MC11g1403 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1403
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	30S ribosomal protein S11, chloroplastic
Location	MC11: 18517440 .. 18517652 (+)
RNA-Seq Expression	MC11g1403
Synteny	MC11g1403

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACTATTTGCCGATCAAACCGCAGCAGGAAATGCTATTCGGGTAGTAGTGGATCAGGGTATGCAACTAGCGGAAGTCATGATAAAGGGCCCAGGTCTCGGAAGAGATGCAACATTAAGAGCTATTCGTAGAAGCGATATACTCTTAAGTTTCATACTGGATGTAACCCCTATGCCACATAATGGCTATAGGCCCCCTAAAAAACGACGTGTG

mRNA sequence

ACACTATTTGCCGATCAAACCGCAGCAGGAAATGCTATTCGGGTAGTAGTGGATCAGGGTATGCAACTAGCGGAAGTCATGATAAAGGGCCCAGGTCTCGGAAGAGATGCAACATTAAGAGCTATTCGTAGAAGCGATATACTCTTAAGTTTCATACTGGATGTAACCCCTATGCCACATAATGGCTATAGGCCCCCTAAAAAACGACGTGTG

Coding sequence (CDS)

ACACTATTTGCCGATCAAACCGCAGCAGGAAATGCTATTCGGGTAGTAGTGGATCAGGGTATGCAACTAGCGGAAGTCATGATAAAGGGCCCAGGTCTCGGAAGAGATGCAACATTAAGAGCTATTCGTAGAAGCGATATACTCTTAAGTTTCATACTGGATGTAACCCCTATGCCACATAATGGCTATAGGCCCCCTAAAAAACGACGTGTG

Protein sequence

TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPHNGYRPPKKRRV

Homology

[Close]

BLAST of MC11g1403 vs. ExPASy Swiss-Prot
Match: Q09WY4 (30S ribosomal protein S11, chloroplastic OS=Morus indica OX=248361 GN=rps11 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.7e-28
Identity = 63/71 (88.73%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIR VVDQGMQ AEVMIKGPGLGRDA LRAIRRS ILLSFI DVTPMPH
Sbjct: 68  TPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPH 127

Query: 61  NGYRPPKKRRV 72
           NG RPPKKRRV
Sbjct: 128 NGCRPPKKRRV 138

[Close]

BLAST of MC11g1403 vs. ExPASy Swiss-Prot
Match: B1A968 (30S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.8e-28
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIR VVDQGMQ AEVMIKGPGLGRDA LRAIRRS ILLSF+ DVTPMPH
Sbjct: 68  TPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPH 127

Query: 61  NGYRPPKKRRV 72
           NG RPPKKRRV
Sbjct: 128 NGCRPPKKRRV 138

[Close]

BLAST of MC11g1403 vs. ExPASy Swiss-Prot
Match: Q06GW4 (30S ribosomal protein S11, chloroplastic OS=Drimys granadensis OX=224735 GN=rps11 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.8e-28
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIR VVDQGMQ AEVMIKGPGLGRDA LRAIRRS ILLSF+ DVTPMPH
Sbjct: 60  TPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPH 119

Query: 61  NGYRPPKKRRV 72
           NG RPPKKRRV
Sbjct: 120 NGCRPPKKRRV 130

[Close]

BLAST of MC11g1403 vs. ExPASy Swiss-Prot
Match: Q49KW5 (30S ribosomal protein S11, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps11 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.8e-28
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIR VVDQGMQ AEVMIKGPGLGRDA LRAIRRS ILLSF+ DVTPMPH
Sbjct: 68  TPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPH 127

Query: 61  NGYRPPKKRRV 72
           NG RPPKKRRV
Sbjct: 128 NGCRPPKKRRV 138

[Close]

BLAST of MC11g1403 vs. ExPASy Swiss-Prot
Match: A0ZZ68 (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps11 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 8.8e-28
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIR VVDQGMQ AEVMIKGPGLGRDA LRAIRRS ILLSF+ DVTPMPH
Sbjct: 68  TPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPH 127

Query: 61  NGYRPPKKRRV 72
           NG RPPKKRRV
Sbjct: 128 NGCRPPKKRRV 138

[Close]

BLAST of MC11g1403 vs. NCBI nr
Match: YP_009346516.1 (ribosomal protein S11 [Cucumis x hytivus] >AOW71127.1 ribosomal protein S11 [Cucumis x hytivus] >QCY72875.1 ribosomal protein S11 [Cucumis hystrix])

HSP 1 Score: 124 bits (312), Expect = 1.05e-34
Identity = 64/71 (90.14%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIRVVVDQGMQ AEVMIKGPGLGRDA LRAIRRS ILLSFI DVTPMPH
Sbjct: 68  TPFAAQTAAGNAIRVVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPH 127

