MC11g1354 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1354
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	MC11: 17192380 .. 17192577 (+)
RNA-Seq Expression	MC11g1354
Synteny	MC11g1354

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATGGTCAAATTCGGTGGCGAGTATCCTTTGGAGAATATGGCACGAGAGGAATCAATGGGTTTTTCATGACAAAGAGACGAACGTGCATGCTTTTTGGGATCTTGTCAAAACTTTCGCCTCTTCGTGGACCTCGTTATCTAAATTTTTTTGTAACTATGGTGTGACACAAATCTTTGCCAATTGGGAGGTTTTTCTG

mRNA sequence

TTATGGTCAAATTCGGTGGCGAGTATCCTTTGGAGAATATGGCACGAGAGGAATCAATGGGTTTTTCATGACAAAGAGACGAACGTGCATGCTTTTTGGGATCTTGTCAAAACTTTCGCCTCTTCGTGGACCTCGTTATCTAAATTTTTTTGTAACTATGGTGTGACACAAATCTTTGCCAATTGGGAGGTTTTTCTG

Coding sequence (CDS)

TTATGGTCAAATTCGGTGGCGAGTATCCTTTGGAGAATATGGCACGAGAGGAATCAATGGGTTTTTCATGACAAAGAGACGAACGTGCATGCTTTTTGGGATCTTGTCAAAACTTTCGCCTCTTCGTGGACCTCGTTATCTAAATTTTTTTGTAACTATGGTGTGACACAAATCTTTGCCAATTGGGAGGTTTTTCTG

Protein sequence

LWSNSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWEVFL

Homology

[Close]

BLAST of MC11g1354 vs. NCBI nr
Match: XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])

HSP 1 Score: 56.2 bits (134), Expect = 1.28e-07
Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 0


Query: 1   LWSNSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFA 60
           LW   V +ILW +W E N+ VF   E      W +++   S W S+SK FCNY +  I  
Sbjct: 107 LWRACVCAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWDSISKTFCNYPLDMILY 166

Query: 61  NWEVFL 66
           +W  F+
Sbjct: 167 SWATFV 172

[Close]

BLAST of MC11g1354 vs. NCBI nr
Match: TYK14764.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.47e-07
Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 0


Query: 4   NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWE 63
           N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N  
Sbjct: 185 NTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLN 244

Query: 64  VF 65
            F
Sbjct: 245 AF 246

[Close]

BLAST of MC11g1354 vs. NCBI nr
Match: TYK13741.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.47e-07
Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 0


Query: 4   NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWE 63
           N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N  
Sbjct: 185 NTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLN 244

Query: 64  VF 65
            F
Sbjct: 245 AF 246

[Close]

BLAST of MC11g1354 vs. NCBI nr
Match: TYK19563.1 (uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.60e-07
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 1   LWSNSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQI 58
           LW   V +I+W IW ERN  VF  K+ ++     LV+   S WTS+SK FCNY +  I
Sbjct: 330 LWLAEVCAIMWDIWGERNDRVFRGKDRDLSEIGSLVRFHVSLWTSVSKLFCNYSLGNI 387

[Close]

BLAST of MC11g1354 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 2.17e-07
Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 0


Query: 4   NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWE 63
           N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N  
Sbjct: 482 NTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLN 541

Query: 64  VF 65
            F
Sbjct: 542 AF 543

[Close]

BLAST of MC11g1354 vs. ExPASy TrEMBL
Match: A0A1S4DXB1 (uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.18e-08
Identity = 25/66 (37.88%), Postives = 35/66 (53.03%), Query Frame = 0


Query: 1   LWSNSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFA 60
           LW   V +ILW +W E N+ VF   E      W +++   S W S+SK FCNY +  I  
Sbjct: 107 LWRACVCAILWVLWDETNRRVFWGVERGTGEIWLVIRYHVSLWDSISKTFCNYPLDMILY 166

Query: 61  NWEVFL 66
           +W  F+
Sbjct: 167 SWATFV 172

[Close]

BLAST of MC11g1354 vs. ExPASy TrEMBL
Match: A0A5D3CUY9 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46132G00010 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.12e-08
Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 0


Query: 4   NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWE 63
           N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N  
Sbjct: 185 NTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLN 244

Query: 64  VF 65
            F
Sbjct: 245 AF 246

[Close]

BLAST of MC11g1354 vs. ExPASy TrEMBL
Match: A0A5D3CPL6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold34842G00010 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 7.12e-08
Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 0


Query: 4   NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWE 63
           N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N  
Sbjct: 185 NTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLN 244

Query: 64  VF 65
            F
Sbjct: 245 AF 246

[Close]

BLAST of MC11g1354 vs. ExPASy TrEMBL
Match: A0A5D3D7T2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00660 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.72e-08
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 1   LWSNSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQI 58
           LW   V +I+W IW ERN  VF  K+ ++     LV+   S WTS+SK FCNY +  I
Sbjct: 330 LWLAEVCAIMWDIWGERNDRVFRGKDRDLSEIGSLVRFHVSLWTSVSKLFCNYSLGNI 387

[Close]

BLAST of MC11g1354 vs. ExPASy TrEMBL
Match: A0A5A7TES3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00040 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.05e-07
Identity = 27/62 (43.55%), Postives = 33/62 (53.23%), Query Frame = 0


Query: 4   NSVASILWRIWHERNQWVFHDKETNVHAFWDLVKTFASSWTSLSKFFCNYGVTQIFANWE 63
           N+ AS LW IW ERN  +F+ KE  V   W+ +K  A  WTS S  F NY  + I  N  
Sbjct: 482 NTYASALWNIWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLN 541

Query: 64  VF 65
            F
Sbjct: 542 AF 543

The following BLAST results are available for this feature:

BLAST of MC11g1354 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1354 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900613.1	1.28e-07	37.88	PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo]	[more]
TYK14764.1	1.47e-07	43.55	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK13741.1	1.47e-07	43.55	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK19563.1	1.60e-07	44.83	uncharacterized protein E5676_scaffold416G00660 [Cucumis melo var. makuwa]	[more]
KAA0040037.1	2.17e-07	43.55	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of MC11g1354 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DXB1	6.18e-08	37.88	uncharacterized protein LOC107990976 OS=Cucumis melo OX=3656 GN=LOC107990976 PE=...	[more]
A0A5D3CUY9	7.12e-08	43.55	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3CPL6	7.12e-08	43.55	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3D7T2	7.72e-08	44.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TES3	1.05e-07	43.55	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MC11g1354 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1354.1	MC11g1354.1	mRNA