MC11g1406 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1406
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	F-box family protein
Location	MC11: 18534810 .. 18535067 (+)
RNA-Seq Expression	MC11g1406
Synteny	MC11g1406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCGAATCAGCCTTCTACCAGATTCTCTTCTCCACCACATTCTCTCCTCCTTAAACACAAAACTCGCTGTCCAGACTTGTGTTCTATCCAAACGGTGGAGGAGTGTTTGGTTTCGTATACCAACACTCAACTTTGATTTTGACTCCTACCCATTTGAAGAGTCAACTAGAAACAATCCCAAATCCAAAGAAAAATCGTTTAAGCGCTTCATCTTCAAAGTTATGTCTGAACATCGCGGATATATTCAAAAATTGAGT

mRNA sequence

GATCGAATCAGCCTTCTACCAGATTCTCTTCTCCACCACATTCTCTCCTCCTTAAACACAAAACTCGCTGTCCAGACTTGTGTTCTATCCAAACGGTGGAGGAGTGTTTGGTTTCGTATACCAACACTCAACTTTGATTTTGACTCCTACCCATTTGAAGAGTCAACTAGAAACAATCCCAAATCCAAAGAAAAATCGTTTAAGCGCTTCATCTTCAAAGTTATGTCTGAACATCGCGGATATATTCAAAAATTGAGT

Coding sequence (CDS)

GATCGAATCAGCCTTCTACCAGATTCTCTTCTCCACCACATTCTCTCCTCCTTAAACACAAAACTCGCTGTCCAGACTTGTGTTCTATCCAAACGGTGGAGGAGTGTTTGGTTTCGTATACCAACACTCAACTTTGATTTTGACTCCTACCCATTTGAAGAGTCAACTAGAAACAATCCCAAATCCAAAGAAAAATCGTTTAAGCGCTTCATCTTCAAAGTTATGTCTGAACATCGCGGATATATTCAAAAATTGAGT

Protein sequence

DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNPKSKEKSFKRFIFKVMSEHRGYIQKLS

Homology

[Close]

BLAST of MC11g1406 vs. ExPASy Swiss-Prot
Match: Q9LXJ6 (F-box/FBD/LRR-repeat protein At3g52680 OS=Arabidopsis thaliana OX=3702 GN=At3g52680 PE=2 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 7.6e-10
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEEST 57
          DRIS LPD LL  ILSSL T + V T VLSK+WRS+W  +P L FD D Y  E  T
Sbjct: 21 DRISELPDGLLLKILSSLPTNIVVATSVLSKQWRSLWKLVPNLEFDSDDYESEHYT 76

[Close]

BLAST of MC11g1406 vs. ExPASy Swiss-Prot
Match: Q6NKX3 (F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana OX=3702 GN=At2g04230 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-09
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP 60
          DRIS LPD+LL  ILSSL T+ A+ T VLSKRWRS+W  +P L FD +  P  +    +P
Sbjct: 13 DRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSNFNPVFDDDNIDP 72

Query: 61 KSKEKSFKRFIFKVMSEHR 80
                F   ++K +S H+
Sbjct: 73 ----TMFSENVYKTLSLHK 87

[Close]

BLAST of MC11g1406 vs. ExPASy Swiss-Prot
Match: Q9FZ52 (F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana OX=3702 GN=At1g16930 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-09
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEE 55
          DRIS LPDSLL  ILS L+TK +V T VLSKRWR++W  +P L+ D +++P ++
Sbjct: 15 DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSNNFPDDD 68

[Close]

BLAST of MC11g1406 vs. ExPASy Swiss-Prot
Match: Q9FJ30 (Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana OX=3702 GN=At5g41840 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.0e-09
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP 60
          DRIS LPD+L+ HILS L TK A  T VL+KRW+ +   +P LNFD DS  F    R N 
Sbjct: 14 DRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFD-DSIYFHPRARRNK 73

Query: 61 KSKE-KSFKRFIFKVMS 77
           SK  +SF  F+  V++
Sbjct: 74 YSKSYESFMSFVDSVLA 89

[Close]

BLAST of MC11g1406 vs. ExPASy Swiss-Prot
Match: Q501G5 (F-box protein At5g03100 OS=Arabidopsis thaliana OX=3702 GN=At5g03100 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.5e-09
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNF-----DFDSYPFEES 60
          D IS LPD +LHHIL++  TKLA++T VLSKRW+ VW+  P+++      D DS     S
Sbjct: 9  DFISSLPDEILHHILANTPTKLAIRTSVLSKRWKHVWYETPSISIVCNRVDPDSLNKTLS 68

