEVNPS
Sbjct: 204 MVRKMQIGSGVPYSPLSPLDIPTVIPPSNVSPSEILERVSKFFKEIGEVNPS 255

[Close]
BLAST of MC11g_new0107 vs. TAIR 10
Match: AT4G31200.2 (SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein )

HSP 1 Score: 91.3 bits (225), Expect = 2.5e-19
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1   MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS 53
           MVRKM IGSGVPYSP+SPLDIPT+IPPS+   SEVLER SKFFKEIGEVNPS
Sbjct: 502 MVRKMQIGSGVPYSPLSPLDIPTVIPPSDTPQSEVLERVSKFFKEIGEVNPS 553

[Close]
BLAST of MC11g_new0107 vs. TAIR 10
Match: AT4G31200.3 (SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein )

HSP 1 Score: 91.3 bits (225), Expect = 2.5e-19
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1   MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS 53
           MVRKM IGSGVPYSP+SPLDIPT+IPPS+   SEVLER SKFFKEIGEVNPS
Sbjct: 502 MVRKMQIGSGVPYSPLSPLDIPTVIPPSDTPQSEVLERVSKFFKEIGEVNPS 553

[Close]
BLAST of MC11g_new0107 vs. TAIR 10
Match: AT4G31200.1 (SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein )

HSP 1 Score: 91.3 bits (225), Expect = 2.5e-19
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0 

Query: 1   MVRKMHIGSGVPYSPMSPLDIPTIIPPSNISPSEVLERESKFFKEIGEVNPS 53
           MVRKM IGSGVPYSP+SPLDIPT+IPPS+   SEVLER SKFFKEIGEVNPS
Sbjct: 502 MVRKMQIGSGVPYSPLSPLDIPTVIPPSDTPQSEVLERVSKFFKEIGEVNPS 553

The following BLAST results are available for this feature:
BLAST of MC11g_new0107 vs.
Match NameE-valueIdentityDescription
BLAST of MC11g_new0107 vs. NCBI nr
Match NameE-valueIdentityDescription
KDO63368.12.74e-2392.31hypothetical protein CISIN_1g0404431mg, partial [Citrus sinensis][more]
XP_022157442.13.14e-2396.15calcium homeostasis endoplasmic reticulum protein [Momordica charantia] >XP_0221... [more]
XP_038897955.13.15e-2396.15calcium homeostasis endoplasmic reticulum protein [Benincasa hispida][more]
GFZ06058.13.33e-2388.46SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [A... [more]
MBA0597919.15.55e-2388.46hypothetical protein [Gossypium raimondii][more]
BLAST of MC11g_new0107 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A067F7P71.33e-2392.31CID domain-containing protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0... [more]
A0A6J1DTD51.52e-2396.15calcium homeostasis endoplasmic reticulum protein OS=Momordica charantia OX=3673... [more]
A0A7J0G5J41.61e-2388.46SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein OS... [more]
A0A5B7BRP52.64e-2392.31Putative calcium homeostasis endoplasmic reticulum protein-like isoform X1 (Frag... [more]
A0A7J8Q8P22.69e-2388.46CID domain-containing protein OS=Gossypium raimondii OX=29730 GN=Gorai_007700 PE... [more]
BLAST of MC11g_new0107 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G31200.22.5e-1984.62SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [more]
AT4G31200.32.5e-1984.62SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [more]
AT4G31200.12.5e-1984.62SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g_new0107.1MC11g_new0107.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006874 cellular calcium ion homeostasis
biological_process GO:0006397 mRNA processing
cellular_component GO:0048471 perinuclear region of cytoplasm
molecular_function GO:0003723 RNA binding