MC11g1444 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1444
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Photosystem I P700 chlorophyll a apoprotein A2
Location	MC11: 19251678 .. 19251815 (-)
RNA-Seq Expression	MC11g1444
Synteny	MC11g1444

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTAATTTGATTCGATGGAGAGATAAACCTGTGGCTCTTTCCATTGTCCAAGCAAGATTAGTTGGATTAGCGTGGATATCGAGGTTCCACAAGCGGTACTCCCTGATACTGAGTTGTGGAATTTCAACTAGATTTGGA

mRNA sequence

GCTAATTTGATTCGATGGAGAGATAAACCTGTGGCTCTTTCCATTGTCCAAGCAAGATTAGTTGGATTAGCGTGGATATCGAGGTTCCACAAGCGGTACTCCCTGATACTGAGTTGTGGAATTTCAACTAGATTTGGA

Coding sequence (CDS)

GCTAATTTGATTCGATGGAGAGATAAACCTGTGGCTCTTTCCATTGTCCAAGCAAGATTAGTTGGATTAGCGTGGATATCGAGGTTCCACAAGCGGTACTCCCTGATACTGAGTTGTGGAATTTCAACTAGATTTGGA

Protein sequence

ANLIRWRDKPVALSIVQARLVGLAWISRFHKRYSLILSCGISTRFG

Homology

[Close]

BLAST of MC11g1444 vs. ExPASy Swiss-Prot
Match: Q3V535 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Acorus calamus OX=4465 GN=psaB PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-07
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1   ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 47
           ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 688 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of MC11g1444 vs. ExPASy Swiss-Prot
Match: A1EA07 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Agrostis stolonifera OX=63632 GN=psaB PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-07
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1   ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 47
           ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 688 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of MC11g1444 vs. ExPASy Swiss-Prot
Match: Q70Y04 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Amborella trichopoda OX=13333 GN=psaB PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-07
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1   ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 47
           ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 688 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of MC11g1444 vs. ExPASy Swiss-Prot
Match: Q33332 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Antirrhinum majus OX=4151 GN=psaB PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-07
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1   ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 47
           ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 688 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of MC11g1444 vs. ExPASy Swiss-Prot
Match: Q8S8X5 (Photosystem I P700 chlorophyll a apoprotein A2 OS=Atropa belladonna OX=33113 GN=psaB PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-07
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1   ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 47
           ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 688 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

[Close]

BLAST of MC11g1444 vs. NCBI nr
Match: WP_156524861.1 (hypothetical protein, partial [Paenarthrobacter nicotinovorans])

HSP 1 Score: 53.9 bits (128), Expect = 3.97e-08
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 46
          ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 8  ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 54

[Close]

BLAST of MC11g1444 vs. NCBI nr
Match: AAL79470.1 (PsaB, partial [Phaseolus vulgaris] >AAL79473.1 PsaB, partial [Phaseolus vulgaris] >AAL79475.1 PsaB, partial [Phaseolus vulgaris] >AAL79477.1 PsaB, partial [Phaseolus vulgaris] >AAL79479.1 PsaB, partial [Phaseolus vulgaris])

HSP 1 Score: 53.9 bits (128), Expect = 4.35e-08
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 46
          ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 12 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 58

[Close]

BLAST of MC11g1444 vs. NCBI nr
Match: ACF37003.1 (PsaB, partial [Lippia alba] >ACF37037.1 PsaB, partial [Lippia origanoides] >ACF37061.1 PsaB, partial [Aloysia triphylla] >ACF37069.1 PsaB, partial [Phyla dulcis] >ACK38270.1 PsaB, partial [Phaseolus novoleonensis] >ACK38272.1 PsaB, partial [Phaseolus lunatus] >ACK38278.1 PsaB, partial [Phaseolus pachyrrhizoides])

HSP 1 Score: 53.9 bits (128), Expect = 4.88e-08
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 46
          ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 17 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 63

[Close]

BLAST of MC11g1444 vs. NCBI nr
Match: ACF36991.1 (PsaB, partial [Lippia alba] >ACF37043.1 PsaB, partial [Lippia origanoides] >ACF37067.1 PsaB, partial [Phyla dulcis] >ACF36999.1 PsaB, partial [Lippia alba] >ACF37001.1 PsaB, partial [Lippia alba])

HSP 1 Score: 53.9 bits (128), Expect = 5.00e-08
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 46
          ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 18 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 64

[Close]

BLAST of MC11g1444 vs. NCBI nr
Match: RYR01979.1 (hypothetical protein Ahy_B06g080840 isoform B [Arachis hypogaea])

HSP 1 Score: 54.7 bits (130), Expect = 5.13e-08
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 46
          ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 49 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSNKFG 95

[Close]

BLAST of MC11g1444 vs. ExPASy TrEMBL
Match: Q8LVW7 (PsaB (Fragment) OS=Phaseolus vulgaris OX=3885 GN=psaB PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.11e-08
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 46
          ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 12 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 58

[Close]

BLAST of MC11g1444 vs. ExPASy TrEMBL
Match: B8R8K0 (PsaB (Fragment) OS=Phaseolus lunatus OX=3884 GN=psaB PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.36e-08
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 46
          ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 17 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 63

[Close]

BLAST of MC11g1444 vs. ExPASy TrEMBL
Match: B4ZXH6 (PsaB (Fragment) OS=Lippia alba OX=320345 GN=psaB PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.36e-08
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 46
          ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 17 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 63

[Close]

BLAST of MC11g1444 vs. ExPASy TrEMBL
Match: B4ZXL0 (PsaB (Fragment) OS=Lippia origanoides OX=542673 GN=psaB PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.36e-08
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 46
          ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 17 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 63

[Close]

BLAST of MC11g1444 vs. ExPASy TrEMBL
Match: B8R8J8 (PsaB (Fragment) OS=Phaseolus novoleonensis OX=378483 GN=psaB PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.36e-08
Identity = 30/47 (63.83%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1  ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 46
          ANLIRWRDKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 17 ANLIRWRDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 63

[Close]

BLAST of MC11g1444 vs. TAIR 10
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein )

HSP 1 Score: 52.8 bits (125), Expect = 8.7e-08
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 1   ANLIRWRDKPVALSIVQARLVGLAWIS-RFHKRYSLILSCGISTRFG 47
           ANLIRW+DKPVALSIVQARLVGLA  S  +   Y+  L    S +FG
Sbjct: 688 ANLIRWKDKPVALSIVQARLVGLAHFSVGYIFTYAAFLIASTSGKFG 734

The following BLAST results are available for this feature:

BLAST of MC11g1444 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3V535	5.5e-07	63.83	Photosystem I P700 chlorophyll a apoprotein A2 OS=Acorus calamus OX=4465 GN=psaB...	[more]
A1EA07	5.5e-07	63.83	Photosystem I P700 chlorophyll a apoprotein A2 OS=Agrostis stolonifera OX=63632 ...	[more]
Q70Y04	5.5e-07	63.83	Photosystem I P700 chlorophyll a apoprotein A2 OS=Amborella trichopoda OX=13333 ...	[more]
Q33332	5.5e-07	63.83	Photosystem I P700 chlorophyll a apoprotein A2 OS=Antirrhinum majus OX=4151 GN=p...	[more]
Q8S8X5	5.5e-07	63.83	Photosystem I P700 chlorophyll a apoprotein A2 OS=Atropa belladonna OX=33113 GN=...	[more]

BLAST of MC11g1444 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_156524861.1	3.97e-08	63.83	hypothetical protein, partial [Paenarthrobacter nicotinovorans]	[more]
AAL79470.1	4.35e-08	63.83	PsaB, partial [Phaseolus vulgaris] >AAL79473.1 PsaB, partial [Phaseolus vulgaris...	[more]
ACF37003.1	4.88e-08	63.83	PsaB, partial [Lippia alba] >ACF37037.1 PsaB, partial [Lippia origanoides] >ACF3...	[more]
ACF36991.1	5.00e-08	63.83	PsaB, partial [Lippia alba] >ACF37043.1 PsaB, partial [Lippia origanoides] >ACF3...	[more]
RYR01979.1	5.13e-08	63.83	hypothetical protein Ahy_B06g080840 isoform B [Arachis hypogaea]	[more]

BLAST of MC11g1444 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q8LVW7	2.11e-08	63.83	PsaB (Fragment) OS=Phaseolus vulgaris OX=3885 GN=psaB PE=4 SV=1	[more]
B8R8K0	2.36e-08	63.83	PsaB (Fragment) OS=Phaseolus lunatus OX=3884 GN=psaB PE=4 SV=1	[more]
B4ZXH6	2.36e-08	63.83	PsaB (Fragment) OS=Lippia alba OX=320345 GN=psaB PE=4 SV=1	[more]
B4ZXL0	2.36e-08	63.83	PsaB (Fragment) OS=Lippia origanoides OX=542673 GN=psaB PE=4 SV=1	[more]
B8R8J8	2.36e-08	63.83	PsaB (Fragment) OS=Phaseolus novoleonensis OX=378483 GN=psaB PE=4 SV=1	[more]

BLAST of MC11g1444 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00340.1	8.7e-08	61.70	Photosystem I, PsaA/PsaB protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036408	Photosystem I PsaA/PsaB superfamily	GENE3D	1.20.1130.10	Photosystem I PsaA/PsaB	coord: 1..46 e-value: 2.1E-6 score: 28.0
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 2..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1444.1	MC11g1444.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0003735	structural constituent of ribosome