Query: 61 TRNNPKSK 64
          + + PK K
Sbjct: 69 SYSTPKIK 76

[Close]

BLAST of MC11g1406 vs. NCBI nr
Match: XP_022141790.1 (F-box/FBD/LRR-repeat protein At1g16930-like [Momordica charantia])

HSP 1 Score: 176 bits (445), Expect = 5.33e-53
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP 60
          DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP
Sbjct: 4  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP 63

Query: 61 KSKEKSFKRFIFKVMSEHRGYIQKLS 86
          KSKEKSFKRFIFKVMSEHRGYIQKLS
Sbjct: 64 KSKEKSFKRFIFKVMSEHRGYIQKLS 89

[Close]

BLAST of MC11g1406 vs. NCBI nr
Match: XP_022141765.1 (LOW QUALITY PROTEIN: putative FBD-associated F-box protein At5g56820, partial [Momordica charantia])

HSP 1 Score: 114 bits (286), Expect = 5.62e-29
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP 60
          DRISLLPDSLLH ILS LNT+  VQTCVLSKRW+++W  IPTLNFDFDSYPF++S RN+ 
Sbjct: 12 DRISLLPDSLLHSILSLLNTRQVVQTCVLSKRWKTLWTDIPTLNFDFDSYPFKQSIRNSS 71

Query: 61 KS--KEKSFKRFIFKVMSEH 78
           S  KE SF+RFI +V+SEH
Sbjct: 72 ASNPKEPSFERFILRVLSEH 91

[Close]

BLAST of MC11g1406 vs. NCBI nr
Match: XP_022141791.1 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like [Momordica charantia])

HSP 1 Score: 114 bits (285), Expect = 9.27e-28
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP 60
           DRISLLPD LL HILS++NTK  VQTCVLSKRW+++W  IPTLNF+F SYPFEE + N  
Sbjct: 118 DRISLLPDCLLCHILSNINTKQVVQTCVLSKRWKTLWTSIPTLNFNFKSYPFEEPSLNAC 177

Query: 61  KSKEKSFKRFIFKVMSEH-RGYIQKLS 86
           +SK+ SFK FIF+++SE  R  IQKLS
Sbjct: 178 RSKQSSFKNFIFRILSERCRTKIQKLS 204

[Close]

BLAST of MC11g1406 vs. NCBI nr
Match: XP_038890214.1 (F-box/LRR-repeat protein At3g26922-like [Benincasa hispida])

HSP 1 Score: 107 bits (267), Expect = 1.62e-25
Identity = 53/80 (66.25%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEEST--RN 60
          DRISLLPD LLHHILS+LNTK  VQTCVLSKRW+++W  IPTLNFD++SY    S+   N
Sbjct: 5  DRISLLPDVLLHHILSTLNTKCVVQTCVLSKRWKTLWTHIPTLNFDYNSYSSSLSSFKDN 64

Query: 61 NPKSKEKSFKRFIFKVMSEH 78
          + ++KEKSFK FIF+V+S+H
Sbjct: 65 DDEAKEKSFKYFIFRVLSKH 84

[Close]

BLAST of MC11g1406 vs. NCBI nr
Match: KAA0039267.1 (F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 102 bits (255), Expect = 5.82e-24
Identity = 53/88 (60.23%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1   DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTR-NN 60
           DRISLLPD+LLHHILSS NTK  VQTC+LSKRW+++W  IPTLNFD++S+    S   ++
Sbjct: 17  DRISLLPDTLLHHILSSFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYDD 76

Query: 61  PKSKEKSFKRFIFKVMSEHRGY-IQKLS 86
            +SK +SFK FIF+V+S+H    IQKL+
Sbjct: 77  EESKRRSFKFFIFRVLSKHCATDIQKLT 104

[Close]

BLAST of MC11g1406 vs. ExPASy TrEMBL
Match: A0A6J1CJ42 (F-box/FBD/LRR-repeat protein At1g16930-like OS=Momordica charantia OX=3673 GN=LOC111012076 PE=4 SV=1)

HSP 1 Score: 176 bits (445), Expect = 2.58e-53
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP 60
          DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP
Sbjct: 4  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP 63

Query: 61 KSKEKSFKRFIFKVMSEHRGYIQKLS 86
          KSKEKSFKRFIFKVMSEHRGYIQKLS
Sbjct: 64 KSKEKSFKRFIFKVMSEHRGYIQKLS 89

[Close]

BLAST of MC11g1406 vs. ExPASy TrEMBL
Match: A0A6J1CJ18 (LOW QUALITY PROTEIN: putative FBD-associated F-box protein At5g56820 OS=Momordica charantia OX=3673 GN=LOC111012046 PE=4 SV=1)

