MC11g1412 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1412
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	F-box/LRR-repeat protein At3g26922-like isoform X2
Location	MC11: 18677511 .. 18677780 (+)
RNA-Seq Expression	MC11g1412
Synteny	MC11g1412

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTTTTGAAATCTCTTGAGATTAATAATGAATCGAATAGCTATGTGAAACTTGAGGGAGACATGTTTAAAAGCTGCCCACTTCTCCAACGTTTGGTTATGCGAGGTCGTTTGTTCGCACGTGTGAAAGTCACTGCTCCGAAACTTGAATATTTGCCAATCACGAGGTTGATTCATTATTGTGATGATTGGTTTCCAGGGATTGTGTTGTATACACCTCAGCTGGCATCCGTAAAATTTGAAAGTGTTCTGCCATTTTTGTTCTCAACT

mRNA sequence

AAGTTTTTGAAATCTCTTGAGATTAATAATGAATCGAATAGCTATGTGAAACTTGAGGGAGACATGTTTAAAAGCTGCCCACTTCTCCAACGTTTGGTTATGCGAGGTCGTTTGTTCGCACGTGTGAAAGTCACTGCTCCGAAACTTGAATATTTGCCAATCACGAGGTTGATTCATTATTGTGATGATTGGTTTCCAGGGATTGTGTTGTATACACCTCAGCTGGCATCCGTAAAATTTGAAAGTGTTCTGCCATTTTTGTTCTCAACT

Coding sequence (CDS)

AAGTTTTTGAAATCTCTTGAGATTAATAATGAATCGAATAGCTATGTGAAACTTGAGGGAGACATGTTTAAAAGCTGCCCACTTCTCCAACGTTTGGTTATGCGAGGTCGTTTGTTCGCACGTGTGAAAGTCACTGCTCCGAAACTTGAATATTTGCCAATCACGAGGTTGATTCATTATTGTGATGATTGGTTTCCAGGGATTGTGTTGTATACACCTCAGCTGGCATCCGTAAAATTTGAAAGTGTTCTGCCATTTTTGTTCTCAACT

Protein sequence

KFLKSLEINNESNSYVKLEGDMFKSCPLLQRLVMRGRLFARVKVTAPKLEYLPITRLIHYCDDWFPGIVLYTPQLASVKFESVLPFLFST

Homology

[Close]

BLAST of MC11g1412 vs. NCBI nr
Match: KAA0039262.1 (F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00448.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 3.57e-09
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 1   KFLKSLEINNESNSYV--KLEGDMFKSCPLLQRLVMRGRLFARVKVTAPKLEYLPITRLI 60
           +FLKSLEI N    +   + E  M  + PLL+RL++RG  F  + + APKLEYL +  L 
Sbjct: 176 EFLKSLEIENFYIDFYFDEFEDGMLPAYPLLERLILRGSCFEHLDICAPKLEYLELGIL- 235

Query: 61  HYCDDWFPGIVLY--TPQLASVKFESVLPFLFST 90
             C ++  GI ++  TP L  VK ++++P+L ST
Sbjct: 236 -SCREYRCGIEIFLCTPNLRFVKLDNIVPYLDST 267

[Close]

BLAST of MC11g1412 vs. NCBI nr
Match: XP_016902420.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X2 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.71e-08
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1   KFLKSLEINNESNSYV--KLEGDMFKSCPLLQRLVMRGRLFARVKVTAPKLEYLPITRLI 60
           +FLKSLEI N    +   + E  M    PLL+RL++RG  F  + + APKLEYL +  L 
Sbjct: 184 EFLKSLEIENFYIDFYFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGIL- 243

Query: 61  HYCDDWFPGIVLY--TPQLASVKFESVLPFLFST 90
             C ++  GI ++  +P L  VK ++++P+L ST
Sbjct: 244 -SCREYRCGIEIFLCSPNLRFVKLDNIVPYLDST 275

[Close]

BLAST of MC11g1412 vs. NCBI nr
Match: XP_008459622.1 (PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo])

HSP 1 Score: 61.2 bits (147), Expect = 1.73e-08
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1   KFLKSLEINNESNSYV--KLEGDMFKSCPLLQRLVMRGRLFARVKVTAPKLEYLPITRLI 60
           +FLKSLEI N    +   + E  M    PLL+RL++RG  F  + + APKLEYL +  L 
Sbjct: 184 EFLKSLEIENFYIDFYFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGIL- 243

Query: 61  HYCDDWFPGIVLY--TPQLASVKFESVLPFLFST 90
             C ++  GI ++  +P L  VK ++++P+L ST
Sbjct: 244 -SCREYRCGIEIFLCSPNLRFVKLDNIVPYLDST 275

[Close]

BLAST of MC11g1412 vs. NCBI nr
Match: XP_011656097.2 (F-box/LRR-repeat protein At3g26922 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 2.38e-08
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 1   KFLKSLEINNESNSYV--KLEGDMFKSCPLLQRLVMRGRLFARVKVTAPKLEYLPITRLI 60
           +FLKSLEI N    +   + E  M    PLL+RL++RG  F  + + APKLEYL +  L 
Sbjct: 198 EFLKSLEIENFYTDFFFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGIL- 257

Query: 61  HYCDDWFPGIV--LYTPQLASVKFESVLPFLFST 90
             C ++  GI   L TP L  VK ++++P L ST
Sbjct: 258 -SCREYRCGIEISLCTPNLRFVKLDNIVPCLDST 289

[Close]

BLAST of MC11g1412 vs. NCBI nr
Match: KAE8649007.1 (hypothetical protein Csa_008094 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 2.48e-08
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 1   KFLKSLEINNESNSYV--KLEGDMFKSCPLLQRLVMRGRLFARVKVTAPKLEYLPITRLI 60
           +FLKSLEI N    +   + E  M    PLL+RL++RG  F  + + APKLEYL +  L 
Sbjct: 198 EFLKSLEIENFYTDFFFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGIL- 257

Query: 61  HYCDDWFPGIV--LYTPQLASVKFESVLPFLFST 90
             C ++  GI   L TP L  VK ++++P L ST
Sbjct: 258 -SCREYRCGIEISLCTPNLRFVKLDNIVPCLDST 289

[Close]

BLAST of MC11g1412 vs. ExPASy TrEMBL
Match: A0A5D3BMW8 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00520 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.73e-09
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 1   KFLKSLEINNESNSYV--KLEGDMFKSCPLLQRLVMRGRLFARVKVTAPKLEYLPITRLI 60
           +FLKSLEI N    +   + E  M  + PLL+RL++RG  F  + + APKLEYL +  L 
Sbjct: 176 EFLKSLEIENFYIDFYFDEFEDGMLPAYPLLERLILRGSCFEHLDICAPKLEYLELGIL- 235

Query: 61  HYCDDWFPGIVLY--TPQLASVKFESVLPFLFST 90
             C ++  GI ++  TP L  VK ++++P+L ST
Sbjct: 236 -SCREYRCGIEIFLCTPNLRFVKLDNIVPYLDST 267

[Close]

BLAST of MC11g1412 vs. ExPASy TrEMBL
Match: A0A1S4E367 (F-box/LRR-repeat protein At3g26922-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498692 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.29e-09
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1   KFLKSLEINNESNSYV--KLEGDMFKSCPLLQRLVMRGRLFARVKVTAPKLEYLPITRLI 60
           +FLKSLEI N    +   + E  M    PLL+RL++RG  F  + + APKLEYL +  L 
Sbjct: 184 EFLKSLEIENFYIDFYFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGIL- 243

Query: 61  HYCDDWFPGIVLY--TPQLASVKFESVLPFLFST 90
             C ++  GI ++  +P L  VK ++++P+L ST
Sbjct: 244 -SCREYRCGIEIFLCSPNLRFVKLDNIVPYLDST 275

[Close]

BLAST of MC11g1412 vs. ExPASy TrEMBL
Match: A0A1S3CAL9 (F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498692 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.37e-09
Identity = 37/94 (39.36%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1   KFLKSLEINNESNSYV--KLEGDMFKSCPLLQRLVMRGRLFARVKVTAPKLEYLPITRLI 60
           +FLKSLEI N    +   + E  M    PLL+RL++RG  F  + + APKLEYL +  L 
Sbjct: 184 EFLKSLEIENFYIDFYFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGIL- 243

Query: 61  HYCDDWFPGIVLY--TPQLASVKFESVLPFLFST 90
             C ++  GI ++  +P L  VK ++++P+L ST
Sbjct: 244 -SCREYRCGIEIFLCSPNLRFVKLDNIVPYLDST 275

[Close]

BLAST of MC11g1412 vs. ExPASy TrEMBL
Match: A0A0A0KSU4 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650450 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.20e-08
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 1   KFLKSLEINNESNSYV--KLEGDMFKSCPLLQRLVMRGRLFARVKVTAPKLEYLPITRLI 60
           +FLKSLEI N    +   + E  M    PLL+RL++RG  F  + + APKLEYL +  L 
Sbjct: 198 EFLKSLEIENFYTDFFFDEFEDGMLPDYPLLERLILRGSCFEHLDICAPKLEYLELGIL- 257

Query: 61  HYCDDWFPGIV--LYTPQLASVKFESVLPFLFST 90
             C ++  GI   L TP L  VK ++++P L ST
Sbjct: 258 -SCREYRCGIEISLCTPNLRFVKLDNIVPCLDST 289

The following BLAST results are available for this feature:

BLAST of MC11g1412 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1412 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039262.1	3.57e-09	40.43	F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00448.1 F-box/LRR-repeat...	[more]
XP_016902420.1	1.71e-08	39.36	PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X2 [Cucumis melo]	[more]
XP_008459622.1	1.73e-08	39.36	PREDICTED: F-box/LRR-repeat protein At3g26922-like isoform X1 [Cucumis melo]	[more]
XP_011656097.2	2.38e-08	41.49	F-box/LRR-repeat protein At3g26922 [Cucumis sativus]	[more]
KAE8649007.1	2.48e-08	41.49	hypothetical protein Csa_008094 [Cucumis sativus]	[more]

BLAST of MC11g1412 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BMW8	1.73e-09	40.43	F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S4E367	8.29e-09	39.36	F-box/LRR-repeat protein At3g26922-like isoform X2 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A1S3CAL9	8.37e-09	39.36	F-box/LRR-repeat protein At3g26922-like isoform X1 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0KSU4	1.20e-08	41.49	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G650450 PE=4 ...	[more]

BLAST of MC11g1412 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1412.1	MC11g1412.1	mRNA