Query: 61  NGYRPPKKRRV 71
           NG RPPKKRRV
Sbjct: 128 NGCRPPKKRRV 138

[Close]

BLAST of MC11g1403 vs. NCBI nr
Match: YP_010038746.1 (chloroplast 30S ribosomal protein S11 [Sonchus arvensis] >QOY44795.1 chloroplast 30S ribosomal protein S11 [Sonchus arvensis] >QZP42193.1 ribosomal protein S11 [Sonchus brachyotus] >QZP42280.1 ribosomal protein S11 [Sonchus brachyotus])

HSP 1 Score: 124 bits (311), Expect = 1.40e-34
Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIR VVDQGMQ AEVMIKGPGLGRDA LRAIRRSDILL+F+ DVTPMPH
Sbjct: 66  TPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSDILLTFVRDVTPMPH 125

Query: 61  NGYRPPKKRRV 71
           NG RPPKKRRV
Sbjct: 126 NGCRPPKKRRV 136

[Close]

BLAST of MC11g1403 vs. NCBI nr
Match: YP_009646961.1 (30S ribosomal protein S11 [Cephalotus follicularis] >QCX32039.1 30S ribosomal protein S11 [Cephalotus follicularis])

HSP 1 Score: 124 bits (311), Expect = 1.49e-34
Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIR VVDQGMQ AEVMIKGPGLGRDA LRAIRRSDILL+F+ DVTPMPH
Sbjct: 68  TPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSDILLNFVRDVTPMPH 127

Query: 61  NGYRPPKKRRV 71
           NG RPPKKRRV
Sbjct: 128 NGCRPPKKRRV 138

[Close]

BLAST of MC11g1403 vs. NCBI nr
Match: QTA71780.1 (ribosomal protein S11 [Coriaria nepalensis])

HSP 1 Score: 124 bits (311), Expect = 1.49e-34
Identity = 63/71 (88.73%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIR+VVDQGMQ AEVMIKGPGLGRDA LRAIRRS ILLSFI DVTPMPH
Sbjct: 68  TPFAAQTAAGNAIRIVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPH 127

Query: 61  NGYRPPKKRRV 71
           NG RPPKKRRV
Sbjct: 128 NGCRPPKKRRV 138

[Close]

BLAST of MC11g1403 vs. NCBI nr
Match: AMQ10368.1 (ribosomal protein S11 [Sonchus maritimus])

HSP 1 Score: 124 bits (311), Expect = 1.49e-34
Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIR VVDQGMQ AEVMIKGPGLGRDA LRAIRRSDILL+F+ DVTPMPH
Sbjct: 68  TPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSDILLTFVRDVTPMPH 127

Query: 61  NGYRPPKKRRV 71
           NG RPPKKRRV
Sbjct: 128 NGCRPPKKRRV 138

[Close]

BLAST of MC11g1403 vs. ExPASy TrEMBL
Match: A0A1P8C7T4 (30S ribosomal protein S11, chloroplastic OS=Cucumis x hytivus OX=442738 GN=rps11 PE=3 SV=1)

HSP 1 Score: 124 bits (312), Expect = 5.08e-35
Identity = 64/71 (90.14%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIRVVVDQGMQ AEVMIKGPGLGRDA LRAIRRS ILLSFI DVTPMPH
Sbjct: 68  TPFAAQTAAGNAIRVVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPH 127

Query: 61  NGYRPPKKRRV 71
           NG RPPKKRRV
Sbjct: 128 NGCRPPKKRRV 138

[Close]

BLAST of MC11g1403 vs. ExPASy TrEMBL
Match: A0A4Y5RD43 (30S ribosomal protein S11, chloroplastic OS=Cucumis hystrix OX=396994 GN=rps11 PE=3 SV=1)

HSP 1 Score: 124 bits (312), Expect = 5.08e-35
Identity = 64/71 (90.14%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIRVVVDQGMQ AEVMIKGPGLGRDA LRAIRRS ILLSFI DVTPMPH
Sbjct: 68  TPFAAQTAAGNAIRVVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIRDVTPMPH 127

Query: 61  NGYRPPKKRRV 71
           NG RPPKKRRV
Sbjct: 128 NGCRPPKKRRV 138

[Close]

BLAST of MC11g1403 vs. ExPASy TrEMBL
Match: A0A1U8YIE9 (30S ribosomal protein S11, chloroplastic OS=Sonchus maritimus OX=50206 GN=rps11 PE=3 SV=1)

HSP 1 Score: 124 bits (311), Expect = 7.21e-35
Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIR VVDQGMQ AEVMIKGPGLGRDA LRAIRRSDILL+F+ DVTPMPH
Sbjct: 68  TPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSDILLTFVRDVTPMPH 127

Query: 61  NGYRPPKKRRV 71
           NG RPPKKRRV
Sbjct: 128 NGCRPPKKRRV 138

[Close]

BLAST of MC11g1403 vs. ExPASy TrEMBL
Match: A0A4Y5QKC2 (30S ribosomal protein S11 OS=Cephalotus follicularis OX=3775 GN=rps11 PE=3 SV=1)

HSP 1 Score: 124 bits (311), Expect = 7.21e-35
Identity = 62/71 (87.32%), Postives = 64/71 (90.14%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIR VVDQGMQ AEVMIKGPGLGRDA LRAIRRSDILL+F+ DVTPMPH
Sbjct: 68  TPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSDILLNFVRDVTPMPH 127

Query: 61  NGYRPPKKRRV 71
           NG RPPKKRRV
Sbjct: 128 NGCRPPKKRRV 138

[Close]

BLAST of MC11g1403 vs. ExPASy TrEMBL
Match: A0A5D2IB07 (Uncharacterized protein (Fragment) OS=Gossypium tomentosum OX=34277 GN=ES332_D12G156100v1 PE=3 SV=1)

HSP 1 Score: 122 bits (307), Expect = 1.04e-34
Identity = 62/71 (87.32%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIR VVDQGMQ AEVMIKGPGLGRDA LRAIRRS ILLSF+ DVTPMPH
Sbjct: 33  TPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPH 92

Query: 61  NGYRPPKKRRV 71
           NG RPPKKRRV
Sbjct: 93  NGCRPPKKRRV 103

[Close]

BLAST of MC11g1403 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 121.3 bits (303), Expect = 3.1e-28
Identity = 61/71 (85.92%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1   TLFADQTAAGNAIRVVVDQGMQLAEVMIKGPGLGRDATLRAIRRSDILLSFILDVTPMPH 60
           T FA QTAAGNAIR VVDQGMQ AEV IKGPGLGRDA LRAIRRS ILLSF+ DVTPMPH
Sbjct: 68  TPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVRDVTPMPH 127

Query: 61  NGYRPPKKRRV 72
           NG RPPKKRRV
Sbjct: 128 NGCRPPKKRRV 138

The following BLAST results are available for this feature:

BLAST of MC11g1403 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09WY4	6.7e-28	88.73	30S ribosomal protein S11, chloroplastic OS=Morus indica OX=248361 GN=rps11 PE=3...	[more]
B1A968	8.8e-28	87.32	30S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 ...	[more]
Q06GW4	8.8e-28	87.32	30S ribosomal protein S11, chloroplastic OS=Drimys granadensis OX=224735 GN=rps1...	[more]
Q49KW5	8.8e-28	87.32	30S ribosomal protein S11, chloroplastic OS=Eucalyptus globulus subsp. globulus ...	[more]
A0ZZ68	8.8e-28	87.32	30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1...	[more]

BLAST of MC11g1403 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009346516.1	1.05e-34	90.14	ribosomal protein S11 [Cucumis x hytivus] >AOW71127.1 ribosomal protein S11 [Cuc...	[more]
YP_010038746.1	1.40e-34	87.32	chloroplast 30S ribosomal protein S11 [Sonchus arvensis] >QOY44795.1 chloroplast...	[more]
YP_009646961.1	1.49e-34	87.32	30S ribosomal protein S11 [Cephalotus follicularis] >QCX32039.1 30S ribosomal pr...	[more]
QTA71780.1	1.49e-34	88.73	ribosomal protein S11 [Coriaria nepalensis]	[more]
AMQ10368.1	1.49e-34	87.32	ribosomal protein S11 [Sonchus maritimus]	[more]

BLAST of MC11g1403 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1P8C7T4	5.08e-35	90.14	30S ribosomal protein S11, chloroplastic OS=Cucumis x hytivus OX=442738 GN=rps11...	[more]
A0A4Y5RD43	5.08e-35	90.14	30S ribosomal protein S11, chloroplastic OS=Cucumis hystrix OX=396994 GN=rps11 P...	[more]
A0A1U8YIE9	7.21e-35	87.32	30S ribosomal protein S11, chloroplastic OS=Sonchus maritimus OX=50206 GN=rps11 ...	[more]
A0A4Y5QKC2	7.21e-35	87.32	30S ribosomal protein S11 OS=Cephalotus follicularis OX=3775 GN=rps11 PE=3 SV=1	[more]
A0A5D2IB07	1.04e-34	87.32	Uncharacterized protein (Fragment) OS=Gossypium tomentosum OX=34277 GN=ES332_D12...	[more]

BLAST of MC11g1403 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00750.1	3.1e-28	85.92	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 1..71 e-value: 3.5E-17 score: 64.7
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 3..70 e-value: 2.2E-24 score: 85.9
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 1..70
None	No IPR available	PANTHER	PTHR11759:SF49	30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC	coord: 1..70
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1403.1	MC11g1403.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome