MC11g1349 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1349
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC11: 16919991 .. 16920298 (-)
RNA-Seq Expression	MC11g1349
Synteny	MC11g1349

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTAGCGGTTGTCGTATTGATGGTTCCTTTTTCTACATTTGGTTTGATAATGACATGTTTATGTTAGAGGATGTGTCAAGGAAAACTTTGATGTCTTTGCATTCCTCGCAATTCTTGTGGTTCGAAAATCATATGGGTGAAGCCACAAGGCATCAGATTCATGCTTCCTTATTCTTTCAGCTTCGAGACGATATTGGGCAATGGCGTATTAAAAATTCAGAGCTAATGGTATGTGGTTTCTAGAGTGGGTGTTATGGCCTTCTACAGGAGGTCGTAAGAGTGTTCTTGTCCCTGTCGGGATG

mRNA sequence

ATGGAAATTAGCGGTTGTCGTATTGATGGTTCCTTTTTCTACATTTGGTTTGATAATGACATGTTTATGTTAGAGGATGTGTCAAGGAAAACTTTGATGTCTTTGCATTCCTCGCAATTCTTGTGGTTCGAAAATCATATGGGTGAAGCCACAAGGCATCAGATTCATGCTTCCTTATTCTTTCAGCTTCGAGACGATATTGGGCAATGGCGTATTAAATTCAGAGCTAATGGTATGTGGTTTCTAGAGTGGGTGTTATGGCCTTCTACAGGAGGTCGTAAGAGTGTTCTTGTCCCTGTCGGGATG

Coding sequence (CDS)

ATGGAAATTAGCGGTTGTCGTATTGATGGTTCCTTTTTCTACATTTGGTTTGATAATGACATGTTTATGTTAGAGGATGTGTCAAGGAAAACTTTGATGTCTTTGCATTCCTCGCAATTCTTGTGGTTCGAAAATCATATGGGTGAAGCCACAAGGCATCAGATTCATGCTTCCTTATTCTTTCAGCTTCGAGACGATATTGGGCAATGGCGTATTAAATTCAGAGCTAATGGTATGTGGTTTCTAGAGTGGGTGTTATGGCCTTCTACAGGAGGTCGTAAGAGTGTTCTTGTCCCTGTCGGGATG

Protein sequence

MEISGCRIDGSFFYIWFDNDMFMLEDVSRKTLMSLHSSQFLWFENHMGEATRHQIHASLFFQLRDDIGQWRIKFRANGMWFLEWVLWPSTGGRKSVLVPVGM

Homology

[Close]

BLAST of MC11g1349 vs. NCBI nr
Match: TYJ98834.1 (putative 3,4-dihydroxy-2-butanone kinase isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 9.06e-05
Identity = 34/99 (34.34%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 1   MEISGCRIDGSFFYIWFDNDMFMLEDVSRKTLMSLHSSQFLWFENHMGEATRHQIHASLF 60
           MEI GC+ID S + IW + D   +EDV     +S   SQ  W ++ +    R  +  +  
Sbjct: 217 MEIVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNN-- 276

Query: 61  FQLRDDI--GQWRI-KFRANGMWFLEWVLWPSTGGRKSV 96
           F+   DI  G+ RI KF+A   W L    WP +GG  ++
Sbjct: 277 FKKFGDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNI 313

[Close]

BLAST of MC11g1349 vs. NCBI nr
Match: KAA0036035.1 (putative 3,4-dihydroxy-2-butanone kinase isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 51.2 bits (121), Expect = 9.38e-05
Identity = 34/99 (34.34%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 1   MEISGCRIDGSFFYIWFDNDMFMLEDVSRKTLMSLHSSQFLWFENHMGEATRHQIHASLF 60
           MEI GC+ID S + IW + D   +EDV     +S   SQ  W ++ +    R  +  +  
Sbjct: 43  MEIVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNN-- 102

Query: 61  FQLRDDI--GQWRI-KFRANGMWFLEWVLWPSTGGRKSV 96
           F+   DI  G+ RI KF+A   W L    WP +GG  ++
Sbjct: 103 FKKFGDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNI 139

[Close]

BLAST of MC11g1349 vs. NCBI nr
Match: TYJ98411.1 (nucleotide binding protein [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 6.03e-04
Identity = 26/77 (33.77%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 2   EISGCRIDGSFFYIWFDNDMFMLEDVSRKTLMSLHSSQFLWFENHMGEATRHQIHASLFF 61
           ++  C++    + IWFD D F +EDV  + ++SL  +QF WF   + E  R   +  L  
Sbjct: 261 KVERCKVVNVPYCIWFDKDYFHIEDVEARKILSLSDTQFRWFLKEISEFLRGPENGFLLR 320

Query: 62  QLRDDIGQWRI-KFRAN 77
              DD G  R+ KFR  
Sbjct: 321 NGFDDFGSTRLLKFRLE 337

[Close]

BLAST of MC11g1349 vs. ExPASy TrEMBL
Match: A0A5D3BIE8 (Putative 3,4-dihydroxy-2-butanone kinase isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00250 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.39e-05
Identity = 34/99 (34.34%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 1   MEISGCRIDGSFFYIWFDNDMFMLEDVSRKTLMSLHSSQFLWFENHMGEATRHQIHASLF 60
           MEI GC+ID S + IW + D   +EDV     +S   SQ  W ++ +    R  +  +  
Sbjct: 217 MEIVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNN-- 276

Query: 61  FQLRDDI--GQWRI-KFRANGMWFLEWVLWPSTGGRKSV 96
           F+   DI  G+ RI KF+A   W L    WP +GG  ++
Sbjct: 277 FKKFGDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNI 313

[Close]

BLAST of MC11g1349 vs. ExPASy TrEMBL
Match: A0A5A7T3H6 (Putative 3,4-dihydroxy-2-butanone kinase isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00260 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.54e-05
Identity = 34/99 (34.34%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 1   MEISGCRIDGSFFYIWFDNDMFMLEDVSRKTLMSLHSSQFLWFENHMGEATRHQIHASLF 60
           MEI GC+ID S + IW + D   +EDV     +S   SQ  W ++ +    R  +  +  
Sbjct: 43  MEIVGCKIDQSHYCIWKEEDSCFIEDVEACRSISTSISQLRWTKSVISNLLRTLVDNN-- 102

Query: 61  FQLRDDI--GQWRI-KFRANGMWFLEWVLWPSTGGRKSV 96
           F+   DI  G+ RI KF+A   W L    WP +GG  ++
Sbjct: 103 FKKFGDIDGGRLRISKFQAKSGWVLSCDHWPYSGGLFNI 139

[Close]

BLAST of MC11g1349 vs. ExPASy TrEMBL
Match: A0A5D3BIA6 (Nucleotide binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00070 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.92e-04
Identity = 26/77 (33.77%), Postives = 39/77 (50.65%), Query Frame = 0


Query: 2   EISGCRIDGSFFYIWFDNDMFMLEDVSRKTLMSLHSSQFLWFENHMGEATRHQIHASLFF 61
           ++  C++    + IWFD D F +EDV  + ++SL  +QF WF   + E  R   +  L  
Sbjct: 261 KVERCKVVNVPYCIWFDKDYFHIEDVEARKILSLSDTQFRWFLKEISEFLRGPENGFLLR 320

Query: 62  QLRDDIGQWRI-KFRAN 77
              DD G  R+ KFR  
Sbjct: 321 NGFDDFGSTRLLKFRLE 337

The following BLAST results are available for this feature:

BLAST of MC11g1349 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g1349 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98834.1	9.06e-05	34.34	putative 3,4-dihydroxy-2-butanone kinase isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0036035.1	9.38e-05	34.34	putative 3,4-dihydroxy-2-butanone kinase isoform X2 [Cucumis melo var. makuwa]	[more]
TYJ98411.1	6.03e-04	33.77	nucleotide binding protein [Cucumis melo var. makuwa]	[more]

BLAST of MC11g1349 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIE8	4.39e-05	34.34	Putative 3,4-dihydroxy-2-butanone kinase isoform X1 OS=Cucumis melo var. makuwa ...	[more]
A0A5A7T3H6	4.54e-05	34.34	Putative 3,4-dihydroxy-2-butanone kinase isoform X2 OS=Cucumis melo var. makuwa ...	[more]
A0A5D3BIA6	2.92e-04	33.77	Nucleotide binding protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of MC11g1349 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1349.1	MC11g1349.1	mRNA