HSP 1 Score: 114 bits (286), Expect = 2.72e-29
Identity = 57/80 (71.25%), Postives = 67/80 (83.75%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP 60
          DRISLLPDSLLH ILS LNT+  VQTCVLSKRW+++W  IPTLNFDFDSYPF++S RN+ 
Sbjct: 12 DRISLLPDSLLHSILSLLNTRQVVQTCVLSKRWKTLWTDIPTLNFDFDSYPFKQSIRNSS 71

Query: 61 KS--KEKSFKRFIFKVMSEH 78
           S  KE SF+RFI +V+SEH
Sbjct: 72 ASNPKEPSFERFILRVLSEH 91

[Close]

BLAST of MC11g1406 vs. ExPASy TrEMBL
Match: A0A6J1CKA9 (LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica charantia OX=3673 GN=LOC111012077 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 4.49e-28
Identity = 58/87 (66.67%), Postives = 70/87 (80.46%), Query Frame = 0


Query: 1   DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP 60
           DRISLLPD LL HILS++NTK  VQTCVLSKRW+++W  IPTLNF+F SYPFEE + N  
Sbjct: 118 DRISLLPDCLLCHILSNINTKQVVQTCVLSKRWKTLWTSIPTLNFNFKSYPFEEPSLNAC 177

Query: 61  KSKEKSFKRFIFKVMSEH-RGYIQKLS 86
           +SK+ SFK FIF+++SE  R  IQKLS
Sbjct: 178 RSKQSSFKNFIFRILSERCRTKIQKLS 204

[Close]

BLAST of MC11g1406 vs. ExPASy TrEMBL
Match: A0A5A7TCF1 (F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00570 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 2.82e-24
Identity = 53/88 (60.23%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1   DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTR-NN 60
           DRISLLPD+LLHHILSS NTK  VQTC+LSKRW+++W  IPTLNFD++S+    S   ++
Sbjct: 17  DRISLLPDTLLHHILSSFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYDD 76

Query: 61  PKSKEKSFKRFIFKVMSEHRGY-IQKLS 86
            +SK +SFK FIF+V+S+H    IQKL+
Sbjct: 77  EESKRRSFKFFIFRVLSKHCATDIQKLT 104

[Close]

BLAST of MC11g1406 vs. ExPASy TrEMBL
Match: A0A1S3CBU6 (F-box/LRR-repeat protein At3g26922-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498689 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 3.03e-24
Identity = 53/88 (60.23%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1   DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTR-NN 60
           DRISLLPDSLLHHILS+ NTK  VQTC+LSKRW+++W  IPTLNFD++S+    S   ++
Sbjct: 17  DRISLLPDSLLHHILSTFNTKFVVQTCLLSKRWKTLWTLIPTLNFDYNSFSSSSSFNYDD 76

Query: 61  PKSKEKSFKRFIFKVMSEHRGY-IQKLS 86
            +SK +SFK FIF+V+S+H    IQKL+
Sbjct: 77  EESKRRSFKFFIFRVLSKHCATDIQKLT 104

[Close]

BLAST of MC11g1406 vs. TAIR 10
Match: AT3G52680.1 (F-box/RNI-like/FBD-like domains-containing protein )

HSP 1 Score: 64.3 bits (155), Expect = 5.4e-11
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEEST 57
          DRIS LPD LL  ILSSL T + V T VLSK+WRS+W  +P L FD D Y  E  T
Sbjct: 21 DRISELPDGLLLKILSSLPTNIVVATSVLSKQWRSLWKLVPNLEFDSDDYESEHYT 76

[Close]

BLAST of MC11g1406 vs. TAIR 10
Match: AT3G52680.2 (F-box/RNI-like/FBD-like domains-containing protein )

HSP 1 Score: 64.3 bits (155), Expect = 5.4e-11
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEEST 57
          DRIS LPD LL  ILSSL T + V T VLSK+WRS+W  +P L FD D Y  E  T
Sbjct: 21 DRISELPDGLLLKILSSLPTNIVVATSVLSKQWRSLWKLVPNLEFDSDDYESEHYT 76

[Close]

BLAST of MC11g1406 vs. TAIR 10
Match: AT1G16930.1 (F-box/RNI-like/FBD-like domains-containing protein )

HSP 1 Score: 63.9 bits (154), Expect = 7.1e-11
Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEE 55
          DRIS LPDSLL  ILS L+TK +V T VLSKRWR++W  +P L+ D +++P ++
Sbjct: 15 DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSNNFPDDD 68

[Close]

BLAST of MC11g1406 vs. TAIR 10
Match: AT2G04230.1 (FBD, F-box and Leucine Rich Repeat domains containing protein )

HSP 1 Score: 63.9 bits (154), Expect = 7.1e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP 60
          DRIS LPD+LL  ILSSL T+ A+ T VLSKRWRS+W  +P L FD +  P  +    +P
Sbjct: 13 DRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSNFNPVFDDDNIDP 72

Query: 61 KSKEKSFKRFIFKVMSEHR 80
                F   ++K +S H+
Sbjct: 73 ----TMFSENVYKTLSLHK 87

[Close]

BLAST of MC11g1406 vs. TAIR 10
Match: AT5G41840.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 3.5e-10
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 1  DRISLLPDSLLHHILSSLNTKLAVQTCVLSKRWRSVWFRIPTLNFDFDSYPFEESTRNNP 60
          DRIS LPD+L+ HILS L TK A  T VL+KRW+ +   +P LNFD DS  F    R N 
Sbjct: 14 DRISGLPDALICHILSFLPTKEAASTTVLAKRWKPLLAFVPNLNFD-DSIYFHPRARRNK 73

Query: 61 KSKE-KSFKRFIFKVMS 77
           SK  +SF  F+  V++
Sbjct: 74 YSKSYESFMSFVDSVLA 89

The following BLAST results are available for this feature:

BLAST of MC11g1406 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXJ6	7.6e-10	58.93	F-box/FBD/LRR-repeat protein At3g52680 OS=Arabidopsis thaliana OX=3702 GN=At3g52...	[more]
Q6NKX3	1.0e-09	45.57	F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana OX=3702 GN=At2g04...	[more]
Q9FZ52	1.0e-09	55.56	F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana OX=3702 GN=At1g16...	[more]
Q9FJ30	5.0e-09	49.35	Putative F-box/LRR-repeat protein At5g41840 OS=Arabidopsis thaliana OX=3702 GN=A...	[more]
Q501G5	8.5e-09	47.06	F-box protein At5g03100 OS=Arabidopsis thaliana OX=3702 GN=At5g03100 PE=2 SV=1	[more]

BLAST of MC11g1406 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141790.1	5.33e-53	100.00	F-box/FBD/LRR-repeat protein At1g16930-like [Momordica charantia]	[more]
XP_022141765.1	5.62e-29	71.25	LOW QUALITY PROTEIN: putative FBD-associated F-box protein At5g56820, partial [M...	[more]
XP_022141791.1	9.27e-28	66.67	LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like [Momordica char...	[more]
XP_038890214.1	1.62e-25	66.25	F-box/LRR-repeat protein At3g26922-like [Benincasa hispida]	[more]
KAA0039267.1	5.82e-24	60.23	F-box/LRR-repeat protein [Cucumis melo var. makuwa] >TYK00453.1 F-box/LRR-repeat...	[more]

BLAST of MC11g1406 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CJ42	2.58e-53	100.00	F-box/FBD/LRR-repeat protein At1g16930-like OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A6J1CJ18	2.72e-29	71.25	LOW QUALITY PROTEIN: putative FBD-associated F-box protein At5g56820 OS=Momordic...	[more]
A0A6J1CKA9	4.49e-28	66.67	LOW QUALITY PROTEIN: F-box/FBD/LRR-repeat protein At5g18770-like OS=Momordica ch...	[more]
A0A5A7TCF1	2.82e-24	60.23	F-box/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CBU6	3.03e-24	60.23	F-box/LRR-repeat protein At3g26922-like isoform X2 OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of MC11g1406 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52680.1	5.4e-11	58.93	F-box/RNI-like/FBD-like domains-containing protein	[more]
AT3G52680.2	5.4e-11	58.93	F-box/RNI-like/FBD-like domains-containing protein	[more]
AT1G16930.1	7.1e-11	55.56	F-box/RNI-like/FBD-like domains-containing protein	[more]
AT2G04230.1	7.1e-11	45.57	FBD, F-box and Leucine Rich Repeat domains containing protein	[more]
AT5G41840.1	3.5e-10	49.35	F-box/RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 6..46 e-value: 0.0069 score: 25.6
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 2..40 e-value: 1.3E-5 score: 24.9
None	No IPR available	GENE3D	1.20.1280.50		coord: 1..43 e-value: 8.5E-6 score: 27.6
None	No IPR available	PANTHER	PTHR32212	CYCLIN-LIKE F-BOX	coord: 1..73
None	No IPR available	PANTHER	PTHR32212:SF365	F-BOX/RNI-LIKE SUPERFAMILY PROTEIN	coord: 1..73
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1406.1	MC11g1406.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding